Prupe.8G100400_v2.0.a1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013388
Physical Location & Seq
Forward (+)
13170869 .. 13172806
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G100400.1

Sequence Viewer

Length: 966 bp
ATGGCTTGGTATTATTGGCAGCATAGCAAAACAGTCTATTCCCCCCGCAACCAACCGTTTCTCCAAGCGAAGAGGGAAAAATCGAAACTGCTGATTCACAGTCGCATCAAGCAAAGAAATATGCTGAGAAGAAGAGTCACATCCCTTCTCTCCACCACCATTCGCAGCTCCTCAATTCGCACTAAACCTACTCTCTCAGCCTCACCAATCTCATTCCAATCCCTCCATTTCCTCCAATGCCCAAACCCTAACCCTAGCATTAGCAATGCCAAAGGATTTGGCTTTCAGCCTGAGGGAATGAGAGCGTACAGTCTGCTGAGCTTGAACGATCTGAGAGGCAAGGTGCCCAGGAAGCAGAAGACGAGGAAAGGCCGTGGGATTGGGTCTGGTAAAGGTAAGACTGCTGGTCGAGGCCACAAGGGTCAGAAGGCTAGAGGCTCCGGGAAGTTGGGGTTTGAAGGTGGGCAGACGCCACTGCGACGTCGTTTGCCCAAGCGTGGGTTTAAGAACCCCTTTAGCCTCACTTTTCAGCCAGTAGGATTAGGAAAAATTGCCAAACTTATAAACGCAGGAAAGATTGATTCGTCTGAGTTGATTACAATGAAAACACTCAAGGATACAGGGGCAATAGGGAAGCAGATTAAAGATGGAGTCCGATTGATGGGACGTGGTGCTGAACAGATCCAGTGGCCAATTCATTTTGAGGTATCGCGTGTCACTGTGAGGGCAAAGGAAGCCGTTGAAGCTGCAGGTGGGTCTGTCAGAAGAGTGTATTACAACAAGTTGGGCTTTCGAGCATTGCTGAAACCTGAGTGGTTTGAAAAGAAAGGCAGGTTATTGCCAAAGGCAGCGAGACCTCCCCCAAAACAGAAGGACAAAGTCGATAGCATCGGCCGCTTGCCTGCCCCAACCAAACCTATTCCTTTTTTTACTGAAGAGGAGGTGGCCTCCAGTTCATCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

322

Amino Acids

35.79

Weight (kDa)

11.3

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64670
fragaria_vesca FvH4_3g30590
malus_domestica MD17G1181300.v1.1
prunus_persica Prupe.6G163200_v2.0.a1 Prupe.8G100400_v2.0.a1
pyrus_communis pycom17g19070
rosa_chinensis RchiOBHm_Chr5g0056641
rosa_laevigata RLG00000035114
rosa_multiflora Rmu_sc0004101.1_g000037 Rmu_sc0008982.1_g000001
rosa_roxburghii Rroxscaffold_1G00023720
rosa_rugosa Rorug05G0301100
rosa_samantha Rh5AG371400 Rh5BG383100 Rh5CG406300 Rh5DG395900
rosa_wichuraiana Rw0G018930 Rw5G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AarI CACCTGC 1 cut(s) 740
AatII GACGTC 1 cut(s) 484
Acc36I ACCTGC 2 cut(s) 740, 822
AccB1I GGYRCC 1 cut(s) 343
AccII CGCG 1 cut(s) 712
AciI CCGC 2 cut(s) 46, 895
AclWI GGATC 1 cut(s) 676
AcoI YGGCCR 2 cut(s) 689, 892
AcuI CTGAAG 1 cut(s) 954
AcyI GRCGYC 2 cut(s) 470, 481
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 497, 498, 661
AgsI TTSAA 4 cut(s) 325, 458, 743, 821
AhdI GACNNNNNGTC 1 cut(s) 405
AjiI CACGTC 1 cut(s) 668
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 3 cut(s) 168, 321, 746
AluI AGCT 3 cut(s) 168, 321, 746
Alw26I GTCTC 1 cut(s) 847
AlwI GGATC 1 cut(s) 676
AoxI GGCC 5 cut(s) 370, 412, 689, 892, 945
ApeKI GCWGC 4 cut(s) 19, 165, 746, 848
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 195
AxyI CCTNAGG 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 691
BanI GGYRCC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 365
BbvI GCAGC 4 cut(s) 31, 177, 733, 860
BccI CCATC 2 cut(s) 641, 655
BceAI ACGGC 2 cut(s) 357, 722
BciT130I CCWGG 1 cut(s) 349
BciVI GTATCC 1 cut(s) 610
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 847
BfaI CTAG 2 cut(s) 255, 432
BfmI CTRYAG 1 cut(s) 747
BfuAI ACCTGC 2 cut(s) 740, 822
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 5 cut(s) 20, 166, 747, 849, 895
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 5 cut(s) 21, 167, 748, 850, 896
Bme1390I CCNGG 2 cut(s) 349, 442
BmeRI GACNNNNNGTC 1 cut(s) 405
BmgBI CACGTC 1 cut(s) 668
BmiI GGNNCC 2 cut(s) 345, 439
BmrFI CCNGG 2 cut(s) 349, 442
BmsI GCATC 2 cut(s) 114, 897
BpiI GAAGAC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 932, 964
BpmI CTGGAG 1 cut(s) 934
Bpu1102I GCTNAGC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 442
BsaHI GRCGYC 2 cut(s) 470, 481
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 2 cut(s) 347, 373
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 3 cut(s) 497, 498, 661
Bse1I ACTGG 3 cut(s) 533, 685, 951
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 2 cut(s) 271, 797
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 2 cut(s) 347, 373
BseGI GGATG 2 cut(s) 140, 956
BseLI CCNNNNNNNGG 3 cut(s) 497, 498, 661
BseMI GCAATG 2 cut(s) 271, 797
BseMII CTCAG 7 cut(s) 116, 210, 282, 308, 323, 579, 801
BseNI ACTGG 3 cut(s) 533, 685, 951
BseRI GAGGAG 2 cut(s) 160, 953
BseSI GKGCMC 1 cut(s) 348
BseX3I CGGCCG 1 cut(s) 892
BseXI GCAGC 4 cut(s) 31, 177, 733, 860
Bsh1236I CGCG 1 cut(s) 712
Bsh1285I CGRYCG 1 cut(s) 895
BshFI GGCC 5 cut(s) 372, 414, 691, 894, 947
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 895
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 3 cut(s) 497, 498, 661
BsmAI GTCTC 1 cut(s) 847
BsmFI GGGAC 1 cut(s) 678
BsnI GGCC 5 cut(s) 372, 414, 691, 894, 947
Bso31I GGTCTC 1 cut(s) 847
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 328, 681
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 2 cut(s) 46, 895
BspANI GGCC 5 cut(s) 372, 414, 691, 894, 947
BspCNI CTCAG 7 cut(s) 117, 209, 283, 309, 324, 580, 802
BspFNI CGCG 1 cut(s) 712
BspLI GGNNCC 2 cut(s) 345, 439
BspMAI CTGCAG 1 cut(s) 751
BspMI ACCTGC 2 cut(s) 740, 822
BspPI GGATC 1 cut(s) 676
BspT107I GGYRCC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 847
BsrDI GCAATG 2 cut(s) 271, 797
BsrI ACTGG 3 cut(s) 533, 685, 951
BssECI CCNNGG 2 cut(s) 347, 373
BssMI GATC 2 cut(s) 328, 681
BssNI GRCGYC 2 cut(s) 470, 481
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 5 cut(s) 34, 57, 101, 311, 721
Bst6I CTCTTC 4 cut(s) 65, 127, 760, 930
BstACI GRCGYC 2 cut(s) 470, 481
BstC8I GCNNGC 2 cut(s) 899, 903
BstDEI CTNAG 7 cut(s) 125, 196, 291, 317, 332, 588, 810
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 2 cut(s) 140, 956
BstFNI CGCG 1 cut(s) 712
BstKTI GATC 2 cut(s) 331, 684
BstMAI GTCTC 1 cut(s) 847
BstMBI GATC 2 cut(s) 328, 681
BstMCI CGRYCG 1 cut(s) 895
BstMWI GCNNNNNNNGC 4 cut(s) 352, 734, 743, 894
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 347, 440
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 1 cut(s) 348
BstUI CGCG 1 cut(s) 712
BstV1I GCAGC 4 cut(s) 31, 177, 733, 860
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 681
BstYI RGATCY 1 cut(s) 681
BstZI CGGCCG 1 cut(s) 892
Bsu36I CCTNAGG 1 cut(s) 291
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 5 cut(s) 372, 414, 691, 894, 947
BtgI CCRYGG 1 cut(s) 373
BtrI CACGTC 1 cut(s) 668
BtsCI GGATG 2 cut(s) 140, 956
BtsI GCAGTG 1 cut(s) 473
BtsIMutI CAGTG 3 cut(s) 473, 692, 717
BveI ACCTGC 2 cut(s) 740, 822
Cac8I GCNNGC 2 cut(s) 899, 903
CseI GACGC 1 cut(s) 478
Csp6I GTAC 1 cut(s) 307
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 7 cut(s) 125, 196, 291, 317, 332, 588, 810
DpnI GATC 2 cut(s) 330, 683
DpnII GATC 2 cut(s) 328, 681
DriI GACNNNNNGTC 1 cut(s) 405
EaeI YGGCCR 2 cut(s) 689, 892
EagI CGGCCG 1 cut(s) 892
Eam1104I CTCTTC 4 cut(s) 65, 127, 760, 930
Eam1105I GACNNNNNGTC 1 cut(s) 405
EarI CTCTTC 4 cut(s) 65, 127, 760, 930
EclXI CGGCCG 1 cut(s) 892
Eco31I GGTCTC 1 cut(s) 847
Eco52I CGGCCG 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 954
Eco81I CCTNAGG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 347
FaiI YATR 3 cut(s) 24, 122, 563
FalI AAGNNNNNCTT 4 cut(s) 497, 529, 773, 805
FaqI GGGAC 1 cut(s) 678
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 5 cut(s) 20, 166, 747, 849, 895
FokI GGATG 2 cut(s) 127, 943
Fsp4HI GCNGC 5 cut(s) 20, 166, 747, 849, 895
FspBI CTAG 2 cut(s) 255, 432
GluI GCNGC 5 cut(s) 20, 166, 747, 849, 895
GsuI CTGGAG 1 cut(s) 934
HaeIII GGCC 5 cut(s) 372, 414, 691, 894, 947
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 478
Hin1I GRCGYC 2 cut(s) 470, 481
HinfI GANTC 4 cut(s) 94, 135, 581, 651
HpaII CCGG 1 cut(s) 441
HphI GGTGA 1 cut(s) 195
Hpy188I TCNGA 5 cut(s) 333, 426, 589, 656, 764
Hpy99I CGWCG 2 cut(s) 483, 486
HpyAV CCTTC 4 cut(s) 155, 421, 452, 865
HpyCH4III ACNGT 5 cut(s) 34, 57, 101, 311, 721
HpyCH4IV ACGT 2 cut(s) 481, 667
HpyCH4V TGCA 1 cut(s) 749
HpyF10VI GCNNNNNNNGC 4 cut(s) 352, 734, 743, 894
HpyF3I CTNAG 7 cut(s) 125, 196, 291, 317, 332, 588, 810
HpySE526I ACGT 2 cut(s) 481, 667
Hsp92I GRCGYC 2 cut(s) 470, 481
Kzo9I GATC 2 cut(s) 328, 681
LmnI GCTCC 2 cut(s) 173, 443
Lsp1109I GCAGC 4 cut(s) 31, 177, 733, 860
LweI GCATC 2 cut(s) 114, 897
MaeI CTAG 2 cut(s) 255, 432
MaeII ACGT 2 cut(s) 481, 667
MaeIII GTNAC 2 cut(s) 136, 715
MalI GATC 2 cut(s) 330, 683
MboI GATC 2 cut(s) 328, 681
MboII GAAGA 6 cut(s) 82, 141, 144, 370, 777, 947
MflI RGATCY 1 cut(s) 681
MhlI GDGCHC 1 cut(s) 348
MlsI TGGCCA 1 cut(s) 691
MluCI AATT 3 cut(s) 174, 549, 693
MluNI TGGCCA 1 cut(s) 691
MlyI GAGTC 2 cut(s) 144, 660
Mox20I TGGCCA 1 cut(s) 691
MscI TGGCCA 1 cut(s) 691
MseI TTAA 3 cut(s) 504, 642, 964
Msp20I TGGCCA 1 cut(s) 691
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 349, 442
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 712
MwoI GCNNNNNNNGC 4 cut(s) 352, 734, 743, 894
NciI CCSGG 1 cut(s) 442
NdeII GATC 2 cut(s) 328, 681
NlaIV GGNNCC 2 cut(s) 345, 439
NmuCI GTSAC 2 cut(s) 136, 715
PaqCI CACCTGC 1 cut(s) 740
PfeI GAWTC 2 cut(s) 94, 581
PflFI GACNNNGTC 1 cut(s) 878
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 5 cut(s) 21, 167, 748, 850, 896
PleI GAGTC 2 cut(s) 143, 659
PpsI GAGTC 2 cut(s) 143, 659
PsiI TTATAA 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 345, 439
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 1 cut(s) 681
PsyI GACNNNGTC 1 cut(s) 878
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 3 cut(s) 504, 642, 964
SatI GCNGC 5 cut(s) 20, 166, 747, 849, 895
Sau3AI GATC 2 cut(s) 328, 681
SchI GAGTC 2 cut(s) 144, 660
ScrFI CCNGG 2 cut(s) 349, 442
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 2 cut(s) 114, 897
SfcI CTRYAG 1 cut(s) 747
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 3 cut(s) 174, 549, 693
SsiI CCGC 2 cut(s) 46, 895
SspMI CTAG 2 cut(s) 255, 432
StyD4I CCNGG 2 cut(s) 347, 440
TaaI ACNGT 5 cut(s) 34, 57, 101, 311, 721
TaiI ACGT 2 cut(s) 484, 670
TaqI TCGA 4 cut(s) 83, 409, 793, 882
TasI AATT 3 cut(s) 174, 549, 693
TauI GCSGC 1 cut(s) 897
TfiI GAWTC 2 cut(s) 94, 581
Tru1I TTAA 3 cut(s) 504, 642, 964
Tru9I TTAA 3 cut(s) 504, 642, 964
TscAI CASTG 3 cut(s) 480, 692, 724
TseFI GTSAC 2 cut(s) 136, 715
TseI GCWGC 4 cut(s) 19, 165, 746, 848
Tsp45I GTSAC 2 cut(s) 136, 715
TspDTI ATGAA 3 cut(s) 617, 686, 945
TspRI CASTG 3 cut(s) 480, 692, 724
Tth111I GACNNNGTC 1 cut(s) 878
XspI CTAG 2 cut(s) 255, 432
ZraI GACGTC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.