FvH4_3g30590

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013388
Physical Location & Seq
Forward (+)
23871247 .. 23876035
4789 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30590.t1

Sequence Viewer

Length: 858 bp
ATGTTGCTCAGAAGAAGACTCACCTCCCTCCTCTCCACCTCCATCGTCTCCCCCAGACCCACTCTTACTCTCACTCCCTCTCCCTCTTCCCAATCCTCCCTACGTTTCCTTCCTCACTCCTCCAACCCTAACCCTAGCTTCAGCGCCAATGGCAAAGCCTCAGCCTTGGGGTTTGTTCAGGGAGTGAGGGCGTACAGCAGTCTGCTGAGCCTGAACGATCTGAGACCCAGAGTGCCGAGGAAGCAGAAGACCAGGAAAGGCCGTGGGATTGGGTCCGGGAAAGGAAAGACGGCGGGGAGAGGACACAAGGGTCAGAAGGCCAGGGGCTCCGGGAAGCTGGGGTTTGAGGGAGGACAGACCCCGCTGCGACGTCGTTTGCCCAAGCGTGGGTTTAAGAACCCCTTTAGTCTCACTTTTCAGCCAGTAGGATTAGGGAAGATTGCCAAACTTATAAATGCAGGAAAGATTGATTCTTCAGAGTTGATTACAATGAAAACTCTCAAGGATACAGGGGCAATAGGGAAGCAGATAAAAGATGGAATGAGATTAATGGGACGTGGTGCTGAACACATCAAGTGGCCAATTAATCTGGAGGTATCACGTGTCACTGTTAGGGCAAAGGCTGCAGTTGAAGCTGCAGGAGGGTCTGTTAGAAGAGTGTATTACAACAAGTTAGGCTTTCGAGCTTTGCTCACACCTGAGTGGTTTGAAAAGAAGGGCAGATTATTGCCAAGAGCAGCTAGACCTCCGCCAAAACAGAAGGATAAGGTTGATAGCATTGGCCGCTTGCCAGCCCCAACCAAACCTATTCCATTTTTTACTGAAGAAAATGAGGCAGCCTCCAGTTCATCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

286

Amino Acids

30.93

Weight (kDa)

11.65

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27A PF00828 141 - 217 1.2e-16 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64670
fragaria_vesca FvH4_3g30590
malus_domestica MD17G1181300.v1.1
prunus_persica Prupe.6G163200_v2.0.a1 Prupe.8G100400_v2.0.a1
pyrus_communis pycom17g19070
rosa_chinensis RchiOBHm_Chr5g0056641
rosa_laevigata RLG00000035114
rosa_multiflora Rmu_sc0004101.1_g000037 Rmu_sc0008982.1_g000001
rosa_roxburghii Rroxscaffold_1G00023720
rosa_rugosa Rorug05G0301100
rosa_samantha Rh5AG371400 Rh5BG383100 Rh5CG406300 Rh5DG395900
rosa_wichuraiana Rw0G018930 Rw5G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
AasI GACNNNNNNGTC 1 cut(s) 309
AatII GACGTC 1 cut(s) 373
AciI CCGC 4 cut(s) 293, 362, 749, 784
AcoI YGGCCR 2 cut(s) 578, 781
AcuI CTGAAG 3 cut(s) 124, 459, 843
AcvI CACGTG 1 cut(s) 602
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 386, 387
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 2 cut(s) 632, 710
AjiI CACGTC 1 cut(s) 557
AjnI CCWGG 2 cut(s) 251, 320
AleI CACNNNNGTG 1 cut(s) 700
AluBI AGCT 5 cut(s) 138, 337, 635, 686, 740
AluI AGCT 5 cut(s) 138, 337, 635, 686, 740
Alw26I GTCTC 3 cut(s) 52, 217, 413
AoxI GGCC 4 cut(s) 259, 318, 578, 781
ApeKI GCWGC 5 cut(s) 364, 623, 635, 737, 836
AseI ATTAAT 2 cut(s) 548, 585
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 2 cut(s) 277, 331
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 580
BanII GRGCYC 1 cut(s) 329
BbrPI CACGTG 1 cut(s) 602
BbsI GAAGAC 2 cut(s) 22, 254
BbvCI CCTCAGC 1 cut(s) 160
BbvI GCAGC 5 cut(s) 351, 610, 622, 749, 848
BccI CCATC 2 cut(s) 50, 530
BceAI ACGGC 2 cut(s) 246, 306
BciT130I CCWGG 2 cut(s) 253, 322
BciVI GTATCC 1 cut(s) 499
BcnI CCSGG 2 cut(s) 277, 331
BcoDI GTCTC 3 cut(s) 52, 217, 413
BfaI CTAG 2 cut(s) 135, 741
BfmI CTRYAG 2 cut(s) 624, 636
BfoI RGCGCY 1 cut(s) 147
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 6 cut(s) 365, 624, 636, 738, 784, 837
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 6 cut(s) 366, 625, 637, 739, 785, 838
Bme1390I CCNGG 4 cut(s) 253, 277, 322, 331
Bme18I GGWCC 1 cut(s) 273
BmgBI CACGTC 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 274, 328
BmrFI CCNGG 4 cut(s) 253, 277, 322, 331
BpiI GAAGAC 2 cut(s) 22, 254
BplI GAGNNNNNCTC 4 cut(s) 675, 707, 824, 856
BpmI CTGGAG 2 cut(s) 611, 826
Bpu10I CCTNAGC 1 cut(s) 160
Bpu1102I GCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 277, 331
BsaAI YACGTR 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 4 cut(s) 165, 236, 262, 321
BsaXI ACNNNNNCTCC 6 cut(s) 58, 64, 88, 94, 633, 663
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 387
Bse1I ACTGG 2 cut(s) 422, 843
BseBI CCWGG 2 cut(s) 253, 322
BseDI CCNNGG 4 cut(s) 165, 236, 262, 321
BseLI CCNNNNNNNGG 2 cut(s) 386, 387
BseMII CTCAG 5 cut(s) 22, 174, 197, 212, 690
BseNI ACTGG 2 cut(s) 422, 843
BseRI GAGGAG 2 cut(s) 20, 109
BseXI GCAGC 5 cut(s) 351, 610, 622, 749, 848
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 4 cut(s) 261, 320, 580, 783
BsiSI CCGG 2 cut(s) 276, 330
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 2 cut(s) 386, 387
BsmAI GTCTC 3 cut(s) 52, 217, 413
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 567
BsnI GGCC 4 cut(s) 261, 320, 580, 783
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 217
Bsp1720I GCTNAGC 1 cut(s) 206
BspACI CCGC 4 cut(s) 293, 362, 749, 784
BspANI GGCC 4 cut(s) 261, 320, 580, 783
BspCNI CTCAG 5 cut(s) 21, 173, 198, 213, 691
BspLI GGNNCC 2 cut(s) 274, 328
BspMAI CTGCAG 2 cut(s) 628, 640
BspTNI GGTCTC 1 cut(s) 217
BsrI ACTGG 2 cut(s) 422, 843
BssECI CCNNGG 4 cut(s) 165, 236, 262, 321
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 253, 322
Bst4CI ACNGT 1 cut(s) 610
Bst6I CTCTTC 2 cut(s) 91, 649
BstACI GRCGYC 1 cut(s) 370
BstAPI GCANNNNNTGC 1 cut(s) 623
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 788, 792
BstDEI CTNAG 5 cut(s) 8, 160, 206, 221, 699
BstDSI CCRYGG 1 cut(s) 262
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 3 cut(s) 52, 217, 413
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 5 cut(s) 150, 241, 623, 632, 783
BstNI CCWGG 2 cut(s) 253, 322
BstSCI CCNGG 4 cut(s) 251, 275, 320, 329
BstSFI CTRYAG 2 cut(s) 624, 636
BstV1I GCAGC 5 cut(s) 351, 610, 622, 749, 848
BstV2I GAAGAC 2 cut(s) 22, 254
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 4 cut(s) 261, 320, 580, 783
BtgI CCRYGG 1 cut(s) 262
BtrI CACGTC 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 2 cut(s) 788, 792
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 193
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 5 cut(s) 8, 160, 206, 221, 699
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 309
EaeI YGGCCR 2 cut(s) 578, 781
Eam1104I CTCTTC 2 cut(s) 91, 649
EarI CTCTTC 2 cut(s) 91, 649
EciI GGCGGA 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 3 cut(s) 124, 459, 843
Eco72I CACGTG 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 251, 320
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 52
FaiI YATR 1 cut(s) 452
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 662, 694
FaqI GGGAC 1 cut(s) 567
FauI CCCGC 2 cut(s) 286, 369
Fnu4HI GCNGC 6 cut(s) 365, 624, 636, 738, 784, 837
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 6 cut(s) 365, 624, 636, 738, 784, 837
FspBI CTAG 2 cut(s) 135, 741
GlaI GCGC 1 cut(s) 145
GluI GCNGC 6 cut(s) 365, 624, 636, 738, 784, 837
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 2 cut(s) 611, 826
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 4 cut(s) 261, 320, 580, 783
HapII CCGG 2 cut(s) 276, 330
HhaI GCGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 370
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 2 cut(s) 18, 470
HpaII CCGG 2 cut(s) 276, 330
HphI GGTGA 1 cut(s) 13
Hpy188I TCNGA 4 cut(s) 11, 222, 315, 478
Hpy188III TCNNGA 1 cut(s) 590
Hpy99I CGWCG 2 cut(s) 372, 375
HpyAV CCTTC 4 cut(s) 119, 310, 709, 754
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 4 cut(s) 103, 370, 556, 601
HpyCH4V TGCA 3 cut(s) 458, 626, 638
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 241, 623, 632, 783
HpyF3I CTNAG 5 cut(s) 8, 160, 206, 221, 699
HpySE526I ACGT 4 cut(s) 103, 370, 556, 601
Hsp92I GRCGYC 1 cut(s) 370
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 332
Lsp1109I GCAGC 5 cut(s) 351, 610, 622, 749, 848
MaeI CTAG 2 cut(s) 135, 741
MaeII ACGT 4 cut(s) 103, 370, 556, 601
MaeIII GTNAC 1 cut(s) 604
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 8 cut(s) 24, 27, 78, 259, 448, 465, 666, 836
MhlI GDGCHC 1 cut(s) 329
MlsI TGGCCA 1 cut(s) 580
MluCI AATT 1 cut(s) 582
MluNI TGGCCA 1 cut(s) 580
MlyI GAGTC 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 580
MscI TGGCCA 1 cut(s) 580
MseI TTAA 3 cut(s) 393, 548, 585
MslI CAYNNNNRTG 1 cut(s) 700
Msp20I TGGCCA 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 2 cut(s) 276, 330
MspR9I CCNGG 4 cut(s) 253, 277, 322, 331
MvaI CCWGG 2 cut(s) 253, 322
MwoI GCNNNNNNNGC 5 cut(s) 150, 241, 623, 632, 783
NciI CCSGG 2 cut(s) 277, 331
NdeII GATC 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 274, 328
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 604
OliI CACNNNNGTG 1 cut(s) 700
PfeI GAWTC 1 cut(s) 470
PfoI TCCNGGA 2 cut(s) 275, 329
PkrI GCNGC 6 cut(s) 366, 625, 637, 739, 785, 838
PleI GAGTC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 602
PmlI CACGTG 1 cut(s) 602
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 602
PshBI ATTAAT 2 cut(s) 548, 585
PsiI TTATAA 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 251, 320
PspCI CACGTG 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 2 cut(s) 251, 320
PspN4I GGNNCC 2 cut(s) 274, 328
PspPI GGNCC 1 cut(s) 273
PstI CTGCAG 2 cut(s) 628, 640
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 700
SaqAI TTAA 3 cut(s) 393, 548, 585
SatI GCNGC 6 cut(s) 365, 624, 636, 738, 784, 837
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 4 cut(s) 253, 277, 322, 331
SduI GDGCHC 1 cut(s) 329
SfcI CTRYAG 2 cut(s) 624, 636
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 700
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 1 cut(s) 582
SsiI CCGC 4 cut(s) 293, 362, 749, 784
SspMI CTAG 2 cut(s) 135, 741
StyD4I CCNGG 4 cut(s) 251, 275, 320, 329
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 4 cut(s) 106, 373, 559, 604
TaqI TCGA 1 cut(s) 682
TasI AATT 1 cut(s) 582
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 3 cut(s) 393, 548, 585
Tru9I TTAA 3 cut(s) 393, 548, 585
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 5 cut(s) 364, 623, 635, 737, 836
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 2 cut(s) 506, 837
TspRI CASTG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 273
VspI ATTAAT 2 cut(s) 548, 585
XspI CTAG 2 cut(s) 135, 741
ZraI GACGTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.