Prupe.6G163200_v2.0.a1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013388
Physical Location & Seq
Reverse (-)
15486458 .. 15493393
6936 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G163200.1

Sequence Viewer

Length: 831 bp
ATGCTGAGAAGAAGACTCGCATCCCTTCTCTCCACCGCCATTCGCACTAAACCTACTCTCTCACCCTCACCAATCTCATTCCAATCCCTCCATTTACTCCAATGCCCAAACCCTAACCCTAGCATTGGCGATGTCAAAGGGTTCGGCTTTCAGCCTCAGGGATTGAGAGCGTACAGTCTGCTGAGCTTGAACGATCTGAGAGGCAAGGTTCCCAGGAAGCAGAAGACGAGGAAAGGCCGCGGGATTGGGTCTGGTAAAGGCAAGACTGCTGGTCGAGGACACAAGGGTCAGAAGGCTAGAGGCTCCGGGAAGTTGGGTTTTGAAGGTGGTCAGACGCCATTACGACGTCGTTTGCCCAAGCGTGGTTTTAAGAACCCTTTTAGTCTCACTTTTCAGCCAGTAGGATTAGGAAAAATTGCCAAACTTATAAATGCAGGAAAGATTGATTCGTCTGAGTTGATTACAATGAAAACACTCAAGGATACAGGGGCCATAGGGAAGCAGATTAAAGATGGAGTCCGATTGATGGGACGTGGTGCTGAACAGATCCAGTGGCCGATTCATCTGGAGGTATCACGCGTCACTGTAAGGGCAAAGGAAGCCGTTGAAGCTGCAGGTGGGTCTGTCAGAAGAGTGTATTACAACAAGTTGGGCTTTCGAGCTTTGCTCAAACCTGAGTGGTTTGAAAAGAAAGGCAGGTTATTGCCAAAGGCAGCGAGACCTCCCCCAAAACAGAAGGACAAAGTCGATAGCATCGGCCGCTTGCCGGCCCCAACCAAACCTGTTCCTTTTTTCACTGAAGAGGAGGTGGCCTCCAGTTCATCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

277

Amino Acids

30.13

Weight (kDa)

11.25

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64670
fragaria_vesca FvH4_3g30590
malus_domestica MD17G1181300.v1.1
prunus_persica Prupe.6G163200_v2.0.a1 Prupe.8G100400_v2.0.a1
pyrus_communis pycom17g19070
rosa_chinensis RchiOBHm_Chr5g0056641
rosa_laevigata RLG00000035114
rosa_multiflora Rmu_sc0004101.1_g000037 Rmu_sc0008982.1_g000001
rosa_roxburghii Rroxscaffold_1G00023720
rosa_rugosa Rorug05G0301100
rosa_samantha Rh5AG371400 Rh5BG383100 Rh5CG406300 Rh5DG395900
rosa_wichuraiana Rw0G018930 Rw5G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AarI CACCTGC 1 cut(s) 605
AasI GACNNNNNNGTC 1 cut(s) 285
AatII GACGTC 1 cut(s) 349
Acc36I ACCTGC 2 cut(s) 605, 687
AccII CGCG 2 cut(s) 240, 579
AciI CCGC 4 cut(s) 36, 238, 240, 760
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 2 cut(s) 554, 757
AcuI CTGAAG 1 cut(s) 819
AcyI GRCGYC 2 cut(s) 335, 346
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 4 cut(s) 125, 362, 526, 766
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 4 cut(s) 190, 323, 608, 686
AhdI GACNNNNNGTC 1 cut(s) 270
AjiI CACGTC 1 cut(s) 533
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 3 cut(s) 186, 611, 662
AluI AGCT 3 cut(s) 186, 611, 662
Alw26I GTCTC 2 cut(s) 389, 712
AlwI GGATC 1 cut(s) 541
AoxI GGCC 6 cut(s) 235, 489, 554, 757, 768, 810
ApeKI GCWGC 2 cut(s) 611, 713
AspS9I GGNCC 2 cut(s) 489, 769
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 54, 60
AxyI CCTNAGG 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 19, 230
BbvI GCAGC 2 cut(s) 598, 725
BccI CCATC 2 cut(s) 506, 520
BceAI ACGGC 1 cut(s) 587
BciT130I CCWGG 1 cut(s) 214
BciVI GTATCC 1 cut(s) 475
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 389, 712
BfaI CTAG 2 cut(s) 120, 297
BfmI CTRYAG 1 cut(s) 612
BfuAI ACCTGC 2 cut(s) 605, 687
BfuI GTATCC 1 cut(s) 475
BisI GCNGC 4 cut(s) 238, 612, 714, 760
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 4 cut(s) 239, 613, 715, 761
Bme1390I CCNGG 2 cut(s) 214, 307
BmeRI GACNNNNNGTC 1 cut(s) 270
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 489, 769
BmiI GGNNCC 4 cut(s) 210, 304, 490, 771
BmrFI CCNGG 2 cut(s) 214, 307
BmsI GCATC 2 cut(s) 29, 762
BpiI GAAGAC 2 cut(s) 19, 230
BplI GAGNNNNNCTC 4 cut(s) 651, 683, 797, 829
BpmI CTGGAG 2 cut(s) 587, 799
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 307
BsaHI GRCGYC 2 cut(s) 335, 346
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 2 cut(s) 212, 238
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 362, 526, 766
Bse118I RCCGGY 1 cut(s) 766
Bse1I ACTGG 3 cut(s) 398, 550, 816
Bse21I CCTNAGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 212, 238
BseGI GGATG 2 cut(s) 20, 821
BseLI CCNNNNNNNGG 4 cut(s) 125, 362, 526, 766
BseMII CTCAG 5 cut(s) 170, 173, 188, 444, 666
BseNI ACTGG 3 cut(s) 398, 550, 816
BseRI GAGGAG 1 cut(s) 818
BseX3I CGGCCG 1 cut(s) 757
BseXI GCAGC 2 cut(s) 598, 725
Bsh1236I CGCG 2 cut(s) 240, 579
Bsh1285I CGRYCG 1 cut(s) 760
BshFI GGCC 6 cut(s) 237, 491, 556, 759, 770, 812
BsiEI CGRYCG 1 cut(s) 760
BsiSI CCGG 2 cut(s) 306, 767
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 4 cut(s) 125, 362, 526, 766
BsmAI GTCTC 2 cut(s) 389, 712
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 6 cut(s) 237, 491, 556, 759, 770, 812
Bso31I GGTCTC 1 cut(s) 712
Bsp143I GATC 2 cut(s) 193, 546
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 4 cut(s) 36, 238, 240, 760
BspANI GGCC 6 cut(s) 237, 491, 556, 759, 770, 812
BspCNI CTCAG 5 cut(s) 169, 174, 189, 445, 667
BspFNI CGCG 2 cut(s) 240, 579
BspLI GGNNCC 4 cut(s) 210, 304, 490, 771
BspMAI CTGCAG 1 cut(s) 616
BspMI ACCTGC 2 cut(s) 605, 687
BspPI GGATC 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 712
BsrFI RCCGGY 1 cut(s) 766
BsrI ACTGG 3 cut(s) 398, 550, 816
BssAI RCCGGY 1 cut(s) 766
BssECI CCNNGG 2 cut(s) 212, 238
BssMI GATC 2 cut(s) 193, 546
BssNI GRCGYC 2 cut(s) 335, 346
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 176, 586
Bst6I CTCTTC 2 cut(s) 625, 795
BstACI GRCGYC 2 cut(s) 335, 346
BstC8I GCNNGC 2 cut(s) 764, 768
BstDEI CTNAG 6 cut(s) 5, 156, 182, 197, 453, 675
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 20, 821
BstFNI CGCG 2 cut(s) 240, 579
BstKTI GATC 2 cut(s) 196, 549
BstMAI GTCTC 2 cut(s) 389, 712
BstMBI GATC 2 cut(s) 193, 546
BstMCI CGRYCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 3 cut(s) 599, 608, 759
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 212, 305
BstSFI CTRYAG 1 cut(s) 612
BstUI CGCG 2 cut(s) 240, 579
BstV1I GCAGC 2 cut(s) 598, 725
BstV2I GAAGAC 2 cut(s) 19, 230
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BstZI CGGCCG 1 cut(s) 757
Bsu36I CCTNAGG 1 cut(s) 156
BsuI GTATCC 1 cut(s) 475
BsuRI GGCC 6 cut(s) 237, 491, 556, 759, 770, 812
BtgI CCRYGG 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 2 cut(s) 20, 821
BtsIMutI CAGTG 3 cut(s) 557, 582, 795
BveI ACCTGC 2 cut(s) 605, 687
Cac8I GCNNGC 2 cut(s) 764, 768
Cfr10I RCCGGY 1 cut(s) 766
Cfr13I GGNCC 2 cut(s) 489, 769
Cfr42I CCGCGG 1 cut(s) 241
CseI GACGC 2 cut(s) 343, 568
Csp6I GTAC 1 cut(s) 172
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 6 cut(s) 5, 156, 182, 197, 453, 675
DpnI GATC 2 cut(s) 195, 548
DpnII GATC 2 cut(s) 193, 546
DrdI GACNNNNNNGTC 1 cut(s) 285
DriI GACNNNNNGTC 1 cut(s) 270
DseDI GACNNNNNNGTC 1 cut(s) 285
EaeI YGGCCR 2 cut(s) 554, 757
EagI CGGCCG 1 cut(s) 757
Eam1104I CTCTTC 2 cut(s) 625, 795
Eam1105I GACNNNNNGTC 1 cut(s) 270
EarI CTCTTC 2 cut(s) 625, 795
EclXI CGGCCG 1 cut(s) 757
Eco31I GGTCTC 1 cut(s) 712
Eco52I CGGCCG 1 cut(s) 757
Eco57I CTGAAG 1 cut(s) 819
Eco81I CCTNAGG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 212
FaiI YATR 2 cut(s) 428, 494
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 1 cut(s) 543
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 4 cut(s) 238, 612, 714, 760
FokI GGATG 2 cut(s) 7, 808
Fsp4HI GCNGC 4 cut(s) 238, 612, 714, 760
FspBI CTAG 2 cut(s) 120, 297
GluI GCNGC 4 cut(s) 238, 612, 714, 760
GsuI CTGGAG 2 cut(s) 587, 799
HaeIII GGCC 6 cut(s) 237, 491, 556, 759, 770, 812
HapII CCGG 2 cut(s) 306, 767
HgaI GACGC 2 cut(s) 343, 568
Hin1I GRCGYC 2 cut(s) 335, 346
HinfI GANTC 4 cut(s) 15, 446, 516, 559
HpaII CCGG 2 cut(s) 306, 767
HphI GGTGA 2 cut(s) 54, 60
Hpy188I TCNGA 6 cut(s) 198, 291, 333, 454, 521, 629
Hpy188III TCNNGA 1 cut(s) 566
Hpy99I CGWCG 2 cut(s) 348, 351
HpyAV CCTTC 4 cut(s) 35, 286, 317, 730
HpyCH4III ACNGT 2 cut(s) 176, 586
HpyCH4IV ACGT 2 cut(s) 346, 532
HpyCH4V TGCA 2 cut(s) 434, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 599, 608, 759
HpyF3I CTNAG 6 cut(s) 5, 156, 182, 197, 453, 675
HpySE526I ACGT 2 cut(s) 346, 532
Hsp92I GRCGYC 2 cut(s) 335, 346
KroI GCCGGC 1 cut(s) 766
KroNI GCCGGC 1 cut(s) 768
KspI CCGCGG 1 cut(s) 241
Kzo9I GATC 2 cut(s) 193, 546
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 2 cut(s) 598, 725
LweI GCATC 2 cut(s) 29, 762
MaeI CTAG 2 cut(s) 120, 297
MaeII ACGT 2 cut(s) 346, 532
MaeIII GTNAC 1 cut(s) 580
MalI GATC 2 cut(s) 195, 548
MboI GATC 2 cut(s) 193, 546
MboII GAAGA 5 cut(s) 21, 24, 235, 642, 812
MflI RGATCY 1 cut(s) 546
MluCI AATT 1 cut(s) 414
MluI ACGCGT 1 cut(s) 577
MlyI GAGTC 2 cut(s) 9, 525
MroNI GCCGGC 1 cut(s) 766
MseI TTAA 2 cut(s) 369, 507
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 2 cut(s) 306, 767
MspR9I CCNGG 2 cut(s) 214, 307
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 2 cut(s) 240, 579
MwoI GCNNNNNNNGC 3 cut(s) 599, 608, 759
NaeI GCCGGC 1 cut(s) 768
NciI CCSGG 1 cut(s) 307
NdeII GATC 2 cut(s) 193, 546
NgoMIV GCCGGC 1 cut(s) 766
NlaIV GGNNCC 4 cut(s) 210, 304, 490, 771
NmuCI GTSAC 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 605
PdiI GCCGGC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 446, 559
PflFI GACNNNGTC 1 cut(s) 743
PfoI TCCNGGA 1 cut(s) 305
PkrI GCNGC 4 cut(s) 239, 613, 715, 761
PleI GAGTC 2 cut(s) 9, 524
PpsI GAGTC 2 cut(s) 9, 524
PsiI TTATAA 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 4 cut(s) 210, 304, 490, 771
PspPI GGNCC 2 cut(s) 489, 769
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 1 cut(s) 546
PsyI GACNNNGTC 1 cut(s) 743
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacII CCGCGG 1 cut(s) 241
SaqAI TTAA 2 cut(s) 369, 507
SatI GCNGC 4 cut(s) 238, 612, 714, 760
Sau3AI GATC 2 cut(s) 193, 546
Sau96I GGNCC 2 cut(s) 489, 769
SchI GAGTC 2 cut(s) 9, 525
ScrFI CCNGG 2 cut(s) 214, 307
SfaNI GCATC 2 cut(s) 29, 762
SfcI CTRYAG 1 cut(s) 612
Sfr303I CCGCGG 1 cut(s) 241
SgrBI CCGCGG 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 1 cut(s) 414
SsiI CCGC 4 cut(s) 36, 238, 240, 760
SspMI CTAG 2 cut(s) 120, 297
StyD4I CCNGG 2 cut(s) 212, 305
TaaI ACNGT 2 cut(s) 176, 586
TaiI ACGT 2 cut(s) 349, 535
TaqI TCGA 3 cut(s) 274, 658, 747
TasI AATT 1 cut(s) 414
TauI GCSGC 2 cut(s) 240, 762
TfiI GAWTC 2 cut(s) 446, 559
Tru1I TTAA 2 cut(s) 369, 507
Tru9I TTAA 2 cut(s) 369, 507
TscAI CASTG 3 cut(s) 557, 589, 802
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 611, 713
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 3 cut(s) 482, 551, 810
TspRI CASTG 3 cut(s) 557, 589, 802
Tth111I GACNNNGTC 1 cut(s) 743
XspI CTAG 2 cut(s) 120, 297
ZraI GACGTC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.