Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012202

Physical Location & Seq

Genomic Coordinates Forward (+)

26003882 .. 26006851

Gene Structure 2970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGAACAATAGAGGAAATAATGATGACCTAGACCACCACTATGGAGTTTTCAATGATTTTGAGCGACGAATGACGTCTCGAAAGAAATCGGTTCTTGACAACACTTCTCCAATGATTTGGAAGACTGTTTCTGAGAGAAAGTCAAGTCCTGGAATTGAAGGCTTGAATCTATCGAGTTTTGATAGGCCTATGGCACCAACTACAGAGATTCGTGAACTCAGGGTGTTTCTAGCTACGTGGAACGTAGGAGGAAGAACACCAAACAATGATCTTAACCTCGAAGACTTCTTACTCGTTGAAGGCACAGCAGATTTATATATCTGTGGCTTTCAAGAGATTGTTCCTCTAAGTGCAGGAAACGTATTAGTAGTTGAGGATAACGAGCCAGCAGCTAAGTGGTTAGCTCTAATAAGTCAAGCTTTAAACAAACCGAAACAGGAATCTGTTTATTCGAATGCAGCTTACTCTGCTTCAAGAACAACTACTTGTAGTAGTAGTAGTTGTGGTAGTGAAGAATCAAGAGCACCAAGTAGTCTAAGTTTCTTTCAAAGACCGAATCTTAAGGTCTTGAGCAGAAATTATAGAGTCGATTCAAGTCTTTTAAAGACTTGTAATTGTCCGGTTATCGATACTTCGGTTGGTTGGGAAGCGAGGAGATCGAAAAGGTTTAGTGATCCTAGTACAGATAGTAGTAACAATGTGGAGCCTGAGAACTTTAGGGTTCATGAGAATTTCTTGTTTGATGATGTTCCTGCGACTACCAAGATGCCAGGACAAATGAGTTATCGATTGATTGCGAGTAAACAAATGGTTGGTTTGTTTTTGTCTGTTTGGGCTAGAAGAGAGTTGATTCCACATATATCTCATCTTAGACTTGATTCTGTTGGGAGAGGAATCATGGGTCGCTTAGGGAACAAGGGATGCATTGCTATAAGCATGTCATTGCACCAAACGAGCTTTTGCTTTGTGTGTAGCCATTTGGCTTCTGGTGAGAAAGAAGGTGATGAGCTGAGAAGAAACGCAGACGTAGCTGAGATTCTGAAACATACTCAATTCCCTAAACTCACCAAGAACCCTAATTGTCACGCACCCGAAAGAATCATTGATCATGACCGAGTGCTTTGGCTAGGAGATTTGAATTACAGAGTTGCATTAACCTATGAAGAGACGAGAGTATTACTAGAAGACAATGATTGGGACACTCTTCTTGAGAGAGACCAGCTAAACATGGAAAGAGGAGCAGGAAGAGTCTTTTCAGGATTTCAAGAAGGTCAAATCTTCTTTGCTCCAACCTATAAGTACTCTCAGAACTCAGATGCTTACGCCGGAGAAATGACCAAGTCCAAGAAAAAACGCCGTACTCCGGCTTGGTGTGATAGGATTCTATGGAAAGGAGAAGGAATAGAACAGCTTTCATATATTCGCGGCGAATCGCGGTTTTCAGATCATAGACCAGTTTGCGCGATCTTTGCAGTAGAAGTTGATGTGAAGAGTCTAAACAAAGGTAGATTCAGGAAAGGTTATTCTTGTGCGGCTGTAAGATTGGTTGAAGATGTGGCTATTCCACAAAGGCATAGTTTTTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0040007 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048364 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0052866 GO:0060560 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:0106019 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

529

Amino Acids

59.93

Weight (kDa)

7.92

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	79 - 151	1e-05	Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2	PF22669	247 - 488	1.4e-67	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65090 AT5G65090 AT5G65090
fragaria_vesca	FvH4_1g21290 FvH4_1g21290 FvH4_1g21290
malus_domestica	MD15G1327400.v1.1
prunus_persica	Prupe.6G181500_v2.0.a1
pyrus_communis	pycom15g29890
rosa_chinensis	RchiOBHm_Chr2g0115121
rosa_laevigata	RLG00000018160
rosa_multiflora	Rmu_sc0002784.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130600
rosa_rugosa	Rorug02G0193800
rosa_samantha	Rh2AG252200 Rh2BG261800 Rh2CG256800 Rh2DG260400
rosa_wichuraiana	Rw2G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	193
AccII	CGCG	3 cut(s)	1425, 1435, 1463
AciI	CCGC	3 cut(s)	1425, 1435, 1532
AclWI	GGATC	1 cut(s)	668
AcsI	RAATTY	1 cut(s)	730
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	3 cut(s)	682, 1301, 1360
AfiI	CCNNNNNNNGG	1 cut(s)	1363
AflII	CTTAAG	1 cut(s)	560
AjnI	CCWGG	2 cut(s)	148, 769
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	3 cut(s)	81, 1160, 1209
AlwI	GGATC	1 cut(s)	668
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	389, 458
ApoI	RAATTY	1 cut(s)	730
AspLEI	GCGC	1 cut(s)	1463
AsuHPI	GGTGA	3 cut(s)	1001, 1013, 1057
AsuII	TTCGAA	1 cut(s)	452
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BanI	GGYRCC	1 cut(s)	193
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BbsI	GAAGAC	3 cut(s)	128, 288, 1191
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	401, 470
BceAI	ACGGC	1 cut(s)	1341
BciT130I	CCWGG	2 cut(s)	150, 771
BclI	TGATCA	1 cut(s)	1105
BcoDI	GTCTC	3 cut(s)	81, 1160, 1209
BfaI	CTAG	6 cut(s)	29, 230, 678, 837, 1127, 1181
BfmI	CTRYAG	1 cut(s)	201
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	4 cut(s)	390, 459, 1426, 1533
BlsI	GCNGC	4 cut(s)	391, 460, 1427, 1534
BmcAI	AGTACT	1 cut(s)	1301
Bme1390I	CCNGG	2 cut(s)	150, 771
BmiI	GGNNCC	2 cut(s)	195, 705
BmrFI	CCNGG	2 cut(s)	150, 771
BmsI	GCATC	3 cut(s)	756, 911, 1306
BpiI	GAAGAC	3 cut(s)	128, 288, 1191
Bpu10I	CCTNAGC	1 cut(s)	907
Bpu14I	TTCGAA	1 cut(s)	452
BpuEI	CTTGAG	2 cut(s)	589, 1229
Bsa29I	ATCGAT	2 cut(s)	627, 787
BsaAI	YACGTR	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	1209
BsaWI	WCCGGW	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	1 cut(s)	1363
Bse1I	ACTGG	1 cut(s)	1454
Bse3DI	GCAATG	2 cut(s)	924, 941
BseBI	CCWGG	2 cut(s)	150, 771
BseCI	ATCGAT	2 cut(s)	627, 787
BseGI	GGATG	1 cut(s)	926
BseLI	CCNNNNNNNGG	1 cut(s)	1363
BseMI	GCAATG	2 cut(s)	924, 941
BseMII	CTCAG	7 cut(s)	123, 232, 699, 1001, 1023, 1319, 1326
BseNI	ACTGG	1 cut(s)	1454
BseRI	GAGGAG	2 cut(s)	667, 1251
BseXI	GCAGC	2 cut(s)	401, 470
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	3 cut(s)	1425, 1435, 1463
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	193
BshVI	ATCGAT	2 cut(s)	627, 787
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	3 cut(s)	620, 1326, 1364
BslFI	GGGAC	1 cut(s)	1211
BslI	CCNNNNNNNGG	1 cut(s)	1363
BsmAI	GTCTC	3 cut(s)	81, 1160, 1209
BsmBI	CGTCTC	2 cut(s)	81, 1160
BsmFI	GGGAC	1 cut(s)	1211
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	1 cut(s)	1209
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	6 cut(s)	268, 656, 673, 1105, 1444, 1464
BspACI	CCGC	3 cut(s)	1425, 1435, 1532
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	7 cut(s)	124, 231, 700, 1002, 1024, 1318, 1325
BspDI	ATCGAT	2 cut(s)	627, 787
BspFNI	CGCG	3 cut(s)	1425, 1435, 1463
BspHI	TCATGA	2 cut(s)	724, 1108
BspLI	GGNNCC	2 cut(s)	195, 705
BspPI	GGATC	1 cut(s)	668
BspT104I	TTCGAA	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	1209
BsrDI	GCAATG	2 cut(s)	924, 941
BsrI	ACTGG	1 cut(s)	1454
BssMI	GATC	6 cut(s)	268, 656, 673, 1105, 1444, 1464
BssNI	GRCGYC	1 cut(s)	74
Bst2UI	CCWGG	2 cut(s)	150, 771
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	5 cut(s)	835, 1158, 1209, 1240, 1484
BstACI	GRCGYC	1 cut(s)	74
BstAFI	CTTAAG	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	926
BstFNI	CGCG	3 cut(s)	1425, 1435, 1463
BstHHI	GCGC	1 cut(s)	1463
BstKTI	GATC	6 cut(s)	271, 659, 676, 1108, 1447, 1467
BstMAI	GTCTC	3 cut(s)	81, 1160, 1209
BstMBI	GATC	6 cut(s)	268, 656, 673, 1105, 1444, 1464
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 1028, 1469
BstNI	CCWGG	2 cut(s)	150, 771
BstNSI	RCATGY	1 cut(s)	940
BstSCI	CCNGG	2 cut(s)	148, 769
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	3 cut(s)	1425, 1435, 1463
BstV1I	GCAGC	2 cut(s)	401, 470
BstV2I	GAAGAC	3 cut(s)	128, 288, 1191
BstXI	CCANNNNNNTGG	2 cut(s)	41, 117
Bsu15I	ATCGAT	2 cut(s)	627, 787
BsuRI	GGCC	1 cut(s)	187
BsuTUI	ATCGAT	2 cut(s)	627, 787
BtsCI	GGATG	1 cut(s)	926
Cac8I	GCNNGC	1 cut(s)	387
CciI	TCATGA	2 cut(s)	724, 1108
CfoI	GCGC	1 cut(s)	1463
ClaI	ATCGAT	2 cut(s)	627, 787
Csp6I	GTAC	3 cut(s)	681, 1300, 1359
CviAII	CATG	5 cut(s)	725, 898, 937, 1109, 1228
CviQI	GTAC	3 cut(s)	681, 1300, 1359
DpnI	GATC	6 cut(s)	270, 658, 675, 1107, 1446, 1466
DpnII	GATC	6 cut(s)	268, 656, 673, 1105, 1444, 1464
DraI	TTTAAA	2 cut(s)	423, 603
Eam1104I	CTCTTC	5 cut(s)	835, 1158, 1209, 1240, 1484
EarI	CTCTTC	5 cut(s)	835, 1158, 1209, 1240, 1484
Eco147I	AGGCCT	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	1209
EcoRII	CCWGG	2 cut(s)	148, 769
EcoT22I	ATGCAT	1 cut(s)	926
Esp3I	CGTCTC	2 cut(s)	81, 1160
FaeI	CATG	5 cut(s)	728, 901, 940, 1112, 1231
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	1 cut(s)	1211
FatI	CATG	5 cut(s)	724, 897, 936, 1108, 1227
FbaI	TGATCA	1 cut(s)	1105
Fnu4HI	GCNGC	4 cut(s)	390, 459, 1426, 1533
FokI	GGATG	1 cut(s)	933
Fsp4HI	GCNGC	4 cut(s)	390, 459, 1426, 1533
FspBI	CTAG	6 cut(s)	29, 230, 678, 837, 1127, 1181
GlaI	GCGC	1 cut(s)	1462
GluI	GCNGC	4 cut(s)	390, 459, 1426, 1533
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	3 cut(s)	620, 1326, 1364
HhaI	GCGC	1 cut(s)	1463
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	5 cut(s)	728, 901, 940, 1112, 1231
Hin6I	GCGC	1 cut(s)	1461
HinP1I	GCGC	1 cut(s)	1461
HindIII	AAGCTT	1 cut(s)	417
HpaII	CCGG	3 cut(s)	620, 1326, 1364
HphI	GGTGA	3 cut(s)	1001, 1013, 1057
Hpy166II	GTNNAC	2 cut(s)	215, 803
Hpy188I	TCNGA	5 cut(s)	133, 1041, 1308, 1315, 1444
Hpy8I	GTNNAC	2 cut(s)	215, 803
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	5 cut(s)	152, 293, 992, 1262, 1391
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	5 cut(s)	74, 236, 243, 360, 1026
HpyCH4V	TGCA	6 cut(s)	353, 458, 924, 946, 1151, 1472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 1028, 1469
HpySE526I	ACGT	5 cut(s)	74, 236, 243, 360, 1026
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	728, 901, 940, 1112, 1231
HspAI	GCGC	1 cut(s)	1461
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	6 cut(s)	268, 656, 673, 1105, 1444, 1464
LmnI	GCTCC	3 cut(s)	703, 1238, 1291
Lsp1109I	GCAGC	2 cut(s)	401, 470
LweI	GCATC	3 cut(s)	756, 911, 1306
MaeI	CTAG	6 cut(s)	29, 230, 678, 837, 1127, 1181
MaeII	ACGT	5 cut(s)	74, 236, 243, 360, 1026
MaeIII	GTNAC	2 cut(s)	692, 1082
MalI	GATC	6 cut(s)	270, 658, 675, 1107, 1446, 1466
MboI	GATC	6 cut(s)	268, 656, 673, 1105, 1444, 1464
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	7 cut(s)	153, 577, 613, 730, 1052, 1078, 1138
MlyI	GAGTC	3 cut(s)	594, 1257, 1501
MmeI	TCCRAC	1 cut(s)	1313
MnlI	CCTC	8 cut(s)	5, 242, 287, 354, 367, 645, 884, 1229
Mph1103I	ATGCAT	1 cut(s)	926
MseI	TTAA	5 cut(s)	273, 422, 561, 602, 1154
MslI	CAYNNNNRTG	1 cut(s)	39
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	3 cut(s)	620, 1326, 1364
MspR9I	CCNGG	2 cut(s)	150, 771
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	2 cut(s)	150, 771
MvnI	CGCG	3 cut(s)	1425, 1435, 1463
MwoI	GCNNNNNNNGC	3 cut(s)	467, 1028, 1469
NdeII	GATC	6 cut(s)	268, 656, 673, 1105, 1444, 1464
NlaIII	CATG	5 cut(s)	728, 901, 940, 1112, 1231
NlaIV	GGNNCC	2 cut(s)	195, 705
NmuCI	GTSAC	1 cut(s)	1082
NsiI	ATGCAT	1 cut(s)	926
NspI	RCATGY	1 cut(s)	940
NspV	TTCGAA	1 cut(s)	452
PagI	TCATGA	2 cut(s)	724, 1108
PceI	AGGCCT	1 cut(s)	187
PctI	GAATGC	1 cut(s)	460
PflFI	GACNNNGTC	1 cut(s)	1339
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	391, 460, 1427, 1534
PleI	GAGTC	3 cut(s)	593, 1256, 1500
PpsI	GAGTC	3 cut(s)	593, 1256, 1500
Ppu21I	YACGTR	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	148, 769
PspGI	CCWGG	2 cut(s)	148, 769
PspN4I	GGNNCC	2 cut(s)	195, 705
PsyI	GACNNNGTC	1 cut(s)	1339
RsaI	GTAC	3 cut(s)	682, 1301, 1360
RsaNI	GTAC	3 cut(s)	681, 1300, 1359
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	5 cut(s)	273, 422, 561, 602, 1154
SatI	GCNGC	4 cut(s)	390, 459, 1426, 1533
Sau3AI	GATC	6 cut(s)	268, 656, 673, 1105, 1444, 1464
ScaI	AGTACT	1 cut(s)	1301
SchI	GAGTC	3 cut(s)	594, 1257, 1501
ScrFI	CCNGG	2 cut(s)	150, 771
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	3 cut(s)	756, 911, 1306
SfcI	CTRYAG	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	3 cut(s)	560, 568, 1208
SmoI	CTYRAG	3 cut(s)	560, 568, 1208
Sse9I	AATT	7 cut(s)	153, 577, 613, 730, 1052, 1078, 1138
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	1425, 1435, 1532
SspMI	CTAG	6 cut(s)	29, 230, 678, 837, 1127, 1181
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	148, 769
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	5 cut(s)	77, 239, 246, 363, 1029
TaqI	TCGA	8 cut(s)	79, 173, 279, 452, 588, 627, 659, 787
TaqII	GACCGA	2 cut(s)	568, 1128
TasI	AATT	7 cut(s)	153, 577, 613, 730, 1052, 1078, 1138
TatI	WGTACW	2 cut(s)	680, 1299
TauI	GCSGC	2 cut(s)	1428, 1535
Tru1I	TTAA	5 cut(s)	273, 422, 561, 602, 1154
Tru9I	TTAA	5 cut(s)	273, 422, 561, 602, 1154
TseFI	GTSAC	1 cut(s)	1082
TseI	GCWGC	2 cut(s)	389, 458
Tsp45I	GTSAC	1 cut(s)	1082
TspDTI	ATGAA	4 cut(s)	17, 713, 1176, 1404
Tth111I	GACNNNGTC	1 cut(s)	1339
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	730
XceI	RCATGY	1 cut(s)	940
XcmI	CCANNNNNNNNNTGG	2 cut(s)	393, 983
XspI	CTAG	6 cut(s)	29, 230, 678, 837, 1127, 1181
ZraI	GACGTC	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	1301
Zsp2I	ATGCAT	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.