FvH4_1g21290

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
13284800 .. 13288368
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21290.t3

Sequence Viewer

Length: 1728 bp
ATGTCTTCCCATGGTGGAGATGCCAACTTCGATATGACCAAAGCCGCCGATGCCGTCGTCAGCACCAGGGCCACCGCCACCGCCACCCCTACAGCTACCCCTACCGCTACCCCCACCACACCTGATGGCTCCGTCAAGAACGAAAAGAAAAAGAAGTCGATCACATCTAGACTTTTTGGTTCAAAGCGAAATGGGCGTGAAAGCTCAGAATCAGAGGGGGATGGAGAAAGTGAGTTGGAGAAAAAGATTGCAGAAAGGAAAAAAGCTTTCATTGACGCAGCCCCGATCATGAGAAAGAGTTTTTCAGAAAGACAATCAAGTCCAGGGATTCAAAGCCTAAACTTATCAAACTTTGAACAACACTCTATGTTGCCATCAACTGAGACTAAAGAATTCAGGATATTCGTGGCGACATGGAATGTGGGAGGAAAGTCTCCCAACAATGGCCTCAACCTTGAAGATTTCTTGCAGGTTGAAGGCTCTTCAGATATCTATGTGTTAGGATTTCAGGAAATCGTACCTCTAAGTGCTGGAAACGTTCTAGTGATCGAGGACAACGAACCAGCTGCAAAATGGCTAACCCTTATAAGCCAAGCCCTAAATAAACCCCAAAATTCTTGCGCCTTTTGTTCTTCAGATTCTTCGGGTCATGGTTCCACCAAGTCATCACATAACAGTCTCAACTTTTTCCAAAAGCCTTCCCTCAAAGTTATCAGCAAAAGCTTCAAGGCAGACAGTAGAATTCTCAAGTCTTGCAACTGCCCCTTTGAATTTCCATCTCATGAAAGGCGGCGGCTAAGAAAACTCAGTGATCCACTCAATAAACTAGACTCCTCTAATGGTTCTTGTGATGGTAGGGTAGACGAATTTCTTGAAACTGCAGGGTTAGAATCACCGCCTTCCTCAAACGAGATGAGTTACTCTCTTCTAACAAGCAAGAAGATGGTGGGGATTTTCGTATCAGTTTGGGTTCGAAGAGAGTTGGTAAAACACGTTGGCCATCTTAGAGTCTCTACTGTAGGAAGAGGAATAATGGGTTACCTAGGAAACAAGGGATGCATATCGATAAGCATGACGTTGCACCAAACAAGCTTTTGTTTTGTGTGCAGTCACTTGGCTTCCGGCGAGAAGGAAGGCGATGAGCTGAAGAGGAATGCTGATGTGGTGGAGATACTTAAGGCCACACAATTCCCCAAGATTTGCAAGAATCCAAATCGTCTTCCTTGCGAAAAAATAGCTGACCACGATCGGGTAATATGGCTTGGAGATTTGAATTATCGTGTGGCTTTGAGCTACGAAGAAACAAGGGTTTTGTTGGAGGACAATGATTGGGATGCACTTCTTGAGAAAGATCAGTTGAATATAGAGAGAGAAGCTGGGAGAGTATTTAACGGGTTTCAAGAGGGACAAATCTACTTTGCCCCCACTTACAAGTATTCCCATAATTCAGATTCTTACGCAGGAGAAACTTCCAAGTCGAAGAAGAAACGACGAACCCCTGCATGGTGTGATAGGATACTATGGCGCGGTGAAGGTTTTGAACAGTTGTCCTATATTCGGGGTGAATCGAGGTTCTCCGATCACAGACCTGTTTGTGCTGTGTTTTCAGTTGAAGTGAACCTAATTAGGAACAAAGGCAACAGATTCAGAAAGGGTTATTCGTGTGCTGCTCCAAGATTCGAATTTGATGACTGCATGCCACAAAGACACAGCTTCTATGACTTCTAA

Protein Analysis

576

Amino Acids

64.29

Weight (kDa)

8.6

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 45 - 112 2.3e-06 Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2 PF22669 209 - 440 5.3e-66 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012202)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AasI GACNNNNNNGTC 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 861
AccII CGCG 1 cut(s) 1527
AciI CCGC 8 cut(s) 45, 75, 81, 105, 790, 793, 896, 1527
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 1 cut(s) 997
AcsI RAATTY 6 cut(s) 392, 613, 741, 770, 866, 1682
AcuI CTGAAG 3 cut(s) 468, 618, 1166
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 4 cut(s) 443, 1249, 1503, 1557
AflII CTTAAG 1 cut(s) 1175
AflIII ACRYGT 1 cut(s) 991
AjnI CCWGG 2 cut(s) 65, 322
Alw26I GTCTC 4 cut(s) 377, 438, 683, 1015
AlwI GGATC 1 cut(s) 806
AoxI GGCC 4 cut(s) 69, 445, 997, 1179
ApeKI GCWGC 3 cut(s) 278, 566, 1667
ApoI RAATTY 6 cut(s) 392, 613, 741, 770, 866, 1682
AspA2I CCTAGG 1 cut(s) 1042
AspLEI GCGC 2 cut(s) 623, 1527
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 885, 1541, 1574
AsuII TTCGAA 2 cut(s) 973, 1680
AvrII CCTAGG 1 cut(s) 1042
BalI TGGCCA 1 cut(s) 999
BbsI GAAGAC 1 cut(s) 1211
BbvI GCAGC 3 cut(s) 290, 553, 1654
BccI CCATC 7 cut(s) 119, 215, 382, 784, 845, 937, 1008
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 2 cut(s) 67, 324
BciVI GTATCC 1 cut(s) 1509
BcoDI GTCTC 4 cut(s) 377, 438, 683, 1015
BfaI CTAG 4 cut(s) 168, 542, 827, 1043
BfmI CTRYAG 3 cut(s) 90, 879, 1017
BfrI CTTAAG 1 cut(s) 1175
BfuAI ACCTGC 1 cut(s) 460
BfuI GTATCC 1 cut(s) 1509
BisI GCNGC 6 cut(s) 45, 279, 567, 791, 794, 1668
BlnI CCTAGG 1 cut(s) 1042
BlsI GCNGC 6 cut(s) 46, 280, 568, 792, 795, 1669
Bme1390I CCNGG 2 cut(s) 67, 324
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 2 cut(s) 130, 655
BmrFI CCNGG 2 cut(s) 67, 324
BmsI GCATC 4 cut(s) 10, 40, 1046, 1324
BpiI GAAGAC 1 cut(s) 1211
BplI GAGNNNNNCTC 2 cut(s) 907, 939
Bpu14I TTCGAA 2 cut(s) 973, 1680
BpuEI CTTGAG 2 cut(s) 731, 1364
Bsa29I ATCGAT 1 cut(s) 1064
BsaBI GATNNNNATC 1 cut(s) 1060
BsaJI CCNNGG 4 cut(s) 10, 66, 323, 1042
Bsc4I CCNNNNNNNGG 4 cut(s) 443, 1249, 1503, 1557
Bse8I GATNNNNATC 1 cut(s) 1060
BseBI CCWGG 2 cut(s) 67, 324
BseCI ATCGAT 1 cut(s) 1064
BseDI CCNNGG 4 cut(s) 10, 66, 323, 1042
BseGI GGATG 3 cut(s) 226, 1061, 1339
BseJI GATNNNNATC 1 cut(s) 1060
BseLI CCNNNNNNNGG 4 cut(s) 443, 1249, 1503, 1557
BseMII CTCAG 3 cut(s) 219, 372, 820
BseRI GAGGAG 1 cut(s) 823
BseXI GCAGC 3 cut(s) 290, 553, 1654
BseYI CCCAGC 1 cut(s) 1376
BsgI GTGCAG 1 cut(s) 1126
Bsh1236I CGCG 1 cut(s) 1527
Bsh1285I CGRYCG 1 cut(s) 1249
BshFI GGCC 4 cut(s) 71, 447, 999, 1181
BshVI ATCGAT 1 cut(s) 1064
BsiEI CGRYCG 1 cut(s) 1249
BsiSI CCGG 1 cut(s) 1122
BslFI GGGAC 1 cut(s) 1419
BslI CCNNNNNNNGG 4 cut(s) 443, 1249, 1503, 1557
BsmAI GTCTC 4 cut(s) 377, 438, 683, 1015
BsmFI GGGAC 1 cut(s) 1419
BsmI GAATGC 1 cut(s) 1159
BsnI GGCC 4 cut(s) 71, 447, 999, 1181
Bsp119I TTCGAA 2 cut(s) 973, 1680
Bsp143I GATC 7 cut(s) 159, 285, 546, 811, 1246, 1351, 1579
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 8 cut(s) 45, 75, 81, 105, 790, 793, 896, 1527
BspANI GGCC 4 cut(s) 71, 447, 999, 1181
BspCNI CTCAG 3 cut(s) 218, 373, 819
BspDI ATCGAT 1 cut(s) 1064
BspFNI CGCG 1 cut(s) 1527
BspHI TCATGA 2 cut(s) 288, 781
BspLI GGNNCC 2 cut(s) 130, 655
BspMAI CTGCAG 1 cut(s) 883
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 806
BspQI GCTCTTC 1 cut(s) 487
BspT104I TTCGAA 2 cut(s) 973, 1680
BspTI CTTAAG 1 cut(s) 1175
BssECI CCNNGG 4 cut(s) 10, 66, 323, 1042
BssMI GATC 7 cut(s) 159, 285, 546, 811, 1246, 1351, 1579
BssT1I CCWWGG 2 cut(s) 10, 1042
Bst2UI CCWGG 2 cut(s) 67, 324
Bst4CI ACNGT 4 cut(s) 677, 737, 1018, 1545
Bst6I CTCTTC 5 cut(s) 487, 930, 970, 1018, 1142
BstAFI CTTAAG 1 cut(s) 1175
BstBI TTCGAA 2 cut(s) 973, 1680
BstC8I GCNNGC 1 cut(s) 1697
BstDEI CTNAG 6 cut(s) 205, 381, 524, 797, 806, 1004
BstDSI CCRYGG 1 cut(s) 10
BstEII GGTNACC 1 cut(s) 1037
BstF5I GGATG 3 cut(s) 226, 1061, 1339
BstFNI CGCG 1 cut(s) 1527
BstHHI GCGC 2 cut(s) 623, 1527
BstKTI GATC 7 cut(s) 162, 288, 549, 814, 1249, 1354, 1582
BstMAI GTCTC 4 cut(s) 377, 438, 683, 1015
BstMBI GATC 7 cut(s) 159, 285, 546, 811, 1246, 1351, 1579
BstMCI CGRYCG 1 cut(s) 1249
BstMWI GCNNNNNNNGC 2 cut(s) 50, 193
BstNI CCWGG 2 cut(s) 67, 324
BstNSI RCATGY 1 cut(s) 1699
BstPI GGTNACC 1 cut(s) 1037
BstSCI CCNGG 2 cut(s) 65, 322
BstSFI CTRYAG 3 cut(s) 90, 879, 1017
BstUI CGCG 1 cut(s) 1527
BstV1I GCAGC 3 cut(s) 290, 553, 1654
BstV2I GAAGAC 1 cut(s) 1211
Bsu15I ATCGAT 1 cut(s) 1064
BsuI GTATCC 1 cut(s) 1509
BsuRI GGCC 4 cut(s) 71, 447, 999, 1181
BsuTUI ATCGAT 1 cut(s) 1064
BtgI CCRYGG 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 1152
BtsCI GGATG 3 cut(s) 226, 1061, 1339
BtsIMutI CAGTG 1 cut(s) 814
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 1697
CciI TCATGA 2 cut(s) 288, 781
CfoI GCGC 2 cut(s) 623, 1527
Cfr13I GGNCC 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 1064
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 518
CviAII CATG 8 cut(s) 11, 289, 414, 650, 782, 1072, 1503, 1696
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 6 cut(s) 205, 381, 524, 797, 806, 1004
DpnI GATC 7 cut(s) 161, 287, 548, 813, 1248, 1353, 1581
DpnII GATC 7 cut(s) 159, 285, 546, 811, 1246, 1351, 1579
DrdI GACNNNNNNGTC 1 cut(s) 318
DseDI GACNNNNNNGTC 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 997
Eam1104I CTCTTC 5 cut(s) 487, 930, 970, 1018, 1142
EarI CTCTTC 5 cut(s) 487, 930, 970, 1018, 1142
Eco130I CCWWGG 2 cut(s) 10, 1042
Eco32I GATATC 1 cut(s) 490
Eco57I CTGAAG 3 cut(s) 468, 618, 1166
Eco91I GGTNACC 1 cut(s) 1037
EcoO65I GGTNACC 1 cut(s) 1037
EcoRI GAATTC 2 cut(s) 392, 741
EcoRII CCWGG 2 cut(s) 65, 322
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 10, 1042
EcoT22I ATGCAT 1 cut(s) 1061
ErhI CCWWGG 2 cut(s) 10, 1042
FaeI CATG 8 cut(s) 14, 292, 417, 653, 785, 1075, 1506, 1699
FaqI GGGAC 1 cut(s) 1419
FatI CATG 8 cut(s) 10, 288, 413, 649, 781, 1071, 1502, 1695
FblI GTMKAC 1 cut(s) 861
Fnu4HI GCNGC 6 cut(s) 45, 279, 567, 791, 794, 1668
FokI GGATG 3 cut(s) 233, 1068, 1346
Fsp4HI GCNGC 6 cut(s) 45, 279, 567, 791, 794, 1668
FspBI CTAG 4 cut(s) 168, 542, 827, 1043
GlaI GCGC 2 cut(s) 622, 1526
GluI GCNGC 6 cut(s) 45, 279, 567, 791, 794, 1668
GsaI CCCAGC 1 cut(s) 1380
HaeIII GGCC 4 cut(s) 71, 447, 999, 1181
HapII CCGG 1 cut(s) 1122
HgaI GACGC 1 cut(s) 284
HhaI GCGC 2 cut(s) 623, 1527
Hin1II CATG 8 cut(s) 14, 292, 417, 653, 785, 1075, 1506, 1699
Hin6I GCGC 2 cut(s) 621, 1525
HinP1I GCGC 2 cut(s) 621, 1525
HindIII AAGCTT 3 cut(s) 264, 721, 1090
HpaII CCGG 1 cut(s) 1122
HphI GGTGA 3 cut(s) 885, 1541, 1574
Hpy166II GTNNAC 2 cut(s) 862, 1618
Hpy188I TCNGA 8 cut(s) 208, 214, 307, 487, 637, 1450, 1579, 1649
Hpy188III TCNNGA 9 cut(s) 136, 168, 289, 397, 509, 782, 872, 1343, 1400
Hpy8I GTNNAC 2 cut(s) 862, 1618
Hpy99I CGWCG 2 cut(s) 59, 1494
HpyAV CCTTC 6 cut(s) 470, 708, 909, 1123, 1127, 1526
HpyCH4III ACNGT 4 cut(s) 677, 737, 1018, 1545
HpyCH4IV ACGT 3 cut(s) 537, 993, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 193
HpyF3I CTNAG 6 cut(s) 205, 381, 524, 797, 806, 1004
HpySE526I ACGT 3 cut(s) 537, 993, 1076
Hsp92II CATG 8 cut(s) 14, 292, 417, 653, 785, 1075, 1506, 1699
HspAI GCGC 2 cut(s) 621, 1525
Kzo9I GATC 7 cut(s) 159, 285, 546, 811, 1246, 1351, 1579
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 2 cut(s) 134, 1675
Lsp1109I GCAGC 3 cut(s) 290, 553, 1654
LweI GCATC 4 cut(s) 10, 40, 1046, 1324
MaeI CTAG 4 cut(s) 168, 542, 827, 1043
MaeII ACGT 3 cut(s) 537, 993, 1076
MaeIII GTNAC 3 cut(s) 917, 1037, 1109
MalI GATC 7 cut(s) 161, 287, 548, 813, 1248, 1353, 1581
MboI GATC 7 cut(s) 159, 285, 546, 811, 1246, 1351, 1579
MlsI TGGCCA 1 cut(s) 999
MluNI TGGCCA 1 cut(s) 999
MlyI GAGTC 2 cut(s) 824, 1017
MmeI TCCRAC 2 cut(s) 216, 1296
Mox20I TGGCCA 1 cut(s) 999
Mph1103I ATGCAT 1 cut(s) 1061
MscI TGGCCA 1 cut(s) 999
MseI TTAA 2 cut(s) 1176, 1389
Msp20I TGGCCA 1 cut(s) 999
MspA1I CMGCKG 1 cut(s) 566
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 1 cut(s) 1122
MspR9I CCNGG 2 cut(s) 67, 324
Mva1269I GAATGC 1 cut(s) 1159
MvaI CCWGG 2 cut(s) 67, 324
MvnI CGCG 1 cut(s) 1527
MwoI GCNNNNNNNGC 2 cut(s) 50, 193
NcoI CCATGG 1 cut(s) 10
NdeII GATC 7 cut(s) 159, 285, 546, 811, 1246, 1351, 1579
NlaIII CATG 8 cut(s) 14, 292, 417, 653, 785, 1075, 1506, 1699
NlaIV GGNNCC 2 cut(s) 130, 655
NmuCI GTSAC 1 cut(s) 1109
NsiI ATGCAT 1 cut(s) 1061
NspI RCATGY 1 cut(s) 1699
NspV TTCGAA 2 cut(s) 973, 1680
PaeI GCATGC 1 cut(s) 1699
PagI TCATGA 2 cut(s) 288, 781
PciSI GCTCTTC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PctI GAATGC 1 cut(s) 1159
PfeI GAWTC 9 cut(s) 209, 328, 638, 890, 1207, 1451, 1565, 1644, 1677
PkrI GCNGC 6 cut(s) 46, 280, 568, 792, 795, 1669
Ple19I CGATCG 1 cut(s) 1249
PleI GAGTC 2 cut(s) 824, 1016
PpsI GAGTC 2 cut(s) 824, 1016
PsiI TTATAA 1 cut(s) 587
Psp1406I AACGTT 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 65, 322
PspEI GGTNACC 1 cut(s) 1037
PspFI CCCAGC 1 cut(s) 1376
PspGI CCWGG 2 cut(s) 65, 322
PspN4I GGNNCC 2 cut(s) 130, 655
PspPI GGNCC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 883
PvuI CGATCG 1 cut(s) 1249
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 2 cut(s) 1176, 1389
SatI GCNGC 6 cut(s) 45, 279, 567, 791, 794, 1668
Sau3AI GATC 7 cut(s) 159, 285, 546, 811, 1246, 1351, 1579
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 2 cut(s) 824, 1017
ScrFI CCNGG 2 cut(s) 67, 324
SfaNI GCATC 4 cut(s) 10, 40, 1046, 1324
SfcI CTRYAG 3 cut(s) 90, 879, 1017
SfuI TTCGAA 2 cut(s) 973, 1680
SmlI CTYRAG 3 cut(s) 746, 1175, 1343
SmoI CTYRAG 3 cut(s) 746, 1175, 1343
SphI GCATGC 1 cut(s) 1699
SsiI CCGC 8 cut(s) 45, 75, 81, 105, 790, 793, 896, 1527
SspMI CTAG 4 cut(s) 168, 542, 827, 1043
StyD4I CCNGG 2 cut(s) 65, 322
StyI CCWWGG 2 cut(s) 10, 1042
TaaI ACNGT 4 cut(s) 677, 737, 1018, 1545
TaiI ACGT 3 cut(s) 540, 996, 1079
TaqI TCGA 8 cut(s) 30, 158, 549, 973, 1064, 1478, 1568, 1680
TauI GCSGC 3 cut(s) 47, 793, 796
TfiI GAWTC 9 cut(s) 209, 328, 638, 890, 1207, 1451, 1565, 1644, 1677
Tru1I TTAA 2 cut(s) 1176, 1389
Tru9I TTAA 2 cut(s) 1176, 1389
TscAI CASTG 1 cut(s) 814
TseFI GTSAC 1 cut(s) 1109
TseI GCWGC 3 cut(s) 278, 566, 1667
Tsp45I GTSAC 1 cut(s) 1109
TspDTI ATGAA 2 cut(s) 259, 798
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 814
Vha464I CTTAAG 1 cut(s) 1175
XapI RAATTY 6 cut(s) 392, 613, 741, 770, 866, 1682
XbaI TCTAGA 1 cut(s) 167
XceI RCATGY 1 cut(s) 1699
XcmI CCANNNNNNNNNTGG 1 cut(s) 570
XmaJI CCTAGG 1 cut(s) 1042
XmiI GTMKAC 1 cut(s) 861
XspI CTAG 4 cut(s) 168, 542, 827, 1043
Zsp2I ATGCAT 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.