Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012202

Physical Location & Seq

Genomic Coordinates Reverse (-)

66833750 .. 66836306

Gene Structure 2557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTCTTCCCCTGGTGGAGATGCCAACCTCGATATGACCAAAGCCACCGATACCGTCATCATCACCAGCGACACCGCCGCCACACCTGATAGTTCCGTCAAGAACGAAAAGAAAAAGAAGTCTATCATTCCTAGACTTTTTGGTGCAAAGCGAACCGCGCGTGAAAGCTCAGAATCAGATGGTGATGGAGATCTCGGAGGAAAGTCTCCCAACAATGGCCTCAACCTTGAAGATTTCTTGCAGGTCGAAGGCTCTTCAGACATCTATGTGTTAGGGTTTCAGGAAATCGTACCTTTAAGTGCTGGAAACGTGTTAGTGATCGAGGACAACGAACCAGCTGCAAAATGGCTAACCCTTATAAGCCAAGCCCTAAATAAACCCCAGAATGCGTGCACCAATACGTTTTGTTGTTCTTCAGATTCTTCGAGTCATGGTTCCAATAAGTCCTCACATAACAAGGAATCCAAGTCCCCAGGCAGTCTCAACTTCTTTCAGAAGCCTTCTCTCAAAGTCATCAGCAAAAGCTTCAGGGCAGACAGTAGAATTCTCAAGTCTTGTAACTGCCCCTTTGAATTTCCATCTCGTGAAAGACGGCGGCTAAGAAAACTCAGTGATCCTGCAGATAGTAAATTAGACTCCTCATATGGTTCTTGTGACGGTAGCGTAGACGAATTTCTTGCAACTGCAGGGTTACAATCGCTGCCTTCCTCCGAGATGAGTTACTCTCTCATAACAAGCAAGAAGATGGTAGGGATTTTCGTATCAGTTTGGGTTCGAAGAGAGTTGGTACAACACGTTGGCCATCTTAGAGTTTCTACCGTGGGAAGAGGAATAATGGGTTGCCTTGGAAATAAGGGATGCATATCAATAAGCATGACGTTGCACCAAACAAGCTTTTGTTTCGTGTGCAGTCACTTGGCTTCCGGCGAGAAGGAAGGCGATGAACTGAAGAGGAATGCAGATGTGGTGGAGATCCTGAAGGGCACACAATTCCCCAAGATTTGCAAGAATCCAAATCGTCTTCCTTGCGAAAGAATAGTTGACCATGATCGGGTAATATGGCTAGGAGATTTGAATTATCGGGTGGCTTTGAGCTATGAAGAAACTAGGGTTTTGTTGGAGGACAATGACTGGGATGCACTTCTAGAGAAAGATCAGGTTGGTTCCTTCAATGCACCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0040007 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048364 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0052866 GO:0060560 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:0106019 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

394

Amino Acids

43.12

Weight (kDa)

6.41

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	233 - 387	9.8e-35	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65090 AT5G65090 AT5G65090
fragaria_vesca	FvH4_1g21290 FvH4_1g21290 FvH4_1g21290
malus_domestica	MD15G1327400.v1.1
prunus_persica	Prupe.6G181500_v2.0.a1
pyrus_communis	pycom15g29890
rosa_chinensis	RchiOBHm_Chr2g0115121
rosa_laevigata	RLG00000018160
rosa_multiflora	Rmu_sc0002784.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130600
rosa_rugosa	Rorug02G0193800
rosa_samantha	Rh2AG252200 Rh2BG261800 Rh2CG256800 Rh2DG260400
rosa_wichuraiana	Rw2G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	666
AccII	CGCG	2 cut(s)	158, 160
AciI	CCGC	4 cut(s)	75, 78, 156, 595
AclWI	GGATC	2 cut(s)	608, 967
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	3 cut(s)	543, 572, 671
AcuI	CTGAAG	5 cut(s)	240, 399, 511, 968, 998
AfaI	GTAC	2 cut(s)	291, 789
AfiI	CCNNNNNNNGG	2 cut(s)	215, 1051
AflIII	ACRYGT	2 cut(s)	309, 793
AgsI	TTSAA	4 cut(s)	230, 572, 1075, 1171
AjnI	CCWGG	2 cut(s)	10, 472
AluBI	AGCT	5 cut(s)	168, 338, 525, 894, 1095
AluI	AGCT	5 cut(s)	168, 338, 525, 894, 1095
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	210, 485
Alw44I	GTGCAC	1 cut(s)	391
AlwI	GGATC	2 cut(s)	608, 967
AoxI	GGCC	2 cut(s)	217, 799
ApaLI	GTGCAC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	338, 700
ApoI	RAATTY	3 cut(s)	543, 572, 671
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	55, 194
AsuII	TTCGAA	1 cut(s)	775
BaeGI	GKGCMC	2 cut(s)	395, 986
BalI	TGGCCA	1 cut(s)	801
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	1013
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	325, 687
BccI	CCATC	5 cut(s)	173, 179, 586, 739, 810
BceAI	ACGGC	1 cut(s)	608
BcgI	CGANNNNNNTGC	4 cut(s)	320, 354, 659, 693
BciT130I	CCWGG	2 cut(s)	12, 474
BcoDI	GTCTC	2 cut(s)	210, 485
BfaI	CTAG	5 cut(s)	132, 1064, 1107, 1145, 1183
BfmI	CTRYAG	2 cut(s)	618, 684
BfuAI	ACCTGC	1 cut(s)	232
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	4 cut(s)	78, 339, 596, 701
BlsI	GCNGC	4 cut(s)	79, 340, 597, 702
Bme1390I	CCNGG	2 cut(s)	12, 474
BmiI	GGNNCC	2 cut(s)	436, 1165
BmrFI	CCNGG	2 cut(s)	12, 474
BmrI	ACTGGG	1 cut(s)	1141
BmsI	GCATC	3 cut(s)	10, 848, 1126
BmuI	ACTGGG	1 cut(s)	1141
BpiI	GAAGAC	1 cut(s)	1013
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
Bpu14I	TTCGAA	1 cut(s)	775
BpuEI	CTTGAG	1 cut(s)	533
BsaBI	GATNNNNATC	2 cut(s)	189, 862
BsaJI	CCNNGG	4 cut(s)	10, 472, 819, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 1051
Bse1I	ACTGG	1 cut(s)	1136
Bse8I	GATNNNNATC	2 cut(s)	189, 862
BseBI	CCWGG	2 cut(s)	12, 474
BseDI	CCNNGG	4 cut(s)	10, 472, 819, 844
BseGI	GGATG	2 cut(s)	863, 1141
BseJI	GATNNNNATC	2 cut(s)	189, 862
BseLI	CCNNNNNNNGG	2 cut(s)	215, 1051
BseMII	CTCAG	2 cut(s)	183, 622
BseNI	ACTGG	1 cut(s)	1136
BseRI	GAGGAG	1 cut(s)	628
BseSI	GKGCMC	2 cut(s)	395, 986
BseXI	GCAGC	2 cut(s)	325, 687
BsgI	GTGCAG	1 cut(s)	928
Bsh1236I	CGCG	2 cut(s)	158, 160
BshFI	GGCC	2 cut(s)	219, 801
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	215, 1051
BsmAI	GTCTC	2 cut(s)	210, 485
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	2 cut(s)	391, 961
BsnI	GGCC	2 cut(s)	219, 801
Bsp119I	TTCGAA	1 cut(s)	775
Bsp1286I	GDGCHC	2 cut(s)	395, 986
Bsp143I	GATC	6 cut(s)	190, 318, 613, 972, 1048, 1153
BspACI	CCGC	4 cut(s)	75, 78, 156, 595
BspANI	GGCC	2 cut(s)	219, 801
BspCNI	CTCAG	2 cut(s)	182, 621
BspFNI	CGCG	2 cut(s)	158, 160
BspLI	GGNNCC	2 cut(s)	436, 1165
BspMAI	CTGCAG	2 cut(s)	622, 688
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	608, 967
BspQI	GCTCTTC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	1136
BssECI	CCNNGG	4 cut(s)	10, 472, 819, 844
BssMI	GATC	6 cut(s)	190, 318, 613, 972, 1048, 1153
BssSI	CACGAG	1 cut(s)	582
BssT1I	CCWWGG	1 cut(s)	844
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	12, 474
Bst4CI	ACNGT	4 cut(s)	55, 539, 659, 820
Bst6I	CTCTTC	4 cut(s)	259, 772, 820, 944
BstBI	TTCGAA	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	4 cut(s)	169, 599, 608, 806
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	2 cut(s)	863, 1141
BstFNI	CGCG	2 cut(s)	158, 160
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	6 cut(s)	193, 321, 616, 975, 1051, 1156
BstMAI	GTCTC	2 cut(s)	210, 485
BstMBI	GATC	6 cut(s)	190, 318, 613, 972, 1048, 1153
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	2 cut(s)	12, 474
BstSCI	CCNGG	2 cut(s)	10, 472
BstSFI	CTRYAG	2 cut(s)	618, 684
BstSLI	GKGCMC	2 cut(s)	395, 986
BstUI	CGCG	2 cut(s)	158, 160
BstV1I	GCAGC	2 cut(s)	325, 687
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	2 cut(s)	190, 972
BstYI	RGATCY	2 cut(s)	190, 972
BsuRI	GGCC	2 cut(s)	219, 801
BtgI	CCRYGG	1 cut(s)	819
BtgZI	GCGATG	1 cut(s)	954
BtsCI	GGATG	2 cut(s)	863, 1141
BtsIMutI	CAGTG	1 cut(s)	616
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	391
CfoI	GCGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	290, 788
CviAII	CATG	3 cut(s)	431, 874, 1046
CviQI	GTAC	2 cut(s)	290, 788
DdeI	CTNAG	4 cut(s)	169, 599, 608, 806
DpnI	GATC	6 cut(s)	192, 320, 615, 974, 1050, 1155
DpnII	GATC	6 cut(s)	190, 318, 613, 972, 1048, 1153
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	4 cut(s)	259, 772, 820, 944
EarI	CTCTTC	4 cut(s)	259, 772, 820, 944
Eco130I	CCWWGG	1 cut(s)	844
Eco57I	CTGAAG	5 cut(s)	240, 399, 511, 968, 998
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	10, 472
EcoT14I	CCWWGG	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	863
ErhI	CCWWGG	1 cut(s)	844
FaeI	CATG	3 cut(s)	434, 877, 1049
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	3 cut(s)	430, 873, 1045
FauNDI	CATATG	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	4 cut(s)	78, 339, 596, 701
FokI	GGATG	2 cut(s)	870, 1148
Fsp4HI	GCNGC	4 cut(s)	78, 339, 596, 701
FspBI	CTAG	5 cut(s)	132, 1064, 1107, 1145, 1183
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	4 cut(s)	78, 339, 596, 701
HaeIII	GGCC	2 cut(s)	219, 801
HapII	CCGG	1 cut(s)	924
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	434, 877, 1049
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	1042
HindII	GTYRAC	1 cut(s)	1042
HindIII	AAGCTT	2 cut(s)	523, 892
HinfI	GANTC	6 cut(s)	173, 419, 427, 461, 635, 1009
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	2 cut(s)	55, 194
Hpy166II	GTNNAC	3 cut(s)	393, 667, 1042
Hpy188I	TCNGA	7 cut(s)	172, 178, 197, 259, 418, 495, 712
Hpy188III	TCNNGA	5 cut(s)	100, 281, 584, 976, 1145
Hpy8I	GTNNAC	3 cut(s)	393, 667, 1042
HpyAV	CCTTC	7 cut(s)	242, 510, 714, 925, 929, 973, 1177
HpyCH4III	ACNGT	4 cut(s)	55, 539, 659, 820
HpyCH4IV	ACGT	4 cut(s)	309, 401, 795, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	4 cut(s)	169, 599, 608, 806
HpySE526I	ACGT	4 cut(s)	309, 401, 795, 878
Hsp92II	CATG	3 cut(s)	434, 877, 1049
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	6 cut(s)	190, 318, 613, 972, 1048, 1153
LguI	GCTCTTC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	325, 687
LweI	GCATC	3 cut(s)	10, 848, 1126
MaeI	CTAG	5 cut(s)	132, 1064, 1107, 1145, 1183
MaeII	ACGT	4 cut(s)	309, 401, 795, 878
MaeIII	GTNAC	5 cut(s)	557, 653, 690, 719, 911
MalI	GATC	6 cut(s)	192, 320, 615, 974, 1050, 1155
MboI	GATC	6 cut(s)	190, 318, 613, 972, 1048, 1153
MflI	RGATCY	2 cut(s)	190, 972
MhlI	GDGCHC	2 cut(s)	395, 986
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	6 cut(s)	543, 572, 629, 671, 989, 1075
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	2 cut(s)	436, 629
MmeI	TCCRAC	1 cut(s)	1098
Mox20I	TGGCCA	1 cut(s)	801
Mph1103I	ATGCAT	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	2 cut(s)	12, 474
Mva1269I	GAATGC	2 cut(s)	391, 961
MvaI	CCWGG	2 cut(s)	12, 474
MvnI	CGCG	2 cut(s)	158, 160
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	6 cut(s)	190, 318, 613, 972, 1048, 1153
NlaIII	CATG	3 cut(s)	434, 877, 1049
NlaIV	GGNNCC	2 cut(s)	436, 1165
NmuCI	GTSAC	2 cut(s)	653, 911
NsiI	ATGCAT	1 cut(s)	863
NspV	TTCGAA	1 cut(s)	775
PciSI	GCTCTTC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	2 cut(s)	391, 961
PfeI	GAWTC	4 cut(s)	173, 419, 461, 1009
PkrI	GCNGC	4 cut(s)	79, 340, 597, 702
PleI	GAGTC	2 cut(s)	435, 629
PpsI	GAGTC	2 cut(s)	435, 629
PsiI	TTATAA	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	10, 472
PspGI	CCWGG	2 cut(s)	10, 472
PspN4I	GGNNCC	2 cut(s)	436, 1165
PstI	CTGCAG	2 cut(s)	622, 688
PsuI	RGATCY	2 cut(s)	190, 972
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	291, 789
RsaNI	GTAC	2 cut(s)	290, 788
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	78, 339, 596, 701
Sau3AI	GATC	6 cut(s)	190, 318, 613, 972, 1048, 1153
SchI	GAGTC	2 cut(s)	436, 629
ScrFI	CCNGG	2 cut(s)	12, 474
SduI	GDGCHC	2 cut(s)	395, 986
SfaNI	GCATC	3 cut(s)	10, 848, 1126
SfcI	CTRYAG	2 cut(s)	618, 684
SfuI	TTCGAA	1 cut(s)	775
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	6 cut(s)	543, 572, 629, 671, 989, 1075
SsiI	CCGC	4 cut(s)	75, 78, 156, 595
SspMI	CTAG	5 cut(s)	132, 1064, 1107, 1145, 1183
StyD4I	CCNGG	2 cut(s)	10, 472
StyI	CCWWGG	1 cut(s)	844
TaaI	ACNGT	4 cut(s)	55, 539, 659, 820
TaiI	ACGT	4 cut(s)	312, 404, 798, 881
TaqI	TCGA	5 cut(s)	30, 246, 321, 425, 775
TasI	AATT	6 cut(s)	543, 572, 629, 671, 989, 1075
TauI	GCSGC	2 cut(s)	80, 598
TfiI	GAWTC	4 cut(s)	173, 419, 461, 1009
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	2 cut(s)	653, 911
TseI	GCWGC	2 cut(s)	338, 700
Tsp45I	GTSAC	2 cut(s)	653, 911
TspDTI	ATGAA	2 cut(s)	957, 1113
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	616
VneI	GTGCAC	1 cut(s)	391
XapI	RAATTY	3 cut(s)	543, 572, 671
XbaI	TCTAGA	1 cut(s)	1144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	5 cut(s)	132, 1064, 1107, 1145, 1183
Zsp2I	ATGCAT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.