AT5G67530

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26941074 .. 26944146
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67530.1

Sequence Viewer

Length: 1788 bp
ATGGGGAAGAAACAACACAGCAAAGATCGGATGTTCATAACGAAGACGGAGTGGGCAACAGAATGGGGAGGCGCTAAATCCAAAGAGAATCGAACTCCTTTCAAGAGTCTTCCTTACTATTGCTGCGCGCTTACGTTTTTGCCATTCGAAGATCCTGTGTGTACAATCGACGGGAGTGTTTTCGAGATAACAACAATAGTGCCTTACATTAGGAAATTTGGAAAACATCCTGTTACTGGAGCTCCATTGAAAGGAGAAGATCTAATTCCTCTCATCTTTCACAAGAACTCTGAAGGAGAGTATCATTGTCCTGTTCTAAACAAAGTCTTCACTGAATTTACACATATTGTTGCTGTCAAGACTACTGGAAATGTATTCTGCTACGAGGCAATCAAAGAGTTGAATATCAAAACCAAGAATTGGAAGGAGCTTTTAACTGAAGAACCATTTACAAGAGCCGACCTTATAACAATTCAGAATCCTAATGCAGTTGATGGTAAAGTGACGGTGGAGTTTGATCATGTTAAAAACGGTCTTAAGATCGATGATGAAGAGTTGAAAAAGATGAACTCAGACCCTGCTTATAATATAAACGTGTCTGGAGATATCAAGCACATGCTTGCAGATCTTGGAACTGATAAAGCTAAAGAGATTGCTTTACATGGTGGAGGTGGAAACAAGGCACGTAATGAAAGAGCCGCTGCTATTGCTGCGATTCTGGAGTCAAGATCGAAAATCAAAGAGGTTTCTAAAGCAGAACAACCGAAACAGACCTACAGTGTTGTTGATGCTGCATCTGCTTCGGTTTTTGGAAGAAGTGCTGATGCAGCTAAAGCTGGTTCTAGTGATAAAACAGCTGCAAGAATAGCTATGCATATGGCTGGAGATAGAACACCTGTTAATTCTAAAATGGTGAAGAGCCGTTATTCGTCGGGTGCTGCTTCTCGTTCTTTCACTTCCTCTGCCTTTACTCCTGTAACCAAAAACGATTTTGAACTAATTAAAGTCGAGAAAAACCCGAAAAAGAAAGGGTATGTTCAGTTTCAGACAACACATGGCGATTTGAACATTGAGCTCCATTGCGATATAGCTCCTAGAGCATGTGAGAATTTCATCACTCTCTGTGAACGTGGTTACTACAATGGAGTGGCCTTTCACAGAAGTATCAGGAACTTCATGATTCAAGGGGGCGATCCAACTGGCACAGGAAAAGGAGGTGAATCCATTTGGGGGAAGCCATTCAAAGACGAGCCAAACTCGAAGCTGCTTCACTCAGGAAGAGGCGTAGTTAGTATGGCTAATAGTGGACCTCACACAAATGGTTCTCAGTTTTTCGTCTTATACAAATCAGCGACCCATTTAAACTACAAGCACACAGTGTTTGGTGGAGTTGTTGGTGGTTTGGCAACACTAGCAGCAATGGAGAATGTACCTGTAGATGAAAGCGACCGTCCTCTTGAAGAGATTAAGATAATCGAGGCAAGTGTGTTTGTGAATCCATACACGGAGCTTGATGAAGAGGAAGAGAAAGAGAAAGCTGAGAAAGAGAAGAATGAAGACAAAGACATTGAGAAGATCGGGTCGTGGTACAGCAACCCGGGATCAGGAACAACAGAAGCTGGAGCGGGTGGCGGTGGTGTCGGAAAATACTTGAAAGCTATGAGTAGTACAGCCACTAAAGACACTAAAGGTTCCCTAGACTCAGATATTTCAACCATTGGAGTGTCTAAGAAAAGAAAAACTACTGCGTCAGCCTCCACAGGGTTTAAAGATTTCTCTAGCTGGTAA

Protein Analysis

595

Amino Acids

65.02

Weight (kDa)

8.34

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 345 - 495 1e-51 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67530
fragaria_vesca FvH4_1g17680
malus_domestica MD02G1185800.v1.1 MD15G1307700.v1.1
prunus_persica Prupe.6G220900_v2.0.a1
pyrus_communis pycom02g15080 pycom15g26020
rosa_chinensis RchiOBHm_Chr2g0108011
rosa_laevigata RLG00000017633
rosa_multiflora Rmu_sc0001484.1_g000022
rosa_roxburghii Rroxscaffold_2G00135730
rosa_rugosa Rorug02G0149700
rosa_samantha Rh2AG198700 Rh2BG211600 Rh2CG203300
rosa_wichuraiana Rw2G015770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 467, 585
AccB7I CCANNNNNTGG 1 cut(s) 420
AccBSI CCGCTC 1 cut(s) 1625
AccII CGCG 1 cut(s) 128
AciI CCGC 3 cut(s) 699, 1625, 1632
AclWI GGATC 3 cut(s) 146, 1187, 1609
AcsI RAATTY 3 cut(s) 215, 335, 1108
AcuI CTGAAG 2 cut(s) 312, 459
AdeI CACNNNGTG 1 cut(s) 1378
AfaI GTAC 4 cut(s) 163, 1431, 1589, 1669
AfiI CCNNNNNNNGG 6 cut(s) 236, 251, 420, 1230, 1604, 1761
AflII CTTAAG 1 cut(s) 536
AflIII ACRYGT 1 cut(s) 594
Alw21I GWGCWC 2 cut(s) 244, 1077
AlwI GGATC 3 cut(s) 146, 1187, 1609
AlwNI CAGNNNCTG 2 cut(s) 578, 1619
Ama87I CYCGRG 1 cut(s) 1597
AoxI GGCC 1 cut(s) 1149
ApeKI GCWGC 9 cut(s) 123, 701, 710, 791, 827, 857, 938, 1264, 1415
ApoI RAATTY 3 cut(s) 215, 335, 1108
Asp700I GAANNNNTTC 1 cut(s) 1238
AspLEI GCGC 3 cut(s) 74, 128, 130
AspS9I GGNCC 1 cut(s) 1307
AsuC2I CCSGG 2 cut(s) 1598, 1599
AsuHPI GGTGA 2 cut(s) 925, 1229
AsuII TTCGAA 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 1597
AvaII GGWCC 1 cut(s) 1307
BaeI ACNNNNGTAYC 2 cut(s) 1147, 1180
BanII GRGCYC 2 cut(s) 244, 1077
BbsI GAAGAC 4 cut(s) 50, 101, 319, 1563
Bbv12I GWGCWC 2 cut(s) 244, 1077
BbvI GCAGC 9 cut(s) 110, 688, 697, 778, 839, 844, 925, 1251, 1427
BccI CCATC 1 cut(s) 488
BceAI ACGGC 1 cut(s) 906
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 2 cut(s) 1598, 1599
BfaI CTAG 5 cut(s) 843, 1095, 1412, 1697, 1779
BfmI CTRYAG 2 cut(s) 775, 1434
BfoI RGCGCY 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 536
BglII AGATCT 2 cut(s) 259, 625
Bme1390I CCNGG 2 cut(s) 1598, 1599
Bme18I GGWCC 1 cut(s) 1307
BmeT110I CYCGRG 1 cut(s) 1597
BmgT120I GGNCC 1 cut(s) 1307
BmiI GGNNCC 1 cut(s) 1693
BmrFI CCNGG 2 cut(s) 1598, 1599
BmsI GCATC 3 cut(s) 778, 803, 814
BpiI GAAGAC 4 cut(s) 50, 101, 319, 1563
BplI GAGNNNNNCTC 2 cut(s) 1241, 1273
BpmI CTGGAG 5 cut(s) 258, 621, 740, 903, 1641
Bpu14I TTCGAA 1 cut(s) 147
BpuMI CCSGG 2 cut(s) 1598, 1599
Bsa29I ATCGAT 1 cut(s) 543
BsaAI YACGTR 1 cut(s) 686
BsaJI CCNNGG 1 cut(s) 1597
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 6 cut(s) 236, 251, 420, 1230, 1604, 1761
Bse1I ACTGG 3 cut(s) 241, 370, 1204
Bse3DI GCAATG 2 cut(s) 1078, 1425
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 1597
BseGI GGATG 2 cut(s) 36, 226
BseLI CCNNNNNNNGG 6 cut(s) 236, 251, 420, 1230, 1604, 1761
BseMI GCAATG 2 cut(s) 1078, 1425
BseMII CTCAG 5 cut(s) 585, 1287, 1340, 1530, 1716
BseNI ACTGG 3 cut(s) 241, 370, 1204
BsePI GCGCGC 1 cut(s) 126
BseXI GCAGC 9 cut(s) 110, 688, 697, 778, 839, 844, 925, 1251, 1427
Bsh1236I CGCG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 1450
BshFI GGCC 1 cut(s) 1151
BshVI ATCGAT 1 cut(s) 543
BsiEI CGRYCG 1 cut(s) 1450
BsiHKAI GWGCWC 2 cut(s) 244, 1077
BsiHKCI CYCGRG 1 cut(s) 1597
BsiSI CCGG 1 cut(s) 1598
BslI CCNNNNNNNGG 6 cut(s) 236, 251, 420, 1230, 1604, 1761
BsnI GGCC 1 cut(s) 1151
BsoBI CYCGRG 1 cut(s) 1597
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 244, 1077
Bsp1407I TGTACA 1 cut(s) 161
BspACI CCGC 3 cut(s) 699, 1625, 1632
BspANI GGCC 1 cut(s) 1151
BspCNI CTCAG 5 cut(s) 584, 1286, 1339, 1531, 1715
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 1 cut(s) 128
BspHI TCATGA 1 cut(s) 1176
BspLI GGNNCC 1 cut(s) 1693
BspPI GGATC 3 cut(s) 146, 1187, 1609
BspQI GCTCTTC 1 cut(s) 911
BspT104I TTCGAA 1 cut(s) 147
BspTI CTTAAG 1 cut(s) 536
BsrBI CCGCTC 1 cut(s) 1625
BsrDI GCAATG 2 cut(s) 1078, 1425
BsrGI TGTACA 1 cut(s) 161
BsrI ACTGG 3 cut(s) 241, 370, 1204
BssECI CCNNGG 1 cut(s) 1597
BssHII GCGCGC 1 cut(s) 126
Bst4CI ACNGT 5 cut(s) 508, 533, 779, 1378, 1451
Bst6I CTCTTC 6 cut(s) 546, 911, 1273, 1455, 1512, 1518
BstAFI CTTAAG 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 686
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 128, 621
BstDEI CTNAG 6 cut(s) 571, 1273, 1326, 1539, 1702, 1728
BstF5I GGATG 2 cut(s) 36, 226
BstFNI CGCG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 3 cut(s) 74, 128, 130
BstMCI CGRYCG 1 cut(s) 1450
BstMWI GCNNNNNNNGC 8 cut(s) 707, 710, 797, 827, 833, 866, 1097, 1412
BstNSI RCATGY 2 cut(s) 619, 1104
BstSCI CCNGG 2 cut(s) 1596, 1597
BstSFI CTRYAG 2 cut(s) 775, 1434
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 9 cut(s) 110, 688, 697, 778, 839, 844, 925, 1251, 1427
BstV2I GAAGAC 4 cut(s) 50, 101, 319, 1563
BstX2I RGATCY 3 cut(s) 151, 259, 625
BstYI RGATCY 3 cut(s) 151, 259, 625
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 1 cut(s) 1151
BsuTUI ATCGAT 1 cut(s) 543
BtsCI GGATG 2 cut(s) 36, 226
BtsIMutI CAGTG 3 cut(s) 330, 784, 1383
Cac8I GCNNGC 2 cut(s) 128, 621
CaiI CAGNNNCTG 2 cut(s) 578, 1619
CciI TCATGA 1 cut(s) 1176
CfoI GCGC 3 cut(s) 74, 128, 130
Cfr13I GGNCC 1 cut(s) 1307
Cfr9I CCCGGG 1 cut(s) 1597
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 1 cut(s) 1737
Csp6I GTAC 4 cut(s) 162, 1430, 1588, 1668
CviAII CATG 6 cut(s) 521, 616, 662, 1055, 1101, 1177
CviQI GTAC 4 cut(s) 162, 1430, 1588, 1668
DdeI CTNAG 6 cut(s) 571, 1273, 1326, 1539, 1702, 1728
DraI TTTAAA 2 cut(s) 1362, 1768
DraIII CACNNNGTG 1 cut(s) 1378
Eam1104I CTCTTC 6 cut(s) 546, 911, 1273, 1455, 1512, 1518
EarI CTCTTC 6 cut(s) 546, 911, 1273, 1455, 1512, 1518
Ecl136II GAGCTC 2 cut(s) 242, 1075
Eco24I GRGCYC 2 cut(s) 244, 1077
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 1307
Eco53kI GAGCTC 2 cut(s) 242, 1075
Eco57I CTGAAG 2 cut(s) 312, 459
Eco88I CYCGRG 1 cut(s) 1597
EcoICRI GAGCTC 2 cut(s) 242, 1075
EcoRV GATATC 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 876
EcoT38I GRGCYC 2 cut(s) 244, 1077
FaeI CATG 6 cut(s) 524, 619, 665, 1058, 1104, 1180
FatI CATG 6 cut(s) 520, 615, 661, 1054, 1100, 1176
FauI CCCGC 1 cut(s) 1618
FauNDI CATATG 1 cut(s) 876
FbaI TGATCA 1 cut(s) 517
FokI GGATG 2 cut(s) 43, 213
FriOI GRGCYC 2 cut(s) 244, 1077
FspBI CTAG 5 cut(s) 843, 1095, 1412, 1697, 1779
GlaI GCGC 3 cut(s) 73, 127, 129
GsuI CTGGAG 5 cut(s) 258, 621, 740, 903, 1641
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 1151
HapII CCGG 1 cut(s) 1598
HgaI GACGC 1 cut(s) 1737
HhaI GCGC 3 cut(s) 74, 128, 130
Hin1II CATG 6 cut(s) 524, 619, 665, 1058, 1104, 1180
Hin6I GCGC 3 cut(s) 72, 126, 128
HinP1I GCGC 3 cut(s) 72, 126, 128
HinfI GANTC 9 cut(s) 88, 106, 478, 715, 722, 1180, 1220, 1495, 1700
HpaII CCGG 1 cut(s) 1598
HphI GGTGA 2 cut(s) 925, 1229
Hpy166II GTNNAC 3 cut(s) 162, 1127, 1307
Hpy188I TCNGA 7 cut(s) 30, 292, 477, 574, 1047, 1643, 1705
Hpy8I GTNNAC 3 cut(s) 162, 1127, 1307
Hpy99I CGWCG 2 cut(s) 173, 934
HpyAV CCTTC 2 cut(s) 287, 418
HpyCH4III ACNGT 5 cut(s) 508, 533, 779, 1378, 1451
HpyCH4IV ACGT 4 cut(s) 134, 594, 685, 1129
HpyCH4V TGCA 6 cut(s) 488, 623, 794, 827, 860, 874
HpyF10VI GCNNNNNNNGC 8 cut(s) 707, 710, 797, 827, 833, 866, 1097, 1412
HpyF3I CTNAG 6 cut(s) 571, 1273, 1326, 1539, 1702, 1728
HpySE526I ACGT 4 cut(s) 134, 594, 685, 1129
Hsp92II CATG 6 cut(s) 524, 619, 665, 1058, 1104, 1180
HspAI GCGC 3 cut(s) 72, 126, 128
Ksp22I TGATCA 1 cut(s) 517
LguI GCTCTTC 1 cut(s) 911
LmnI GCTCC 7 cut(s) 239, 247, 427, 1080, 1096, 1507, 1622
Lsp1109I GCAGC 9 cut(s) 110, 688, 697, 778, 839, 844, 925, 1251, 1427
LweI GCATC 3 cut(s) 778, 803, 814
MaeI CTAG 5 cut(s) 843, 1095, 1412, 1697, 1779
MaeII ACGT 4 cut(s) 134, 594, 685, 1129
MaeIII GTNAC 4 cut(s) 232, 502, 976, 1133
MbiI CCGCTC 1 cut(s) 1625
MflI RGATCY 3 cut(s) 151, 259, 625
MhlI GDGCHC 2 cut(s) 244, 1077
MluCI AATT 8 cut(s) 215, 264, 335, 418, 471, 901, 999, 1108
MlyI GAGTC 3 cut(s) 115, 731, 1694
MmeI TCCRAC 2 cut(s) 1220, 1621
Mph1103I ATGCAT 1 cut(s) 876
MroXI GAANNNNTTC 1 cut(s) 1238
MseI TTAA 8 cut(s) 434, 525, 537, 900, 1002, 1361, 1467, 1767
MslI CAYNNNNRTG 2 cut(s) 1317, 1721
MspA1I CMGCKG 2 cut(s) 701, 857
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 1 cut(s) 1598
MspR9I CCNGG 2 cut(s) 1598, 1599
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 8 cut(s) 707, 710, 797, 827, 833, 866, 1097, 1412
NciI CCSGG 2 cut(s) 1598, 1599
NdeI CATATG 1 cut(s) 876
NlaIII CATG 6 cut(s) 524, 619, 665, 1058, 1104, 1180
NlaIV GGNNCC 1 cut(s) 1693
NmuCI GTSAC 1 cut(s) 502
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 2 cut(s) 619, 1104
NspV TTCGAA 1 cut(s) 147
PagI TCATGA 1 cut(s) 1176
PauI GCGCGC 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 911
PdmI GAANNNNTTC 1 cut(s) 1238
PfeI GAWTC 6 cut(s) 88, 478, 715, 1180, 1220, 1495
PflMI CCANNNNNTGG 1 cut(s) 420
PleI GAGTC 3 cut(s) 114, 730, 1694
PpsI GAGTC 3 cut(s) 114, 730, 1694
Ppu21I YACGTR 1 cut(s) 686
PsiI TTATAA 2 cut(s) 467, 585
Psp124BI GAGCTC 2 cut(s) 244, 1077
PspN4I GGNNCC 1 cut(s) 1693
PspPI GGNCC 1 cut(s) 1307
PstNI CAGNNNCTG 2 cut(s) 578, 1619
PsuI RGATCY 3 cut(s) 151, 259, 625
PteI GCGCGC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 4 cut(s) 163, 1431, 1589, 1669
RsaNI GTAC 4 cut(s) 162, 1430, 1588, 1668
RseI CAYNNNNRTG 2 cut(s) 1317, 1721
SacI GAGCTC 2 cut(s) 244, 1077
SapI GCTCTTC 1 cut(s) 911
SaqAI TTAA 8 cut(s) 434, 525, 537, 900, 1002, 1361, 1467, 1767
Sau96I GGNCC 1 cut(s) 1307
SchI GAGTC 3 cut(s) 115, 731, 1694
ScrFI CCNGG 2 cut(s) 1598, 1599
SduI GDGCHC 2 cut(s) 244, 1077
SfaNI GCATC 3 cut(s) 778, 803, 814
SfcI CTRYAG 2 cut(s) 775, 1434
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 1307
SmaI CCCGGG 1 cut(s) 1599
SmiMI CAYNNNNRTG 2 cut(s) 1317, 1721
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 8 cut(s) 215, 264, 335, 418, 471, 901, 999, 1108
SsiI CCGC 3 cut(s) 699, 1625, 1632
SspMI CTAG 5 cut(s) 843, 1095, 1412, 1697, 1779
SstI GAGCTC 2 cut(s) 244, 1077
StyD4I CCNGG 2 cut(s) 1596, 1597
TaaI ACNGT 5 cut(s) 508, 533, 779, 1378, 1451
TaiI ACGT 4 cut(s) 137, 597, 688, 1132
TaqI TCGA 9 cut(s) 91, 147, 168, 183, 543, 731, 1008, 1259, 1476
TasI AATT 8 cut(s) 215, 264, 335, 418, 471, 901, 999, 1108
TatI WGTACW 2 cut(s) 161, 1667
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 6 cut(s) 88, 478, 715, 1180, 1220, 1495
Tru1I TTAA 8 cut(s) 434, 525, 537, 900, 1002, 1361, 1467, 1767
Tru9I TTAA 8 cut(s) 434, 525, 537, 900, 1002, 1361, 1467, 1767
TscAI CASTG 3 cut(s) 337, 784, 1383
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 9 cut(s) 123, 701, 710, 791, 827, 857, 938, 1264, 1415
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 9 cut(s) 25, 564, 581, 705, 1102, 1165, 1455, 1530, 1569
TspGWI ACGGA 2 cut(s) 62, 1520
TspMI CCCGGG 1 cut(s) 1597
TspRI CASTG 3 cut(s) 337, 784, 1383
Van91I CCANNNNNTGG 1 cut(s) 420
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 1307
XapI RAATTY 3 cut(s) 215, 335, 1108
XceI RCATGY 2 cut(s) 619, 1104
XmaI CCCGGG 1 cut(s) 1597
XmnI GAANNNNTTC 1 cut(s) 1238
XspI CTAG 5 cut(s) 843, 1095, 1412, 1697, 1779
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.