pycom02g15080

Peptidyl-prolyl cis-trans isomerase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015177
Physical Location & Seq
Forward (+)
11798030 .. 11802120
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g15080.2

Sequence Viewer

Length: 1797 bp
ATGGGGAAGAAGCAGCACAGCAAAGATCGAATGTTCATAACCAAAACGGAGTGGGCCACAGAATGGGGCGGCGCCAAAGCCCAGCCCACCTCCACTCCCTTCAAGCGCCTCCTCTTCTATTGCTGCGCGCTTACGTTTACGCCTTTTGAAGATCCAGTGTGCACCGCAGACGGCAGTGTTTTTGATATACTGAATATAATTCCATATATCAGAAAGTATGGGAAGCATCCTGTTACTGGAGCTCCGCTGAAGCAGGAGGAGCTCATACCGCTAACGTTCCACAAGAATTCTGATGGAGAGTTTCAGTGTCCTGTTTTGAACAAAGTTTTCACTGAATTTACACACATAGTGGCAGTGAAGACAACTGGAAATGTCTTCTCCTATGAGGCAGTTAAAGAACTCAACATCAAGACCAAGAATTGGAAGGAGCTCCTCACAGATGAACCATTTTCCAAGGAAGACCTGATAACCATTCAGAATCCCAATGCACTTGACAGCAAGGTCCTTGTGGAGTTCGATCATGTTAAAAATAGTCTGAAAATTGACGATGAAGATTTTAAGAGAATGAGTGCAGACCCAACCTATAATATAAATGTAAATGGAGATATCAAGCAGATGCTCAAAGAGCTTGGAACTGAAAAAGGAAGGCTAGCTGCACTGCATGGAGGAGGTGGTAGCAAGGCACAAAATGAACGGGCTGCTGCACTTGAAGCCATTTTAGCTGCAAGATCACGTATTAAAGAGGATCCGAAATCAAAACCGAATGGGGAGGTGAAAGCTCAGGCATATAGTATTGTGGATGCTGCTTCTGCTTCTGTGCATGGAAGAAGTGCTGCCGCCGCCAGAGCCACATCAAGTGACAAAACGGCTGCCCGAATAGCTATGCACAAGGCTGGTGAAAGGGCACCAGTGAATGCAAAGATGGTAAAGAGCAGATTCACCACTGGCGCTGCTTCGAGGTCTTTCACTTCTACCGCCTTTACTCCTGTTACTGAAAATGAATATGAATATGTCAAAGTTGAGAAGAATCCAAAAAAGAAAGGATATGTACAGCTACATACAACACATGGTGATCTGAACATTGAGCTACACTGTGATATAGCCCCCAGAGCTTGCGAGAACTTCATCACTCTTTGTGAACGTGGCTATTATAATGGAGTAGGTTTTCATAGAAGCATTAGGAATTTTATGATTCAAGGTGGTGATCCTACTGGAACCGGGACAGGAGGGGAATCTATATGGGGAAAGCCTTTTAATGATGAAGTGAACTCCAAGTTACTTCACTCTGGAAGGGGTGTTGTCAGCATGGCTAACAGTGGGCCGCACACTAATGGCTCCCAATTTTTCATCCTTTACAAATCTGCAAATCATTTGAACTACAAGCACACGGTTTTTGGTGGAGTTGTTGGTGGGTTGACCACGTTGGCAGCAATGGAAAAGGTTCCCGTTGATGACAATGACCGACCTTTGGAGAAAATTGAGATAACAAGCGTCACAATTTTTGTTAACCCTTACACGGAACCTGATGAAGAAGAAGAAGAAAAGGCCAAAGCTGAGGAGAAAGCTCAGGATGAAGATAATGACAAGGTCGGGTCTTGGTATAGCAACCCTGGTACGGGAACAGAATCTGGCACTGGTGGTGGTGGCGGTGGTGGTGGTGTTGGGAAGTATTTGAAAGCAAGGAATGCTCGACCTGAATCCACAGCTGTTGATGCTGGTCTGACAGAGCTTCCTTCGACAAAGAAAAGAAAATCAGGAGCTTCCGCGTCAAATTTTAATGATTTTTCTTCATGGTAG

Protein Analysis

599

Amino Acids

65.25

Weight (kDa)

7.63

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67530
fragaria_vesca FvH4_1g17680
malus_domestica MD02G1185800.v1.1 MD15G1307700.v1.1
prunus_persica Prupe.6G220900_v2.0.a1
pyrus_communis pycom02g15080 pycom15g26020
rosa_chinensis RchiOBHm_Chr2g0108011
rosa_laevigata RLG00000017633
rosa_multiflora Rmu_sc0001484.1_g000022
rosa_roxburghii Rroxscaffold_2G00135730
rosa_rugosa Rorug02G0149700
rosa_samantha Rh2AG198700 Rh2BG211600 Rh2CG203300
rosa_wichuraiana Rw2G015770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1152
AasI GACNNNNNNGTC 1 cut(s) 500
AccB1I GGYRCC 2 cut(s) 71, 904
AccB7I CCANNNNNTGG 2 cut(s) 63, 420
AccII CGCG 2 cut(s) 128, 1766
AclI AACGTT 1 cut(s) 275
AclWI GGATC 4 cut(s) 146, 740, 753, 1199
AcsI RAATTY 4 cut(s) 286, 335, 1183, 1771
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 2 cut(s) 349, 1070
AfaI GTAC 2 cut(s) 1050, 1615
AfiI CCNNNNNNNGG 7 cut(s) 63, 236, 420, 1468, 1516, 1615, 1616
AgsI TTSAA 7 cut(s) 103, 149, 319, 710, 1196, 1375, 1675
AjnI CCWGG 1 cut(s) 1609
Alw21I GWGCWC 4 cut(s) 164, 244, 264, 432
Alw44I GTGCAC 1 cut(s) 160
AlwI GGATC 4 cut(s) 146, 740, 753, 1199
AlwNI CAGNNNCTG 1 cut(s) 1628
AoxI GGCC 3 cut(s) 54, 1319, 1545
ApaLI GTGCAC 1 cut(s) 160
ApoI RAATTY 4 cut(s) 286, 335, 1183, 1771
Asp700I GAANNNNTTC 1 cut(s) 1440
AspLEI GCGC 5 cut(s) 74, 108, 128, 130, 950
AspS9I GGNCC 3 cut(s) 54, 502, 1319
AsuC2I CCSGG 1 cut(s) 1219
AsuHPI GGTGA 5 cut(s) 784, 908, 931, 1082, 1214
AsuNHI GCTAGC 1 cut(s) 649
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 2 cut(s) 164, 907
BamHI GGATCC 1 cut(s) 745
BanI GGYRCC 2 cut(s) 71, 904
BanII GRGCYC 3 cut(s) 244, 264, 432
BbsI GAAGAC 3 cut(s) 365, 367, 465
Bbv12I GWGCWC 4 cut(s) 164, 244, 264, 432
BbvCI CCTCAGC 1 cut(s) 1554
BccI CCATC 2 cut(s) 287, 916
BceAI ACGGC 2 cut(s) 187, 882
BciT130I CCWGG 1 cut(s) 1611
BcnI CCSGG 1 cut(s) 1219
BfaI CTAG 1 cut(s) 650
BfoI RGCGCY 3 cut(s) 75, 109, 951
Bme1390I CCNGG 2 cut(s) 1219, 1611
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 3 cut(s) 54, 502, 1319
BmiI GGNNCC 7 cut(s) 73, 747, 906, 1216, 1336, 1443, 1521
BmrFI CCNGG 2 cut(s) 1219, 1611
BmsI GCATC 4 cut(s) 235, 606, 790, 1702
BmtI GCTAGC 1 cut(s) 653
BpiI GAAGAC 3 cut(s) 365, 367, 465
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 3 cut(s) 780, 1554, 1566
BpuMI CCSGG 1 cut(s) 1219
BsaAI YACGTR 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 453, 1609
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 226, 256
Bsc4I CCNNNNNNNGG 7 cut(s) 63, 236, 420, 1468, 1516, 1615, 1616
Bse1I ACTGG 7 cut(s) 155, 241, 370, 908, 949, 1216, 1639
Bse3DI GCAATG 1 cut(s) 1437
BseBI CCWGG 1 cut(s) 1611
BseDI CCNNGG 2 cut(s) 453, 1609
BseGI GGATG 4 cut(s) 226, 805, 1347, 1576
BseLI CCNNNNNNNGG 7 cut(s) 63, 236, 420, 1468, 1516, 1615, 1616
BseMI GCAATG 1 cut(s) 1437
BseMII CTCAG 3 cut(s) 794, 1545, 1580
BseNI ACTGG 7 cut(s) 155, 241, 370, 908, 949, 1216, 1639
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 5 cut(s) 101, 272, 422, 681, 1571
BseSI GKGCMC 2 cut(s) 164, 907
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 3 cut(s) 591, 639, 687
Bsh1236I CGCG 2 cut(s) 128, 1766
BshFI GGCC 3 cut(s) 56, 1321, 1547
BshNI GGYRCC 2 cut(s) 71, 904
BsiHKAI GWGCWC 4 cut(s) 164, 244, 264, 432
BsiSI CCGG 1 cut(s) 1218
BslFI GGGAC 1 cut(s) 1234
BslI CCNNNNNNNGG 7 cut(s) 63, 236, 420, 1468, 1516, 1615, 1616
BsmFI GGGAC 1 cut(s) 1234
BsmI GAATGC 2 cut(s) 919, 1690
BsnI GGCC 3 cut(s) 56, 1321, 1547
Bsp1286I GDGCHC 5 cut(s) 164, 244, 264, 432, 907
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 7 cut(s) 25, 151, 517, 728, 745, 1072, 1204
BspANI GGCC 3 cut(s) 56, 1321, 1547
BspCNI CTCAG 3 cut(s) 793, 1546, 1579
BspFNI CGCG 2 cut(s) 128, 1766
BspLI GGNNCC 7 cut(s) 73, 747, 906, 1216, 1336, 1443, 1521
BspOI GCTAGC 1 cut(s) 653
BspPI GGATC 4 cut(s) 146, 740, 753, 1199
BspT107I GGYRCC 2 cut(s) 71, 904
BsrDI GCAATG 1 cut(s) 1437
BsrGI TGTACA 1 cut(s) 1048
BsrI ACTGG 7 cut(s) 155, 241, 370, 908, 949, 1216, 1639
BssECI CCNNGG 2 cut(s) 453, 1609
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 7 cut(s) 25, 151, 517, 728, 745, 1072, 1204
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 1611
Bst4CI ACNGT 3 cut(s) 1094, 1316, 1390
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 1685
BstAUI TGTACA 1 cut(s) 1048
BstBAI YACGTR 1 cut(s) 734
BstC8I GCNNGC 3 cut(s) 128, 651, 1114
BstDEI CTNAG 3 cut(s) 780, 1554, 1566
BstF5I GGATG 4 cut(s) 226, 805, 1347, 1576
BstFNI CGCG 2 cut(s) 128, 1766
BstH2I RGCGCY 3 cut(s) 75, 109, 951
BstHHI GCGC 5 cut(s) 74, 108, 128, 130, 950
BstKTI GATC 7 cut(s) 28, 154, 520, 731, 748, 1075, 1207
BstMBI GATC 7 cut(s) 25, 151, 517, 728, 745, 1072, 1204
BstNI CCWGG 1 cut(s) 1611
BstSCI CCNGG 2 cut(s) 1217, 1609
BstSLI GKGCMC 2 cut(s) 164, 907
BstUI CGCG 2 cut(s) 128, 1766
BstV2I GAAGAC 3 cut(s) 365, 367, 465
BstX2I RGATCY 2 cut(s) 151, 745
BstYI RGATCY 2 cut(s) 151, 745
BsuRI GGCC 3 cut(s) 56, 1321, 1547
BtsCI GGATG 4 cut(s) 226, 805, 1347, 1576
BtsI GCAGTG 3 cut(s) 181, 360, 656
Cac8I GCNNGC 3 cut(s) 128, 651, 1114
CaiI CAGNNNCTG 1 cut(s) 1628
CfoI GCGC 5 cut(s) 74, 108, 128, 130, 950
Cfr13I GGNCC 3 cut(s) 54, 502, 1319
CseI GACGC 2 cut(s) 1480, 1755
Csp6I GTAC 2 cut(s) 1049, 1614
CspCI CAANNNNNGTGG 2 cut(s) 1690, 1725
CviAII CATG 6 cut(s) 521, 662, 821, 1067, 1306, 1791
CviQI GTAC 2 cut(s) 1049, 1614
DdeI CTNAG 3 cut(s) 780, 1554, 1566
DinI GGCGCC 1 cut(s) 73
DpnI GATC 7 cut(s) 27, 153, 519, 730, 747, 1074, 1206
DpnII GATC 7 cut(s) 25, 151, 517, 728, 745, 1072, 1204
DraIII CACNNNGTG 2 cut(s) 349, 1070
DrdI GACNNNNNNGTC 1 cut(s) 500
DseDI GACNNNNNNGTC 1 cut(s) 500
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Ecl136II GAGCTC 3 cut(s) 242, 262, 430
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 3 cut(s) 244, 264, 432
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 502
Eco53kI GAGCTC 3 cut(s) 242, 262, 430
Eco57I CTGAAG 1 cut(s) 269
EcoICRI GAGCTC 3 cut(s) 242, 262, 430
EcoO109I RGGNCCY 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 1609
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 3 cut(s) 244, 264, 432
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 6 cut(s) 524, 665, 824, 1070, 1309, 1794
FaqI GGGAC 1 cut(s) 1234
FatI CATG 6 cut(s) 520, 661, 820, 1066, 1305, 1790
FokI GGATG 4 cut(s) 213, 812, 1334, 1583
FriOI GRGCYC 3 cut(s) 244, 264, 432
FspBI CTAG 1 cut(s) 650
GlaI GCGC 5 cut(s) 73, 107, 127, 129, 949
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 258
HaeII RGCGCY 3 cut(s) 75, 109, 951
HaeIII GGCC 3 cut(s) 56, 1321, 1547
HapII CCGG 1 cut(s) 1218
HgaI GACGC 2 cut(s) 1480, 1755
HhaI GCGC 5 cut(s) 74, 108, 128, 130, 950
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 6 cut(s) 524, 665, 824, 1070, 1309, 1794
Hin6I GCGC 5 cut(s) 72, 106, 126, 128, 948
HinP1I GCGC 5 cut(s) 72, 106, 126, 128, 948
HincII GTYRAC 2 cut(s) 1416, 1507
HindII GTYRAC 2 cut(s) 1416, 1507
HinfI GANTC 7 cut(s) 478, 936, 1027, 1192, 1232, 1625, 1697
HpaI GTTAAC 1 cut(s) 1507
HpaII CCGG 1 cut(s) 1218
HphI GGTGA 5 cut(s) 784, 908, 931, 1082, 1214
Hpy166II GTNNAC 6 cut(s) 138, 162, 1139, 1267, 1416, 1507
Hpy188I TCNGA 7 cut(s) 212, 292, 477, 537, 750, 1077, 1722
Hpy188III TCNNGA 4 cut(s) 409, 1287, 1568, 1755
Hpy8I GTNNAC 6 cut(s) 138, 162, 1139, 1267, 1416, 1507
HpyAV CCTTC 5 cut(s) 109, 418, 639, 1284, 1743
HpyCH4III ACNGT 3 cut(s) 1094, 1316, 1390
HpyCH4IV ACGT 5 cut(s) 134, 275, 733, 1141, 1421
HpyF3I CTNAG 3 cut(s) 780, 1554, 1566
HpySE526I ACGT 5 cut(s) 134, 275, 733, 1141, 1421
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 6 cut(s) 524, 665, 824, 1070, 1309, 1794
HspAI GCGC 5 cut(s) 72, 106, 126, 128, 948
KasI GGCGCC 1 cut(s) 71
KspAI GTTAAC 1 cut(s) 1507
Kzo9I GATC 7 cut(s) 25, 151, 517, 728, 745, 1072, 1204
LmnI GCTCC 7 cut(s) 239, 247, 259, 427, 435, 1340, 1757
LweI GCATC 4 cut(s) 235, 606, 790, 1702
MaeI CTAG 1 cut(s) 650
MaeII ACGT 5 cut(s) 134, 275, 733, 1141, 1421
MaeIII GTNAC 5 cut(s) 232, 857, 988, 1275, 1492
MalI GATC 7 cut(s) 27, 153, 519, 730, 747, 1074, 1206
MboI GATC 7 cut(s) 25, 151, 517, 728, 745, 1072, 1204
MflI RGATCY 2 cut(s) 151, 745
MhlI GDGCHC 5 cut(s) 164, 244, 264, 432, 907
Mly113I GGCGCC 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 1440
MseI TTAA 7 cut(s) 393, 525, 558, 738, 1254, 1506, 1776
MslI CAYNNNNRTG 1 cut(s) 1329
MspA1I CMGCKG 2 cut(s) 247, 1706
MspI CCGG 1 cut(s) 1218
MspR9I CCNGG 2 cut(s) 1219, 1611
Mva1269I GAATGC 2 cut(s) 919, 1690
MvaI CCWGG 1 cut(s) 1611
MvnI CGCG 2 cut(s) 128, 1766
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 1 cut(s) 1219
NdeII GATC 7 cut(s) 25, 151, 517, 728, 745, 1072, 1204
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 6 cut(s) 524, 665, 824, 1070, 1309, 1794
NlaIV GGNNCC 7 cut(s) 73, 747, 906, 1216, 1336, 1443, 1521
NmuCI GTSAC 2 cut(s) 857, 1492
PauI GCGCGC 1 cut(s) 126
PctI GAATGC 2 cut(s) 919, 1690
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 7 cut(s) 478, 936, 1027, 1192, 1232, 1625, 1697
PflFI GACNNNGTC 1 cut(s) 1586
PflMI CCANNNNNTGG 2 cut(s) 63, 420
PluTI GGCGCC 1 cut(s) 75
Ppu21I YACGTR 1 cut(s) 734
PpuMI RGGWCCY 1 cut(s) 502
PsiI TTATAA 1 cut(s) 1152
Psp124BI GAGCTC 3 cut(s) 244, 264, 432
Psp1406I AACGTT 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 1609
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 1609
PspN4I GGNNCC 7 cut(s) 73, 747, 906, 1216, 1336, 1443, 1521
PspPI GGNCC 3 cut(s) 54, 502, 1319
PspPPI RGGWCCY 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 1628
PsuI RGATCY 2 cut(s) 151, 745
PsyI GACNNNGTC 1 cut(s) 1586
PteI GCGCGC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 1706
RsaI GTAC 2 cut(s) 1050, 1615
RsaNI GTAC 2 cut(s) 1049, 1614
RseI CAYNNNNRTG 1 cut(s) 1329
SacI GAGCTC 3 cut(s) 244, 264, 432
SaqAI TTAA 7 cut(s) 393, 525, 558, 738, 1254, 1506, 1776
Sau3AI GATC 7 cut(s) 25, 151, 517, 728, 745, 1072, 1204
Sau96I GGNCC 3 cut(s) 54, 502, 1319
ScrFI CCNGG 2 cut(s) 1219, 1611
SduI GDGCHC 5 cut(s) 164, 244, 264, 432, 907
SfaNI GCATC 4 cut(s) 235, 606, 790, 1702
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 1329
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 650
SstI GAGCTC 3 cut(s) 244, 264, 432
StyD4I CCNGG 2 cut(s) 1217, 1609
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 3 cut(s) 1094, 1316, 1390
TaiI ACGT 5 cut(s) 137, 278, 736, 1144, 1424
TaqI TCGA 5 cut(s) 28, 516, 956, 1690, 1736
TaqII GACCGA 1 cut(s) 1476
TatI WGTACW 1 cut(s) 1048
TauI GCSGC 4 cut(s) 72, 839, 842, 1324
TfiI GAWTC 7 cut(s) 478, 936, 1027, 1192, 1232, 1625, 1697
Tru1I TTAA 7 cut(s) 393, 525, 558, 738, 1254, 1506, 1776
Tru9I TTAA 7 cut(s) 393, 525, 558, 738, 1254, 1506, 1776
TseFI GTSAC 2 cut(s) 857, 1492
Tsp45I GTSAC 2 cut(s) 857, 1492
TspGWI ACGGA 2 cut(s) 62, 1532
Tth111I GACNNNGTC 1 cut(s) 1586
Van91I CCANNNNNTGG 2 cut(s) 63, 420
VneI GTGCAC 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 4 cut(s) 286, 335, 1183, 1771
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.