MD15G1307700.v1.1

Peptidyl-prolyl cis-trans isomerase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
30716881 .. 30721816
4936 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1307700.v1.1.491

Sequence Viewer

Length: 1785 bp
ATGGGAAAGAAGCAGCACAGCAAAGATCGAATGTTCATCACCAAAACGGAGTGGGCCACCGAATGGGGCGGCGCCAAAGCCCAGCCCACCTCCACTCCTTTCAAGCGCCTCCCCTTCTATTGCTGCGCGCTTACGTTTACGCCATTTGAAGACCCAGTGTGCACCGCAGACGGCAGCGTTTTTGATATACTGAATATAATTCCATATATCAGAAAGTATGGGAAGCATCCTGTTACCGGAGCTCCGCTGAAGCAGGAGAATCTCATACCGCTAACGTTCCACAAGAATTCTGATGGAGAGTTTCAGTGCCCTGTTTTGAACAAAGTTTTCACTGAATTTACACACATAGTTGCTGTGAAGACAACAGGAAATGTCTTCTCCTATGAGGCAGTTAAAGAACTAAACATCAAGACCAAGAATTGGAAGGAGCTCCTCACAGATGAACCATTTTCTAAGGAAGACCTGATAACCATTCAGAATCCCAATGCACTTGACAGCAAGGTTCTAGTGGAGTTCGATCATGTTAAAAATAGTCTGAAAATTGATGATGAAGATTTTAAGAGAATGAGTGCAGACCCCACCTTTAACATTAATGTAAATGGAGATATCAAGCAGATGCTCAAAGAGCTTGGAACTGAAAAAGGAAGGCTAGCTGCACTGCATGGAGGAGGTGGCAGCAAGGCACAAAATGAACGGGCTGCTGCACTTGAAGCCATTTTAGCTGCAAGAACGCGTATTAAAGAGGATCCGAAATCAAAATCAAATGGGGAGGTGAAAGCTCAGGCATATAGTATTGTGGATGCTGCTTCTGCTTCTGTGCATGGAAGAAGTGCTGCTGCCGCCAGAGCCACATCAAGTGACAAAACTGCTGCTCGAATTGCTATGCACAAGGCTGGTGAGAGGGCACCAGTGAATGCAAAGATGGTAAAGAGCAGATTCACCACGGGTGCTGCTTCCAGATCTTTCACTTCTACCGCCTTTACTCCTGTTACTGAAAATGAATTTGAATATGTCAAAGTTGAGAAGAATCCAAAAAAGAAAGGATATGTACAACTACACACAACACATGGTGATTTGAACATTGAGCTACACTGTGATATTGCCCCCAGAGCTTGCGAGAACTTCATCACTCTTTGTGAACGTGGCTATTATAACGGAGTAGGTTTTCATAGAAGCATTAGGAATTTTATGATTCAAGGTGGTGATCCTACTGGTACTGGGACAGGAGGGGAATCTATATGGGGAAAGCCTTTTAATGATGAAGTGAACTCCAAGTTACTGCACTCTGGAAGGGGTGTTGTTAGTATGGCTAACAGTGGGCCACACACTAATGGCTCCCAATTTTTCATCCTTTACAAATCTGCAAATCATTTGAACTACAAGCATACGGTTTTCGGTGGAGTTGTCGGTGGCTTGACCACATTGGCAGTAATGGAAAAGGTTCCTGTTGATGATAATGACCGACCTTTGGAGGAAATTAAGATAACAAGTGTCACAATTTTTGTCAATCCTTACACAGAGCCTGATGAAGAAGAAGAAAAGGCCAAAGCTGAAGAGAAAGCTCAGGATGAAGATAATGACAAGGTTGGGTCATGGTTTAGCAATCCTGGTACGGGAGTGGAATCTGGCCTTGGTGGTGGTGGTGGTGTTGGGAAGTATTTGAAAGCAAGGAGTGCTCTACCTGAACCGGCTGCTGTTGGTGCTGGTCTGACAGAGCTTCCTTCAACAAAGAAAAGAAAATCAGGAGTTTCCGCGTCCAATTTTAATGATTTTTCTTCATGGTAG

Protein Analysis

595

Amino Acids

64.8

Weight (kDa)

8.24

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rtf2 PF04641 94 - 167 2.3e-06 Rtf2 RING-finger
Pro_isomerase PF00160 349 - 499 4.3e-52 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67530
fragaria_vesca FvH4_1g17680
malus_domestica MD02G1185800.v1.1 MD15G1307700.v1.1
prunus_persica Prupe.6G220900_v2.0.a1
pyrus_communis pycom02g15080 pycom15g26020
rosa_chinensis RchiOBHm_Chr2g0108011
rosa_laevigata RLG00000017633
rosa_multiflora Rmu_sc0001484.1_g000022
rosa_roxburghii Rroxscaffold_2G00135730
rosa_rugosa Rorug02G0149700
rosa_samantha Rh2AG198700 Rh2BG211600 Rh2CG203300
rosa_wichuraiana Rw2G015770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1152
AccB1I GGYRCC 2 cut(s) 71, 904
AccB7I CCANNNNNTGG 2 cut(s) 63, 420
AccII CGCG 3 cut(s) 128, 733, 1754
AciI CCGC 7 cut(s) 69, 165, 245, 269, 840, 975, 1752
AclI AACGTT 1 cut(s) 275
AclWI GGATC 3 cut(s) 740, 753, 1199
AcsI RAATTY 4 cut(s) 286, 335, 1001, 1183
AcuI CTGAAG 2 cut(s) 269, 1572
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 1070
AfaI GTAC 3 cut(s) 1050, 1216, 1612
AfiI CCNNNNNNNGG 5 cut(s) 63, 236, 420, 1468, 1613
AflIII ACRYGT 1 cut(s) 731
AjnI CCWGG 1 cut(s) 1606
AjuI GAANNNNNNNTTGG 2 cut(s) 1614, 1646
Alw21I GWGCWC 4 cut(s) 164, 244, 432, 1678
Alw44I GTGCAC 1 cut(s) 160
AlwI GGATC 3 cut(s) 740, 753, 1199
AlwNI CAGNNNCTG 1 cut(s) 1523
AoxI GGCC 4 cut(s) 54, 1319, 1542, 1627
ApaLI GTGCAC 1 cut(s) 160
ApoI RAATTY 4 cut(s) 286, 335, 1001, 1183
AseI ATTAAT 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 1440
AspLEI GCGC 4 cut(s) 74, 108, 128, 130
AspS9I GGNCC 2 cut(s) 54, 1319
AsuHPI GGTGA 6 cut(s) 31, 784, 908, 931, 1082, 1214
AsuNHI GCTAGC 1 cut(s) 649
BaeGI GKGCMC 3 cut(s) 164, 311, 907
BaeI ACNNNNGTAYC 2 cut(s) 1602, 1635
BamHI GGATCC 1 cut(s) 745
BanI GGYRCC 2 cut(s) 71, 904
BanII GRGCYC 2 cut(s) 244, 432
BbsI GAAGAC 4 cut(s) 156, 365, 367, 465
Bbv12I GWGCWC 4 cut(s) 164, 244, 432, 1678
BccI CCATC 2 cut(s) 287, 916
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 1608
BfaI CTAG 2 cut(s) 506, 650
BfoI RGCGCY 2 cut(s) 75, 109
BglII AGATCT 1 cut(s) 959
Bme1390I CCNGG 1 cut(s) 1608
BmgT120I GGNCC 2 cut(s) 54, 1319
BmiI GGNNCC 5 cut(s) 73, 747, 906, 1336, 1443
BmrFI CCNGG 1 cut(s) 1608
BmrI ACTGGG 2 cut(s) 149, 1227
BmsI GCATC 3 cut(s) 235, 606, 790
BmtI GCTAGC 1 cut(s) 653
BmuI ACTGGG 2 cut(s) 149, 1227
BpiI GAAGAC 4 cut(s) 156, 365, 367, 465
Bpu10I CCTNAGC 2 cut(s) 780, 1563
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 942, 1630
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 226, 256
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 236, 420, 1468, 1613
Bse118I RCCGGY 1 cut(s) 1687
Bse1I ACTGG 4 cut(s) 155, 908, 1216, 1222
BseBI CCWGG 1 cut(s) 1608
BseDI CCNNGG 2 cut(s) 942, 1630
BseGI GGATG 4 cut(s) 226, 805, 1347, 1573
BseLI CCNNNNNNNGG 5 cut(s) 63, 236, 420, 1468, 1613
BseMII CTCAG 2 cut(s) 794, 1577
BseNI ACTGG 4 cut(s) 155, 908, 1216, 1222
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 422, 681
BseSI GKGCMC 3 cut(s) 164, 311, 907
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 4 cut(s) 591, 639, 687, 1265
Bsh1236I CGCG 3 cut(s) 128, 733, 1754
BshFI GGCC 4 cut(s) 56, 1321, 1544, 1629
BshNI GGYRCC 2 cut(s) 71, 904
BsiHKAI GWGCWC 4 cut(s) 164, 244, 432, 1678
BsiSI CCGG 2 cut(s) 237, 1688
BslFI GGGAC 1 cut(s) 1234
BslI CCNNNNNNNGG 5 cut(s) 63, 236, 420, 1468, 1613
BsmFI GGGAC 1 cut(s) 1234
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 4 cut(s) 56, 1321, 1544, 1629
Bsp1286I GDGCHC 6 cut(s) 164, 244, 311, 432, 907, 1678
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 5 cut(s) 25, 517, 745, 959, 1204
BspACI CCGC 7 cut(s) 69, 165, 245, 269, 840, 975, 1752
BspANI GGCC 4 cut(s) 56, 1321, 1544, 1629
BspCNI CTCAG 2 cut(s) 793, 1576
BspFNI CGCG 3 cut(s) 128, 733, 1754
BspLI GGNNCC 5 cut(s) 73, 747, 906, 1336, 1443
BspOI GCTAGC 1 cut(s) 653
BspPI GGATC 3 cut(s) 740, 753, 1199
BspT107I GGYRCC 2 cut(s) 71, 904
BsrFI RCCGGY 1 cut(s) 1687
BsrGI TGTACA 1 cut(s) 1048
BsrI ACTGG 4 cut(s) 155, 908, 1216, 1222
BssAI RCCGGY 1 cut(s) 1687
BssECI CCNNGG 2 cut(s) 942, 1630
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 5 cut(s) 25, 517, 745, 959, 1204
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 1630
Bst2UI CCWGG 1 cut(s) 1608
Bst4CI ACNGT 3 cut(s) 1094, 1316, 1390
Bst6I CTCTTC 1 cut(s) 1548
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 1673
BstAUI TGTACA 1 cut(s) 1048
BstC8I GCNNGC 3 cut(s) 128, 651, 1114
BstDEI CTNAG 3 cut(s) 453, 780, 1563
BstDSI CCRYGG 1 cut(s) 942
BstF5I GGATG 4 cut(s) 226, 805, 1347, 1573
BstFNI CGCG 3 cut(s) 128, 733, 1754
BstH2I RGCGCY 2 cut(s) 75, 109
BstHHI GCGC 4 cut(s) 74, 108, 128, 130
BstKTI GATC 5 cut(s) 28, 520, 748, 962, 1207
BstMBI GATC 5 cut(s) 25, 517, 745, 959, 1204
BstNI CCWGG 1 cut(s) 1608
BstSCI CCNGG 1 cut(s) 1606
BstSLI GKGCMC 3 cut(s) 164, 311, 907
BstUI CGCG 3 cut(s) 128, 733, 1754
BstV2I GAAGAC 4 cut(s) 156, 365, 367, 465
BstX2I RGATCY 2 cut(s) 745, 959
BstYI RGATCY 2 cut(s) 745, 959
BsuRI GGCC 4 cut(s) 56, 1321, 1544, 1629
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 4 cut(s) 226, 805, 1347, 1573
BtsI GCAGTG 1 cut(s) 656
BtsIMutI CAGTG 7 cut(s) 162, 311, 330, 656, 915, 1090, 1321
Cac8I GCNNGC 3 cut(s) 128, 651, 1114
CaiI CAGNNNCTG 1 cut(s) 1523
CfoI GCGC 4 cut(s) 74, 108, 128, 130
Cfr10I RCCGGY 1 cut(s) 1687
Cfr13I GGNCC 2 cut(s) 54, 1319
CseI GACGC 1 cut(s) 1743
Csp6I GTAC 3 cut(s) 1049, 1215, 1611
CviAII CATG 6 cut(s) 521, 662, 821, 1067, 1593, 1779
CviQI GTAC 3 cut(s) 1049, 1215, 1611
DdeI CTNAG 3 cut(s) 453, 780, 1563
DinI GGCGCC 1 cut(s) 73
DpnI GATC 5 cut(s) 27, 519, 747, 961, 1206
DpnII GATC 5 cut(s) 25, 517, 745, 959, 1204
DraIII CACNNNGTG 1 cut(s) 1070
Eam1104I CTCTTC 1 cut(s) 1548
EarI CTCTTC 1 cut(s) 1548
Ecl136II GAGCTC 2 cut(s) 242, 430
Eco130I CCWWGG 1 cut(s) 1630
Eco24I GRGCYC 2 cut(s) 244, 432
Eco32I GATATC 1 cut(s) 607
Eco53kI GAGCTC 2 cut(s) 242, 430
Eco57I CTGAAG 2 cut(s) 269, 1572
EcoICRI GAGCTC 2 cut(s) 242, 430
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 1606
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 1630
EcoT38I GRGCYC 2 cut(s) 244, 432
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 1630
FaeI CATG 6 cut(s) 524, 665, 824, 1070, 1596, 1782
FaqI GGGAC 1 cut(s) 1234
FatI CATG 6 cut(s) 520, 661, 820, 1066, 1592, 1778
FokI GGATG 4 cut(s) 213, 812, 1334, 1580
FriOI GRGCYC 2 cut(s) 244, 432
FspBI CTAG 2 cut(s) 506, 650
GlaI GCGC 4 cut(s) 73, 107, 127, 129
GsaI CCCAGC 1 cut(s) 85
HaeII RGCGCY 2 cut(s) 75, 109
HaeIII GGCC 4 cut(s) 56, 1321, 1544, 1629
HapII CCGG 2 cut(s) 237, 1688
HgaI GACGC 1 cut(s) 1743
HhaI GCGC 4 cut(s) 74, 108, 128, 130
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 6 cut(s) 524, 665, 824, 1070, 1596, 1782
Hin6I GCGC 4 cut(s) 72, 106, 126, 128
HinP1I GCGC 4 cut(s) 72, 106, 126, 128
HinfI GANTC 7 cut(s) 259, 478, 936, 1027, 1192, 1232, 1622
HpaII CCGG 2 cut(s) 237, 1688
HphI GGTGA 6 cut(s) 31, 784, 908, 931, 1082, 1214
Hpy166II GTNNAC 4 cut(s) 138, 162, 1139, 1267
Hpy188I TCNGA 6 cut(s) 212, 292, 477, 537, 750, 1710
Hpy188III TCNNGA 5 cut(s) 409, 957, 1287, 1565, 1743
Hpy8I GTNNAC 4 cut(s) 138, 162, 1139, 1267
HpyAV CCTTC 5 cut(s) 124, 418, 639, 1284, 1731
HpyCH4III ACNGT 3 cut(s) 1094, 1316, 1390
HpyCH4IV ACGT 3 cut(s) 134, 275, 1141
HpyF3I CTNAG 3 cut(s) 453, 780, 1563
HpySE526I ACGT 3 cut(s) 134, 275, 1141
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 6 cut(s) 524, 665, 824, 1070, 1596, 1782
HspAI GCGC 4 cut(s) 72, 106, 126, 128
KasI GGCGCC 1 cut(s) 71
Kzo9I GATC 5 cut(s) 25, 517, 745, 959, 1204
LmnI GCTCC 5 cut(s) 239, 247, 427, 435, 1340
LweI GCATC 3 cut(s) 235, 606, 790
MaeI CTAG 2 cut(s) 506, 650
MaeII ACGT 3 cut(s) 134, 275, 1141
MaeIII GTNAC 5 cut(s) 232, 857, 988, 1275, 1492
MalI GATC 5 cut(s) 27, 519, 747, 961, 1206
MboI GATC 5 cut(s) 25, 517, 745, 959, 1204
MflI RGATCY 2 cut(s) 745, 959
MhlI GDGCHC 6 cut(s) 164, 244, 311, 432, 907, 1678
MluI ACGCGT 1 cut(s) 731
Mly113I GGCGCC 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 1440
MseI TTAA 9 cut(s) 393, 525, 558, 585, 591, 738, 1254, 1479, 1764
MslI CAYNNNNRTG 1 cut(s) 1329
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 2 cut(s) 237, 1688
MspR9I CCNGG 1 cut(s) 1608
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 1608
MvnI CGCG 3 cut(s) 128, 733, 1754
NarI GGCGCC 1 cut(s) 72
NdeII GATC 5 cut(s) 25, 517, 745, 959, 1204
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 6 cut(s) 524, 665, 824, 1070, 1596, 1782
NlaIV GGNNCC 5 cut(s) 73, 747, 906, 1336, 1443
NmuCI GTSAC 2 cut(s) 857, 1492
PauI GCGCGC 1 cut(s) 126
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 7 cut(s) 259, 478, 936, 1027, 1192, 1232, 1622
PflMI CCANNNNNTGG 2 cut(s) 63, 420
PluTI GGCGCC 1 cut(s) 75
PshBI ATTAAT 1 cut(s) 591
PsiI TTATAA 1 cut(s) 1152
Psp124BI GAGCTC 2 cut(s) 244, 432
Psp1406I AACGTT 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 1606
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 1606
PspN4I GGNNCC 5 cut(s) 73, 747, 906, 1336, 1443
PspPI GGNCC 2 cut(s) 54, 1319
PstNI CAGNNNCTG 1 cut(s) 1523
PsuI RGATCY 2 cut(s) 745, 959
PteI GCGCGC 1 cut(s) 126
RsaI GTAC 3 cut(s) 1050, 1216, 1612
RsaNI GTAC 3 cut(s) 1049, 1215, 1611
RseI CAYNNNNRTG 1 cut(s) 1329
SacI GAGCTC 2 cut(s) 244, 432
SaqAI TTAA 9 cut(s) 393, 525, 558, 585, 591, 738, 1254, 1479, 1764
Sau3AI GATC 5 cut(s) 25, 517, 745, 959, 1204
Sau96I GGNCC 2 cut(s) 54, 1319
ScrFI CCNGG 1 cut(s) 1608
SduI GDGCHC 6 cut(s) 164, 244, 311, 432, 907, 1678
SfaNI GCATC 3 cut(s) 235, 606, 790
SfoI GGCGCC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 1329
SsiI CCGC 7 cut(s) 69, 165, 245, 269, 840, 975, 1752
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 2 cut(s) 506, 650
SstI GAGCTC 2 cut(s) 244, 432
StyD4I CCNGG 1 cut(s) 1606
StyI CCWWGG 1 cut(s) 1630
TaaI ACNGT 3 cut(s) 1094, 1316, 1390
TaiI ACGT 3 cut(s) 137, 278, 1144
TaqI TCGA 3 cut(s) 28, 516, 874
TaqII GACCGA 1 cut(s) 1476
TatI WGTACW 1 cut(s) 1048
TauI GCSGC 2 cut(s) 72, 842
TfiI GAWTC 7 cut(s) 259, 478, 936, 1027, 1192, 1232, 1622
Tru1I TTAA 9 cut(s) 393, 525, 558, 585, 591, 738, 1254, 1479, 1764
Tru9I TTAA 9 cut(s) 393, 525, 558, 585, 591, 738, 1254, 1479, 1764
TscAI CASTG 7 cut(s) 162, 311, 337, 663, 915, 1097, 1321
TseFI GTSAC 2 cut(s) 857, 1492
Tsp45I GTSAC 2 cut(s) 857, 1492
TspGWI ACGGA 2 cut(s) 62, 1170
TspRI CASTG 7 cut(s) 162, 311, 337, 663, 915, 1097, 1321
Van91I CCANNNNNTGG 2 cut(s) 63, 420
VneI GTGCAC 1 cut(s) 160
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 4 cut(s) 286, 335, 1001, 1183
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 2 cut(s) 506, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.