Rroxscaffold_2G00135730

Peptidyl-prolyl cis-trans isomerase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015177
Physical Location & Seq
Reverse (-)
73282919 .. 73286942
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135730.1

Sequence Viewer

Length: 1497 bp
ATGGGGAAGAAACAGCACAGCAAGGACCGAATGTACCTCACCAAAACGGAGTGGGCCACCGAATGGGGCGGCGCCAAAGCCAAGTCCACCACTCCCTTCAAACGCCTCCCCTTCTATTGCTGCTCACTGACGTTTGTGCCGTTTGAGGACCCAGTTTGCACCGCAGACGGAAGCGTTTTTGAAATATTGAGTATAGTTCCTTATATCCGGAAGTTTGGGAAGCATCCGGTGACCGGAGCTCCGTTGAAGCAGGAGGACCTCATTCCACTAACGTTCCACAAGAACAGCGATGGAGAGTTTCAGTGCCCTGTTTTAAACAAAGTCTTCACTGAATATACCCACATAGTTGCTGTGAAGACAACAGGAAATGTCTTTTGCTATGAGGCAATTAAAGAACTGAACATCAAGACCAAGAACTGGAAGGAACTCCTCACAGATGAACCATTTTCTAAGGAAGACCTGATAACCATTCAGAATCCGAATGCACTTGACAGCAAGGTTCTTGTGGAATTTGACCATGTTAAAAATGGTTTGAAAATTGATGATGAAGAGTTGGACCGAATGACTTCTGATCCAACCTATAACATAAATATAACTGGAGATATCAAGCAGATGCTCAAAGAGCTTGGAACTGAGAAAGGAAAGCAAACTGCATTGCATGGAGGTGGTGGCTCAAAGGCCCAAAATGAACGGGCTGCTGCACTTGAAGCCATTTTAACTGCAAGGTCTCGTATTATAGAGGATCCAAAGTCAAAGTCAAATGGGGAGTCACCTCAGGCATACAGTATTGTAGATGCTGCTTCTGCTTCAGTACATGGAAGAAGTGCTGCTGCTGCAAGAGCCACATCTAGTGATAAAACTGCTGCTCGAATAGCTATGCACAAGGCTGGTGAAAGGGCACCAGTGAATGCAAAGATGGTAAAGAGCAAATACACCACTGGTGCTGCTTCGAGATCCTTCACTTCTACTGCCTTTGATCCTGTCACTGAAAATGAATTCGAGTATGTCAAAGTTGAGAAGAATCCAAAAAAGAAAGGATATGTACAGCTTCATACAACACATGGTGATTTGAACATCGAGCTACATTGTGATATAACCCCCAGGGCTTGTGAGAACTTCATCACACTCTGTGATCGTGGCTATTATAATGGAGTAGCTTTTCATAGAAGCATTAGGAATTTTATGATCCAAGGTGGTGATCCTACTGGTACTGGGAAAGGAGGTGAATCTATATGGGGAAAGCCTTTTAATGATGAATTGAACTCCAAGTTAGTTCACTCTGGAAGGGGTGTTGTTAGTATGGCTAACAGTGGGCCTCACACTAATGGTTCCCAGTTTTTTATCCTTTACAAATCTGCAAATCATTTGAACTTTAAGCACACAGTTTTTGGTGGAGTAGTTGGTGGCCTGACCACACTGGCAGCAATGGAGAAGGTCCCTGTTGATGATGATGACCGACCTTTGGTATGTTTATTATGTTATGTATTTCAGTTCTAG

Protein Analysis

498

Amino Acids

54.89

Weight (kDa)

8.35

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 347 - 488 4.1e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67530
fragaria_vesca FvH4_1g17680
malus_domestica MD02G1185800.v1.1 MD15G1307700.v1.1
prunus_persica Prupe.6G220900_v2.0.a1
pyrus_communis pycom02g15080 pycom15g26020
rosa_chinensis RchiOBHm_Chr2g0108011
rosa_laevigata RLG00000017633
rosa_multiflora Rmu_sc0001484.1_g000022
rosa_roxburghii Rroxscaffold_2G00135730
rosa_rugosa Rorug02G0149700
rosa_samantha Rh2AG198700 Rh2BG211600 Rh2CG203300
rosa_wichuraiana Rw2G015770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1146
AccB1I GGYRCC 2 cut(s) 71, 898
AccB7I CCANNNNNTGG 2 cut(s) 63, 417
AccIII TCCGGA 1 cut(s) 207
AciI CCGC 2 cut(s) 69, 162
AclI AACGTT 1 cut(s) 272
AclWI GGATC 7 cut(s) 566, 737, 750, 948, 971, 1180, 1193
AcsI RAATTY 3 cut(s) 509, 995, 1177
AcuI CTGAAG 1 cut(s) 792
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 2 cut(s) 1064, 1130
AfaI GTAC 4 cut(s) 35, 813, 1044, 1210
AfiI CCNNNNNNNGG 4 cut(s) 63, 233, 417, 1462
AgsI TTSAA 8 cut(s) 100, 182, 247, 535, 707, 1072, 1261, 1369
AjnI CCWGG 1 cut(s) 1100
AluBI AGCT 6 cut(s) 239, 625, 875, 1048, 1081, 1157
AluI AGCT 6 cut(s) 239, 625, 875, 1048, 1081, 1157
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 732
AlwI GGATC 7 cut(s) 566, 737, 750, 948, 971, 1180, 1193
Aor13HI TCCGGA 1 cut(s) 207
AoxI GGCC 4 cut(s) 54, 678, 1313, 1405
ApoI RAATTY 3 cut(s) 509, 995, 1177
ArsI GACNNNNNNTTYG 4 cut(s) 740, 752, 772, 784
Asp700I GAANNNNTTC 1 cut(s) 565
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 8 cut(s) 25, 54, 148, 256, 556, 679, 1313, 1435
AsuHPI GGTGA 7 cut(s) 31, 241, 762, 902, 1076, 1208, 1235
AvaII GGWCC 5 cut(s) 25, 148, 256, 556, 1435
AxyI CCTNAGG 1 cut(s) 774
BaeGI GKGCMC 2 cut(s) 308, 901
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 2 cut(s) 71, 898
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 3 cut(s) 316, 362, 462
Bbv12I GWGCWC 1 cut(s) 241
BccI CCATC 2 cut(s) 284, 910
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 1102
BcoDI GTCTC 1 cut(s) 732
BfaI CTAG 2 cut(s) 849, 1495
BfoI RGCGCY 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 1102
Bme18I GGWCC 5 cut(s) 25, 148, 256, 556, 1435
BmgT120I GGNCC 8 cut(s) 25, 54, 148, 256, 556, 679, 1313, 1435
BmiI GGNNCC 6 cut(s) 73, 150, 744, 900, 1330, 1437
BmrFI CCNGG 1 cut(s) 1102
BmrI ACTGGG 3 cut(s) 146, 1221, 1327
BmsI GCATC 3 cut(s) 232, 603, 784
BmuI ACTGGG 3 cut(s) 146, 1221, 1327
BpiI GAAGAC 3 cut(s) 316, 362, 462
BpmI CTGGAG 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 732
BsaJI CCNNGG 3 cut(s) 1100, 1101, 1189
BsaWI WCCGGW 3 cut(s) 207, 226, 233
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 233, 417, 1462
Bse1I ACTGG 9 cut(s) 152, 422, 601, 902, 943, 1210, 1216, 1333, 1422
Bse21I CCTNAGG 1 cut(s) 774
Bse3DI GCAATG 2 cut(s) 653, 1431
BseAI TCCGGA 1 cut(s) 207
BseBI CCWGG 1 cut(s) 1102
BseDI CCNNGG 3 cut(s) 1100, 1101, 1189
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 4 cut(s) 63, 233, 417, 1462
BseMI GCAATG 2 cut(s) 653, 1431
BseMII CTCAG 2 cut(s) 624, 788
BseNI ACTGG 9 cut(s) 152, 422, 601, 902, 943, 1210, 1216, 1333, 1422
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 2 cut(s) 308, 901
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 4 cut(s) 56, 680, 1315, 1407
BshNI GGYRCC 2 cut(s) 71, 898
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 3 cut(s) 208, 227, 234
BslFI GGGAC 1 cut(s) 1421
BslI CCNNNNNNNGG 4 cut(s) 63, 233, 417, 1462
BsmAI GTCTC 1 cut(s) 732
BsmFI GGGAC 1 cut(s) 1421
BsmI GAATGC 2 cut(s) 487, 913
BsnI GGCC 4 cut(s) 56, 680, 1315, 1407
Bso31I GGTCTC 1 cut(s) 732
Bsp1286I GDGCHC 3 cut(s) 241, 308, 901
Bsp13I TCCGGA 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 1042
Bsp143I GATC 7 cut(s) 571, 742, 953, 976, 1132, 1185, 1198
BspACI CCGC 2 cut(s) 69, 162
BspANI GGCC 4 cut(s) 56, 680, 1315, 1407
BspCNI CTCAG 2 cut(s) 625, 787
BspEI TCCGGA 1 cut(s) 207
BspLI GGNNCC 6 cut(s) 73, 150, 744, 900, 1330, 1437
BspPI GGATC 7 cut(s) 566, 737, 750, 948, 971, 1180, 1193
BspT107I GGYRCC 2 cut(s) 71, 898
BspTNI GGTCTC 1 cut(s) 732
BsrDI GCAATG 2 cut(s) 653, 1431
BsrGI TGTACA 1 cut(s) 1042
BsrI ACTGG 9 cut(s) 152, 422, 601, 902, 943, 1210, 1216, 1333, 1422
BssECI CCNNGG 3 cut(s) 1100, 1101, 1189
BssMI GATC 7 cut(s) 571, 742, 953, 976, 1132, 1185, 1198
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 1189
Bst2UI CCWGG 1 cut(s) 1102
Bst4CI ACNGT 3 cut(s) 785, 1310, 1384
Bst6I CTCTTC 1 cut(s) 543
BstACI GRCGYC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 1042
BstDEI CTNAG 3 cut(s) 450, 633, 774
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
BstMAI GTCTC 1 cut(s) 732
BstMBI GATC 7 cut(s) 571, 742, 953, 976, 1132, 1185, 1198
BstMWI GCNNNNNNNGC 6 cut(s) 622, 707, 803, 833, 839, 872
BstNI CCWGG 1 cut(s) 1102
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 1100
BstSLI GKGCMC 2 cut(s) 308, 901
BstV2I GAAGAC 3 cut(s) 316, 362, 462
BstX2I RGATCY 2 cut(s) 742, 953
BstYI RGATCY 2 cut(s) 742, 953
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 4 cut(s) 56, 680, 1315, 1407
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 8 cut(s) 125, 308, 327, 909, 936, 984, 1315, 1415
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 8 cut(s) 25, 54, 148, 256, 556, 679, 1313, 1435
Csp6I GTAC 4 cut(s) 34, 812, 1043, 1209
CviAII CATG 4 cut(s) 518, 659, 815, 1061
CviQI GTAC 4 cut(s) 34, 812, 1043, 1209
DdeI CTNAG 3 cut(s) 450, 633, 774
DinI GGCGCC 1 cut(s) 73
DpnI GATC 7 cut(s) 573, 744, 955, 978, 1134, 1187, 1200
DpnII GATC 7 cut(s) 571, 742, 953, 976, 1132, 1185, 1198
DraI TTTAAA 1 cut(s) 315
DraIII CACNNNGTG 2 cut(s) 1064, 1130
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Ecl136II GAGCTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 1189
Eco24I GRGCYC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 732
Eco32I GATATC 1 cut(s) 604
Eco47I GGWCC 5 cut(s) 25, 148, 256, 556, 1435
Eco53kI GAGCTC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 792
Eco81I CCTNAGG 1 cut(s) 774
Eco91I GGTNACC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 239
EcoO109I RGGNCCY 3 cut(s) 148, 256, 1435
EcoO65I GGTNACC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 1100
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 1189
EcoT38I GRGCYC 1 cut(s) 241
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 1189
FaeI CATG 4 cut(s) 521, 662, 818, 1064
FaqI GGGAC 1 cut(s) 1421
FatI CATG 4 cut(s) 517, 658, 814, 1060
FokI GGATG 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 241
FspBI CTAG 2 cut(s) 849, 1495
GlaI GCGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 4 cut(s) 56, 680, 1315, 1407
HapII CCGG 3 cut(s) 208, 227, 234
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 4 cut(s) 521, 662, 818, 1064
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 4 cut(s) 475, 767, 1021, 1226
HpaII CCGG 3 cut(s) 208, 227, 234
HphI GGTGA 7 cut(s) 31, 241, 762, 902, 1076, 1208, 1235
Hpy166II GTNNAC 2 cut(s) 87, 1276
Hpy188I TCNGA 3 cut(s) 474, 480, 571
Hpy188III TCNNGA 4 cut(s) 208, 406, 951, 1281
Hpy8I GTNNAC 2 cut(s) 87, 1276
HpyAV CCTTC 6 cut(s) 106, 121, 415, 967, 1278, 1426
HpyCH4III ACNGT 3 cut(s) 785, 1310, 1384
HpyCH4IV ACGT 2 cut(s) 131, 272
HpyF10VI GCNNNNNNNGC 6 cut(s) 622, 707, 803, 833, 839, 872
HpyF3I CTNAG 3 cut(s) 450, 633, 774
HpySE526I ACGT 2 cut(s) 131, 272
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 4 cut(s) 521, 662, 818, 1064
HspAI GCGC 1 cut(s) 72
KasI GGCGCC 1 cut(s) 71
Kpn2I TCCGGA 1 cut(s) 207
Kzo9I GATC 7 cut(s) 571, 742, 953, 976, 1132, 1185, 1198
LmnI GCTCC 2 cut(s) 236, 244
LweI GCATC 3 cut(s) 232, 603, 784
MaeI CTAG 2 cut(s) 849, 1495
MaeII ACGT 2 cut(s) 131, 272
MaeIII GTNAC 3 cut(s) 229, 768, 982
MalI GATC 7 cut(s) 573, 744, 955, 978, 1134, 1187, 1200
MboI GATC 7 cut(s) 571, 742, 953, 976, 1132, 1185, 1198
MboII GAAGA 7 cut(s) 19, 316, 367, 467, 560, 831, 1030
MflI RGATCY 2 cut(s) 742, 953
MhlI GDGCHC 3 cut(s) 241, 308, 901
MluCI AATT 6 cut(s) 387, 509, 537, 995, 1177, 1256
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 2 cut(s) 534, 599
MroI TCCGGA 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 565
MseI TTAA 6 cut(s) 314, 390, 522, 716, 1248, 1374
MslI CAYNNNNRTG 2 cut(s) 663, 1323
MspI CCGG 3 cut(s) 208, 227, 234
MspR9I CCNGG 1 cut(s) 1102
Mva1269I GAATGC 2 cut(s) 487, 913
MvaI CCWGG 1 cut(s) 1102
MwoI GCNNNNNNNGC 6 cut(s) 622, 707, 803, 833, 839, 872
NarI GGCGCC 1 cut(s) 72
NdeII GATC 7 cut(s) 571, 742, 953, 976, 1132, 1185, 1198
NlaIII CATG 4 cut(s) 521, 662, 818, 1064
NlaIV GGNNCC 6 cut(s) 73, 150, 744, 900, 1330, 1437
NmuCI GTSAC 3 cut(s) 229, 768, 982
PasI CCCWGGG 1 cut(s) 1101
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 2 cut(s) 487, 913
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 3 cut(s) 475, 1021, 1226
PflMI CCANNNNNTGG 2 cut(s) 63, 417
PleI GAGTC 1 cut(s) 775
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 775
PpuMI RGGWCCY 3 cut(s) 148, 256, 1435
PsiI TTATAA 1 cut(s) 1146
Psp124BI GAGCTC 1 cut(s) 241
Psp1406I AACGTT 1 cut(s) 272
Psp5II RGGWCCY 3 cut(s) 148, 256, 1435
Psp6I CCWGG 1 cut(s) 1100
PspEI GGTNACC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 1100
PspN4I GGNNCC 6 cut(s) 73, 150, 744, 900, 1330, 1437
PspPI GGNCC 8 cut(s) 25, 54, 148, 256, 556, 679, 1313, 1435
PspPPI RGGWCCY 3 cut(s) 148, 256, 1435
PsuI RGATCY 2 cut(s) 742, 953
RsaI GTAC 4 cut(s) 35, 813, 1044, 1210
RsaNI GTAC 4 cut(s) 34, 812, 1043, 1209
RseI CAYNNNNRTG 2 cut(s) 663, 1323
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 6 cut(s) 314, 390, 522, 716, 1248, 1374
Sau3AI GATC 7 cut(s) 571, 742, 953, 976, 1132, 1185, 1198
Sau96I GGNCC 8 cut(s) 25, 54, 148, 256, 556, 679, 1313, 1435
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 1 cut(s) 1102
SduI GDGCHC 3 cut(s) 241, 308, 901
SfaNI GCATC 3 cut(s) 232, 603, 784
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 5 cut(s) 25, 148, 256, 556, 1435
SmiMI CAYNNNNRTG 2 cut(s) 663, 1323
Sse9I AATT 6 cut(s) 387, 509, 537, 995, 1177, 1256
SsiI CCGC 2 cut(s) 69, 162
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 1 cut(s) 186
SspMI CTAG 2 cut(s) 849, 1495
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 1100
StyI CCWWGG 1 cut(s) 1189
TaaI ACNGT 3 cut(s) 785, 1310, 1384
TaiI ACGT 2 cut(s) 134, 275
TaqI TCGA 4 cut(s) 868, 950, 999, 1077
TaqII GACCGA 3 cut(s) 42, 573, 1470
TasI AATT 6 cut(s) 387, 509, 537, 995, 1177, 1256
TatI WGTACW 2 cut(s) 811, 1042
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 3 cut(s) 475, 1021, 1226
Tru1I TTAA 6 cut(s) 314, 390, 522, 716, 1248, 1374
Tru9I TTAA 6 cut(s) 314, 390, 522, 716, 1248, 1374
TscAI CASTG 8 cut(s) 132, 308, 334, 909, 943, 991, 1315, 1422
TseFI GTSAC 3 cut(s) 229, 768, 982
Tsp45I GTSAC 3 cut(s) 229, 768, 982
TspDTI ATGAA 8 cut(s) 453, 561, 702, 1008, 1040, 1108, 1151, 1269
TspGWI ACGGA 3 cut(s) 62, 183, 231
TspRI CASTG 8 cut(s) 132, 308, 334, 909, 943, 991, 1315, 1422
Van91I CCANNNNNTGG 2 cut(s) 63, 417
VpaK11BI GGWCC 5 cut(s) 25, 148, 256, 556, 1435
XapI RAATTY 3 cut(s) 509, 995, 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 565
XspI CTAG 2 cut(s) 849, 1495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.