Rh2BG211600

Peptidyl-prolyl cis-trans isomerase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
19868181 .. 19876224
8044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG211600.1

Sequence Viewer

Length: 1500 bp
ATGGGGAAGAAACAGCACAGCAAGGACCGAATGTACCTCACCAAAACGGAGTGGGCCACCGAATGGGGCGGCGCCAAAGCCAAGTCCACCTCCACTCCCTTCAAACGCCTCCCCTTCTATTGCTGCTCACTGACGTTTGTGCCGTTTGAGGACCCAGTTTGCACCGCAGACGGAAGCGTTTTTGAAATATTGAGTATAGTTCCTTATATCCGCAAGTTTGGGAAGCATCCGGTGACCGGAGCTCCGTTGAAGCAGGAGGACCTCATTCCACTAACGTTCCACAAGAACAGCGATGGAGAGTTTCAGTGCCCTGTTTTAAACAAAGTCTTCACTGAATATACCCACATAGTTGCTGTGAAGACAACAGGAAATGTCTTTTGCTATGAGGCAATTAAAGAACTGAACATCAAGACCAAGAACTGGAAAGAACTCCTCACAGATGAACCATTTTCTAGGGAAGACCTGATAACCATTCAGAATCCAAATGCACTTGACAGCAAGGTTCTTGTGGAATTTGACCATGTTAAAAATGGTTTGAAAATTGATGATGAAGAGTTGGACCGAATGACTTCTGATCCAACCTATAACATAAATATAACTGGAGATGTCAAGCAGATGCTCAAAGAGCTTGGAACTGAGAAAGGAAAGCAAACTGCATTGCATGGAGGTGGTGGCTCAAAGGCCCAAAATGAACGGGCTGCTGCACTTGAAGCCATTTTAGCTGCAAGGTCTCGTATTAAAGAGGATCCAAAATCAAAGTCAAATGGGGAGTCACCTCAGGCGTACAGTATTGTAGATGCTGCTTCTGCTTCAGTACATGGAAGAAGTGCTGCTGCTGCAAGAGCCACATCTAGTGATAAAACTGCTGCTCGAATAGCTATGCACAAGGCTGGTGAAAGGGCACCAGTGAATGCAAAGATGGTAAAGAGCAAATACACCACTGGTGCTGCTTCTAGATCCTTCACTTCTACTGCCTTTGATCCTGTCACGGAAAATGAATTCGAGTATGTCAAAGTTGAGAAGAATCCAAAAAAGAAAGGATATGTACAGCTTCATACAACACATGGTGATTTGAACATTGAGCTACACTGTGATATAACCCCCAGGGCTTGTGAGAACTTCATCACACTCTGTGATCGTGGCTATTATAATGGAGTAGCTTTTCATAGAAGCATTAGGAATTTTATGATCCAAGGTGGTGATCCCACTGGTACTGGGAAAGGAGGTGAATCTATATGGGGAAAGCCTTTTAATGATGAATTGAACTCCAAGTTAGTTCACTCTGGAAGGGGTGTTGTTAGTATGGCTAATAGTGGGCCTCACACTAATGGTTCCCAGTTTTTTATCCTTTACAAATCTGCAAATCATTTGAACTTTAAGCACACAGTTTTTGGTGGAGTAGTTGGTGGCCTGACCACACTGGCAGCAATGGAGAAGGTCCCTGTTGATGATGATGACCGACCTTTGGTATGTTTATTATGTTATTTATTTCAGTTCTAG

Protein Analysis

499

Amino Acids

54.99

Weight (kDa)

8.49

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 348 - 489 4.3e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67530
fragaria_vesca FvH4_1g17680
malus_domestica MD02G1185800.v1.1 MD15G1307700.v1.1
prunus_persica Prupe.6G220900_v2.0.a1
pyrus_communis pycom02g15080 pycom15g26020
rosa_chinensis RchiOBHm_Chr2g0108011
rosa_laevigata RLG00000017633
rosa_multiflora Rmu_sc0001484.1_g000022
rosa_roxburghii Rroxscaffold_2G00135730
rosa_rugosa Rorug02G0149700
rosa_samantha Rh2AG198700 Rh2BG211600 Rh2CG203300
rosa_wichuraiana Rw2G015770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1149
AccB1I GGYRCC 2 cut(s) 71, 901
AccB7I CCANNNNNTGG 2 cut(s) 63, 420
AciI CCGC 3 cut(s) 69, 165, 211
AclI AACGTT 1 cut(s) 275
AclWI GGATC 7 cut(s) 569, 740, 753, 951, 974, 1183, 1196
AcsI RAATTY 3 cut(s) 512, 998, 1180
AcuI CTGAAG 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 2 cut(s) 1067, 1133
AfaI GTAC 5 cut(s) 35, 785, 816, 1047, 1213
AfiI CCNNNNNNNGG 4 cut(s) 63, 236, 420, 1465
AgsI TTSAA 8 cut(s) 103, 185, 250, 538, 710, 1075, 1264, 1372
AjnI CCWGG 1 cut(s) 1103
AluBI AGCT 7 cut(s) 242, 628, 722, 878, 1051, 1084, 1160
AluI AGCT 7 cut(s) 242, 628, 722, 878, 1051, 1084, 1160
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 735
AlwI GGATC 7 cut(s) 569, 740, 753, 951, 974, 1183, 1196
AoxI GGCC 4 cut(s) 54, 681, 1316, 1408
ApoI RAATTY 3 cut(s) 512, 998, 1180
ArsI GACNNNNNNTTYG 4 cut(s) 743, 755, 775, 787
Asp700I GAANNNNTTC 1 cut(s) 568
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 8 cut(s) 25, 54, 151, 259, 559, 682, 1316, 1438
AsuHPI GGTGA 7 cut(s) 31, 244, 765, 905, 1079, 1211, 1238
AvaII GGWCC 5 cut(s) 25, 151, 259, 559, 1438
AxyI CCTNAGG 1 cut(s) 777
BaeGI GKGCMC 2 cut(s) 311, 904
BamHI GGATCC 1 cut(s) 745
BanI GGYRCC 2 cut(s) 71, 901
BanII GRGCYC 1 cut(s) 244
BbsI GAAGAC 3 cut(s) 319, 365, 465
Bbv12I GWGCWC 1 cut(s) 244
BccI CCATC 2 cut(s) 287, 913
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 1105
BcoDI GTCTC 1 cut(s) 735
BfaI CTAG 4 cut(s) 453, 852, 954, 1498
BfoI RGCGCY 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 1105
Bme18I GGWCC 5 cut(s) 25, 151, 259, 559, 1438
BmgT120I GGNCC 8 cut(s) 25, 54, 151, 259, 559, 682, 1316, 1438
BmiI GGNNCC 6 cut(s) 73, 153, 747, 903, 1333, 1440
BmrFI CCNGG 1 cut(s) 1105
BmrI ACTGGG 3 cut(s) 149, 1224, 1330
BmsI GCATC 3 cut(s) 235, 606, 787
BmuI ACTGGG 3 cut(s) 149, 1224, 1330
BpiI GAAGAC 3 cut(s) 319, 365, 465
BpmI CTGGAG 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 735
BsaJI CCNNGG 3 cut(s) 1103, 1104, 1192
BsaWI WCCGGW 2 cut(s) 229, 236
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 226, 256
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 236, 420, 1465
Bse1I ACTGG 9 cut(s) 155, 425, 604, 905, 946, 1213, 1219, 1336, 1425
Bse21I CCTNAGG 1 cut(s) 777
Bse3DI GCAATG 2 cut(s) 656, 1434
BseBI CCWGG 1 cut(s) 1105
BseDI CCNNGG 3 cut(s) 1103, 1104, 1192
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 4 cut(s) 63, 236, 420, 1465
BseMI GCAATG 2 cut(s) 656, 1434
BseMII CTCAG 2 cut(s) 627, 791
BseNI ACTGG 9 cut(s) 155, 425, 604, 905, 946, 1213, 1219, 1336, 1425
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 2 cut(s) 311, 904
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 4 cut(s) 56, 683, 1318, 1410
BshNI GGYRCC 2 cut(s) 71, 901
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 230, 237
BslFI GGGAC 1 cut(s) 1424
BslI CCNNNNNNNGG 4 cut(s) 63, 236, 420, 1465
BsmAI GTCTC 1 cut(s) 735
BsmFI GGGAC 1 cut(s) 1424
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 4 cut(s) 56, 683, 1318, 1410
Bso31I GGTCTC 1 cut(s) 735
Bsp1286I GDGCHC 3 cut(s) 244, 311, 904
Bsp1407I TGTACA 1 cut(s) 1045
Bsp143I GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
BspACI CCGC 3 cut(s) 69, 165, 211
BspANI GGCC 4 cut(s) 56, 683, 1318, 1410
BspCNI CTCAG 2 cut(s) 628, 790
BspLI GGNNCC 6 cut(s) 73, 153, 747, 903, 1333, 1440
BspPI GGATC 7 cut(s) 569, 740, 753, 951, 974, 1183, 1196
BspT107I GGYRCC 2 cut(s) 71, 901
BspTNI GGTCTC 1 cut(s) 735
BsrDI GCAATG 2 cut(s) 656, 1434
BsrGI TGTACA 1 cut(s) 1045
BsrI ACTGG 9 cut(s) 155, 425, 604, 905, 946, 1213, 1219, 1336, 1425
BssECI CCNNGG 3 cut(s) 1103, 1104, 1192
BssMI GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 1192
Bst2UI CCWGG 1 cut(s) 1105
Bst4CI ACNGT 3 cut(s) 788, 1091, 1387
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 1045
BstDEI CTNAG 2 cut(s) 636, 777
BstEII GGTNACC 1 cut(s) 232
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 7 cut(s) 577, 748, 959, 982, 1138, 1191, 1204
BstMAI GTCTC 1 cut(s) 735
BstMBI GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
BstMWI GCNNNNNNNGC 7 cut(s) 625, 710, 719, 806, 836, 842, 875
BstNI CCWGG 1 cut(s) 1105
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 1103
BstSLI GKGCMC 2 cut(s) 311, 904
BstV2I GAAGAC 3 cut(s) 319, 365, 465
BstX2I RGATCY 2 cut(s) 745, 956
BstYI RGATCY 2 cut(s) 745, 956
Bsu36I CCTNAGG 1 cut(s) 777
BsuRI GGCC 4 cut(s) 56, 683, 1318, 1410
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 8 cut(s) 128, 311, 330, 912, 939, 1087, 1206, 1418
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 8 cut(s) 25, 54, 151, 259, 559, 682, 1316, 1438
Csp6I GTAC 5 cut(s) 34, 784, 815, 1046, 1212
CviAII CATG 4 cut(s) 521, 662, 818, 1064
CviQI GTAC 5 cut(s) 34, 784, 815, 1046, 1212
DdeI CTNAG 2 cut(s) 636, 777
DinI GGCGCC 1 cut(s) 73
DpnI GATC 7 cut(s) 576, 747, 958, 981, 1137, 1190, 1203
DpnII GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
DraI TTTAAA 1 cut(s) 318
DraIII CACNNNGTG 2 cut(s) 1067, 1133
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 1192
Eco24I GRGCYC 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 735
Eco47I GGWCC 5 cut(s) 25, 151, 259, 559, 1438
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 795
Eco81I CCTNAGG 1 cut(s) 777
Eco91I GGTNACC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 242
EcoO109I RGGNCCY 3 cut(s) 151, 259, 1438
EcoO65I GGTNACC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 998
EcoRII CCWGG 1 cut(s) 1103
EcoT14I CCWWGG 1 cut(s) 1192
EcoT38I GRGCYC 1 cut(s) 244
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 1192
FaeI CATG 4 cut(s) 524, 665, 821, 1067
FaqI GGGAC 1 cut(s) 1424
FatI CATG 4 cut(s) 520, 661, 817, 1063
FokI GGATG 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 244
FspBI CTAG 4 cut(s) 453, 852, 954, 1498
GlaI GCGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 621
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 4 cut(s) 56, 683, 1318, 1410
HapII CCGG 2 cut(s) 230, 237
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 4 cut(s) 524, 665, 821, 1067
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 4 cut(s) 478, 770, 1024, 1229
HpaII CCGG 2 cut(s) 230, 237
HphI GGTGA 7 cut(s) 31, 244, 765, 905, 1079, 1211, 1238
Hpy166II GTNNAC 2 cut(s) 87, 1279
Hpy188I TCNGA 2 cut(s) 477, 574
Hpy188III TCNNGA 3 cut(s) 409, 954, 1284
Hpy8I GTNNAC 2 cut(s) 87, 1279
HpyAV CCTTC 5 cut(s) 109, 124, 970, 1281, 1429
HpyCH4III ACNGT 3 cut(s) 788, 1091, 1387
HpyCH4IV ACGT 2 cut(s) 134, 275
HpyF10VI GCNNNNNNNGC 7 cut(s) 625, 710, 719, 806, 836, 842, 875
HpyF3I CTNAG 2 cut(s) 636, 777
HpySE526I ACGT 2 cut(s) 134, 275
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 4 cut(s) 524, 665, 821, 1067
HspAI GCGC 1 cut(s) 72
KasI GGCGCC 1 cut(s) 71
Kzo9I GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
LmnI GCTCC 2 cut(s) 239, 247
LweI GCATC 3 cut(s) 235, 606, 787
MaeI CTAG 4 cut(s) 453, 852, 954, 1498
MaeII ACGT 2 cut(s) 134, 275
MaeIII GTNAC 3 cut(s) 232, 771, 985
MalI GATC 7 cut(s) 576, 747, 958, 981, 1137, 1190, 1203
MboI GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
MboII GAAGA 7 cut(s) 19, 319, 370, 470, 563, 834, 1033
MflI RGATCY 2 cut(s) 745, 956
MhlI GDGCHC 3 cut(s) 244, 311, 904
MluCI AATT 6 cut(s) 390, 512, 540, 998, 1180, 1259
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 779
MmeI TCCRAC 2 cut(s) 537, 602
MroXI GAANNNNTTC 1 cut(s) 568
MseI TTAA 6 cut(s) 317, 393, 525, 738, 1251, 1377
MslI CAYNNNNRTG 2 cut(s) 666, 1326
MspI CCGG 2 cut(s) 230, 237
MspR9I CCNGG 1 cut(s) 1105
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 1 cut(s) 1105
MwoI GCNNNNNNNGC 7 cut(s) 625, 710, 719, 806, 836, 842, 875
NarI GGCGCC 1 cut(s) 72
NdeII GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
NlaIII CATG 4 cut(s) 524, 665, 821, 1067
NlaIV GGNNCC 6 cut(s) 73, 153, 747, 903, 1333, 1440
NmuCI GTSAC 3 cut(s) 232, 771, 985
PasI CCCWGGG 1 cut(s) 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 568
PfeI GAWTC 3 cut(s) 478, 1024, 1229
PflMI CCANNNNNTGG 2 cut(s) 63, 420
PleI GAGTC 1 cut(s) 778
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 778
PpuMI RGGWCCY 3 cut(s) 151, 259, 1438
PsiI TTATAA 1 cut(s) 1149
Psp124BI GAGCTC 1 cut(s) 244
Psp1406I AACGTT 1 cut(s) 275
Psp5II RGGWCCY 3 cut(s) 151, 259, 1438
Psp6I CCWGG 1 cut(s) 1103
PspEI GGTNACC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 1103
PspN4I GGNNCC 6 cut(s) 73, 153, 747, 903, 1333, 1440
PspPI GGNCC 8 cut(s) 25, 54, 151, 259, 559, 682, 1316, 1438
PspPPI RGGWCCY 3 cut(s) 151, 259, 1438
PsuI RGATCY 2 cut(s) 745, 956
RsaI GTAC 5 cut(s) 35, 785, 816, 1047, 1213
RsaNI GTAC 5 cut(s) 34, 784, 815, 1046, 1212
RseI CAYNNNNRTG 2 cut(s) 666, 1326
SacI GAGCTC 1 cut(s) 244
SaqAI TTAA 6 cut(s) 317, 393, 525, 738, 1251, 1377
Sau3AI GATC 7 cut(s) 574, 745, 956, 979, 1135, 1188, 1201
Sau96I GGNCC 8 cut(s) 25, 54, 151, 259, 559, 682, 1316, 1438
SchI GAGTC 1 cut(s) 779
ScrFI CCNGG 1 cut(s) 1105
SduI GDGCHC 3 cut(s) 244, 311, 904
SfaNI GCATC 3 cut(s) 235, 606, 787
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 5 cut(s) 25, 151, 259, 559, 1438
SmiMI CAYNNNNRTG 2 cut(s) 666, 1326
Sse9I AATT 6 cut(s) 390, 512, 540, 998, 1180, 1259
SsiI CCGC 3 cut(s) 69, 165, 211
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 1 cut(s) 189
SspMI CTAG 4 cut(s) 453, 852, 954, 1498
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 1103
StyI CCWWGG 1 cut(s) 1192
TaaI ACNGT 3 cut(s) 788, 1091, 1387
TaiI ACGT 2 cut(s) 137, 278
TaqI TCGA 2 cut(s) 871, 1002
TaqII GACCGA 3 cut(s) 42, 576, 1473
TasI AATT 6 cut(s) 390, 512, 540, 998, 1180, 1259
TatI WGTACW 2 cut(s) 814, 1045
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 3 cut(s) 478, 1024, 1229
Tru1I TTAA 6 cut(s) 317, 393, 525, 738, 1251, 1377
Tru9I TTAA 6 cut(s) 317, 393, 525, 738, 1251, 1377
TscAI CASTG 8 cut(s) 135, 311, 337, 912, 946, 1094, 1213, 1425
TseFI GTSAC 3 cut(s) 232, 771, 985
Tsp45I GTSAC 3 cut(s) 232, 771, 985
TspDTI ATGAA 8 cut(s) 456, 564, 705, 1011, 1043, 1111, 1154, 1272
TspGWI ACGGA 4 cut(s) 62, 186, 234, 1004
TspRI CASTG 8 cut(s) 135, 311, 337, 912, 946, 1094, 1213, 1425
Van91I CCANNNNNTGG 2 cut(s) 63, 420
VpaK11BI GGWCC 5 cut(s) 25, 151, 259, 559, 1438
XapI RAATTY 3 cut(s) 512, 998, 1180
XbaI TCTAGA 1 cut(s) 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 568
XspI CTAG 4 cut(s) 453, 852, 954, 1498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.