ATCG00120

ATP synthase alpha/beta chain, C terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
Physical Location & Seq
Reverse (-)
9938 .. 11461
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG00120.1

Sequence Viewer

Length: 1524 bp
ATGGTAACCATTAGAGCCGACGAAATTAGTAATATTATCCGTGAACGTATTGAGCAATATAATAGAGAAGTAACGATTGTAAATACCGGTACCGTACTTCAAGTGGGCGATGGCATCGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTAGAATTTGAGGAGGGTACTATAGGTATTGCCCTTAATTTAGAATCCAATAATGTTGGTGTTGTATTAATGGGTGACGGTTTGATGATCCAAGAAGGAAGTTCAGTCAAAGCTACGGGAAAAATTGCTCAGATACCGGTGAGTGAGGCTTATTTGGGGCGTGTTATAAACGCCTTGGCTAACCCTATTGATGGTCGAGGTAAGATTTCCGCTTCTGAATCTCGGTTAATTGAATCTCCTGCCCCAGGTATTATTTCGAGACGTTCTGTATATGAGCCTCTTCAAACAGGACTTATTGCTATTGATTCCATGATCCCTATAGGACGCGGCCAGCGAGAATTAATTATTGGTGACAGACAGACCGGTAAAACAGCAGTAGCCACAGATACAATTCTCAATCAACAAGGCCAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCTTCTTCCGTGGCTCAGGTAGTGACCAGTTTACAGGAACGAGGGGCAATGGAATACACTATTGTGGTAGCTGAAACGGCCGATTCCCCAGCTACGTTACAATACCTCGCGCCTTATACAGGAGCAGCCTTGGCTGAATATTTTATGTACCGTGAACAACACACTTTAATAATTTATGATGATCTTTCCAAACAAGCACAAGCTTATCGACAAATGTCTCTTCTATTACGAAGACCGCCGGGTCGTGAAGCTTATCCAGGAGATGTTTTTTATTTACATTCACGTCTTTTAGAAAGAGCCGCTAAATTAAGCTCTCAATTAGGTGAAGGGAGTATGACTGCCTTACCAATCGTCGAGACCCAGTCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGACAAATATTCTTATCCGCCGATCTTTTTAATGCTGGAATCAGACCTGCTATTAATGTAGGGATTTCTGTCTCGAGAGTAGGATCCGCCGCTCAAATTAAAGCTATGAAACAGGTAGCTGGAAAATTAAAATTGGAATTGGCTCAATTCGCTGAATTAGAAGCCTTTTCCCAATTTTCTTCTGATCTCGATAAAGCTACTCAGAATCAATTGGCAAGAGGTCAACGATTGCGTGAGTTACTGAAACAATCCCAATCAGCCCCCCTCACAGTGGAAGAACAGATAATGACCATTTATACCGGAACAAATGGTTATCTGGATGGATTAGAAATTGGACAAGTAAGAAAATTTCTCGTTCAATTACGCACTTACTTAAAAACGAATAAACCTCAGTTTCAAGAAATCATAGCCTCTACCAAGACATTAACCGCTGAAGCAGAAAGCTTTTTGAAAGAAGGTATTCAAGAGCAACTAGAACGTTTCCTACTTCAGGAGAAAGTATAA

Protein Analysis

507

Amino Acids

55.33

Weight (kDa)

5.19

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 29 - 93 1.2e-17 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 150 - 365 1.1e-83 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C PF00306 372 - 496 3.6e-43 ATP synthase alpha/beta chain, C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AarI CACCTGC 1 cut(s) 140
AasI GACNNNNNNGTC 1 cut(s) 846
Acc36I ACCTGC 2 cut(s) 140, 1075
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 1112
AccII CGCG 2 cut(s) 486, 716
AciI CCGC 8 cut(s) 369, 486, 842, 906, 1038, 1107, 1110, 1449
AclI AACGTT 1 cut(s) 1498
AclWI GGATC 4 cut(s) 241, 466, 1098, 1111
AcoI YGGCCR 2 cut(s) 487, 684
AcsI RAATTY 2 cut(s) 164, 1367
AcuI CTGAAG 2 cut(s) 1473, 1493
AfaI GTAC 4 cut(s) 91, 96, 178, 755
AfiI CCNNNNNNNGG 5 cut(s) 350, 404, 725, 1291, 1510
AgeI ACCGGT 3 cut(s) 86, 295, 521
AgsI TTSAA 7 cut(s) 101, 392, 443, 1379, 1418, 1471, 1484
AjiI CACGTC 1 cut(s) 890
AjnI CCWGG 2 cut(s) 403, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AleI CACNNNNGTG 1 cut(s) 668
Alw26I GTCTC 4 cut(s) 412, 828, 956, 1096
AlwI GGATC 4 cut(s) 241, 466, 1098, 1111
Ama87I CYCGRG 1 cut(s) 1093
AoxI GGCC 3 cut(s) 487, 565, 684
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 2 cut(s) 164, 1367
AseI ATTAAT 3 cut(s) 227, 500, 1074
AsiGI ACCGGT 3 cut(s) 86, 295, 521
Asp700I GAANNNNTTC 1 cut(s) 1479
Asp718I GGTACC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 718
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 5 cut(s) 164, 245, 310, 521, 941
AvaI CYCGRG 1 cut(s) 1093
BamHI GGATCC 1 cut(s) 1103
BanI GGYRCC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 844
BbvI GCAGC 1 cut(s) 743
BccI CCATC 4 cut(s) 104, 344, 1013, 1334
BceAI ACGGC 1 cut(s) 699
BciT130I CCWGG 2 cut(s) 405, 864
BcnI CCSGG 1 cut(s) 846
BcoDI GTCTC 4 cut(s) 412, 828, 956, 1096
BfaI CTAG 1 cut(s) 1493
BfmI CTRYAG 2 cut(s) 180, 477
BfuAI ACCTGC 2 cut(s) 140, 1075
BisI GCNGC 4 cut(s) 487, 732, 906, 1110
BlsI GCNGC 4 cut(s) 488, 733, 907, 1111
Bme1390I CCNGG 3 cut(s) 405, 846, 864
BmeT110I CYCGRG 1 cut(s) 1093
BmgBI CACGTC 1 cut(s) 890
BmiI GGNNCC 2 cut(s) 91, 1105
BmrFI CCNGG 3 cut(s) 405, 846, 864
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 961
BoxI GACNNNNGTC 1 cut(s) 820
BpiI GAAGAC 1 cut(s) 844
Bpu10I CCTNAGC 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 846
BsaI GGTCTC 1 cut(s) 956
BsaJI CCNNGG 4 cut(s) 333, 403, 615, 735
BsaWI WCCGGW 4 cut(s) 86, 295, 521, 1319
Bsc4I CCNNNNNNNGG 5 cut(s) 350, 404, 725, 1291, 1510
Bse118I RCCGGY 3 cut(s) 86, 295, 521
Bse1I ACTGG 2 cut(s) 633, 967
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 2 cut(s) 405, 864
BseDI CCNNGG 4 cut(s) 333, 403, 615, 735
BseGI GGATG 1 cut(s) 1345
BseLI CCNNNNNNNGG 5 cut(s) 350, 404, 725, 1291, 1510
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 4 cut(s) 302, 635, 1235, 1424
BseNI ACTGG 2 cut(s) 633, 967
BseRI GAGGAG 1 cut(s) 185
BseX3I CGGCCG 1 cut(s) 684
BseXI GCAGC 1 cut(s) 743
BseYI CCCAGC 1 cut(s) 694
Bsh1236I CGCG 2 cut(s) 486, 716
Bsh1285I CGRYCG 1 cut(s) 687
BshFI GGCC 3 cut(s) 489, 567, 686
BshNI GGYRCC 1 cut(s) 89
BshTI ACCGGT 3 cut(s) 86, 295, 521
BsiEI CGRYCG 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 1093
BsiSI CCGG 5 cut(s) 87, 296, 522, 845, 1320
BslI CCNNNNNNNGG 5 cut(s) 350, 404, 725, 1291, 1510
BsmAI GTCTC 4 cut(s) 412, 828, 956, 1096
BsmBI CGTCTC 1 cut(s) 412
BsnI GGCC 3 cut(s) 489, 567, 686
Bso31I GGTCTC 1 cut(s) 956
BsoBI CYCGRG 1 cut(s) 1093
Bsp143I GATC 6 cut(s) 246, 471, 787, 1042, 1103, 1204
BspACI CCGC 8 cut(s) 369, 486, 842, 906, 1038, 1107, 1110, 1449
BspANI GGCC 3 cut(s) 489, 567, 686
BspCNI CTCAG 4 cut(s) 301, 634, 1234, 1423
BspFNI CGCG 2 cut(s) 486, 716
BspLI GGNNCC 2 cut(s) 91, 1105
BspMI ACCTGC 2 cut(s) 140, 1075
BspPI GGATC 4 cut(s) 241, 466, 1098, 1111
BspT107I GGYRCC 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 956
BsrBI CCGCTC 1 cut(s) 1112
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 3 cut(s) 86, 295, 521
BsrI ACTGG 2 cut(s) 633, 967
BssAI RCCGGY 3 cut(s) 86, 295, 521
BssECI CCNNGG 4 cut(s) 333, 403, 615, 735
BssMI GATC 6 cut(s) 246, 471, 787, 1042, 1103, 1204
BssT1I CCWWGG 2 cut(s) 333, 735
Bst2UI CCWGG 2 cut(s) 405, 864
Bst4CI ACNGT 4 cut(s) 94, 239, 758, 1291
Bst6I CTCTTC 2 cut(s) 444, 831
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 4 cut(s) 288, 621, 1221, 1410
BstDSI CCRYGG 1 cut(s) 615
BstEII GGTNACC 1 cut(s) 4
BstENI CCTNNNNNAGG 3 cut(s) 402, 723, 1508
BstF5I GGATG 1 cut(s) 1345
BstFNI CGCG 2 cut(s) 486, 716
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 6 cut(s) 249, 474, 790, 1045, 1106, 1207
BstMAI GTCTC 4 cut(s) 412, 828, 956, 1096
BstMBI GATC 6 cut(s) 246, 471, 787, 1042, 1103, 1204
BstMCI CGRYCG 1 cut(s) 687
BstMWI GCNNNNNNNGC 3 cut(s) 683, 737, 1169
BstNI CCWGG 2 cut(s) 405, 864
BstPAI GACNNNNGTC 1 cut(s) 820
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 3 cut(s) 403, 844, 862
BstSFI CTRYAG 2 cut(s) 180, 477
BstUI CGCG 2 cut(s) 486, 716
BstV1I GCAGC 1 cut(s) 743
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 1 cut(s) 1103
BstYI RGATCY 1 cut(s) 1103
BstZI CGGCCG 1 cut(s) 684
BsuRI GGCC 3 cut(s) 489, 567, 686
BtgI CCRYGG 1 cut(s) 615
BtgZI GCGATG 2 cut(s) 100, 123
BtrI CACGTC 1 cut(s) 890
BtsCI GGATG 1 cut(s) 1345
BtsIMutI CAGTG 1 cut(s) 1296
BveI ACCTGC 2 cut(s) 140, 1075
Cac8I GCNNGC 1 cut(s) 491
CfoI GCGC 1 cut(s) 718
Cfr10I RCCGGY 3 cut(s) 86, 295, 521
CseI GACGC 1 cut(s) 492
Csp6I GTAC 4 cut(s) 90, 95, 177, 754
CspAI ACCGGT 3 cut(s) 86, 295, 521
CviAII CATG 1 cut(s) 469
CviQI GTAC 4 cut(s) 90, 95, 177, 754
DdeI CTNAG 4 cut(s) 288, 621, 1221, 1410
DpnI GATC 6 cut(s) 248, 473, 789, 1044, 1105, 1206
DpnII GATC 6 cut(s) 246, 471, 787, 1042, 1103, 1204
DrdI GACNNNNNNGTC 1 cut(s) 846
DseDI GACNNNNNNGTC 1 cut(s) 846
EaeI YGGCCR 2 cut(s) 487, 684
EagI CGGCCG 1 cut(s) 684
Eam1104I CTCTTC 2 cut(s) 444, 831
EarI CTCTTC 2 cut(s) 444, 831
EciI GGCGGA 2 cut(s) 1027, 1096
EclXI CGGCCG 1 cut(s) 684
Eco130I CCWWGG 2 cut(s) 333, 735
Eco31I GGTCTC 1 cut(s) 956
Eco52I CGGCCG 1 cut(s) 684
Eco57I CTGAAG 2 cut(s) 1473, 1493
Eco88I CYCGRG 1 cut(s) 1093
Eco91I GGTNACC 1 cut(s) 4
EcoNI CCTNNNNNAGG 3 cut(s) 402, 723, 1508
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 403, 862
EcoT14I CCWWGG 2 cut(s) 333, 735
ErhI CCWWGG 2 cut(s) 333, 735
Esp3I CGTCTC 1 cut(s) 412
FaeI CATG 1 cut(s) 472
FatI CATG 1 cut(s) 468
Fnu4HI GCNGC 4 cut(s) 487, 732, 906, 1110
FokI GGATG 1 cut(s) 1352
Fsp4HI GCNGC 4 cut(s) 487, 732, 906, 1110
FspBI CTAG 1 cut(s) 1493
GlaI GCGC 1 cut(s) 717
GluI GCNGC 4 cut(s) 487, 732, 906, 1110
GsaI CCCAGC 1 cut(s) 698
HaeIII GGCC 3 cut(s) 489, 567, 686
HapII CCGG 5 cut(s) 87, 296, 522, 845, 1320
HgaI GACGC 1 cut(s) 492
HhaI GCGC 1 cut(s) 718
Hin1II CATG 1 cut(s) 472
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 1 cut(s) 1244
HindII GTYRAC 1 cut(s) 1244
HindIII AAGCTT 4 cut(s) 606, 807, 855, 1462
HinfI GANTC 7 cut(s) 203, 377, 392, 464, 689, 1059, 1225
HpaII CCGG 5 cut(s) 87, 296, 522, 845, 1320
HphI GGTGA 5 cut(s) 164, 245, 310, 521, 941
Hpy166II GTNNAC 4 cut(s) 44, 638, 761, 1244
Hpy188I TCNGA 5 cut(s) 291, 376, 1064, 1204, 1224
Hpy8I GTNNAC 4 cut(s) 44, 638, 761, 1244
Hpy99I CGWCG 2 cut(s) 23, 962
HpyAV CCTTC 3 cut(s) 248, 926, 1469
HpyCH4III ACNGT 4 cut(s) 94, 239, 758, 1291
HpyCH4IV ACGT 5 cut(s) 46, 421, 701, 889, 1498
HpyF10VI GCNNNNNNNGC 3 cut(s) 683, 737, 1169
HpyF3I CTNAG 4 cut(s) 288, 621, 1221, 1410
HpySE526I ACGT 5 cut(s) 46, 421, 701, 889, 1498
Hsp92II CATG 1 cut(s) 472
HspAI GCGC 1 cut(s) 716
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 6 cut(s) 246, 471, 787, 1042, 1103, 1204
LmnI GCTCC 1 cut(s) 728
Lsp1109I GCAGC 1 cut(s) 743
LweI GCATC 1 cut(s) 123
MaeI CTAG 1 cut(s) 1493
MaeII ACGT 5 cut(s) 46, 421, 701, 889, 1498
MaeIII GTNAC 7 cut(s) 4, 70, 233, 509, 628, 702, 1257
MalI GATC 6 cut(s) 248, 473, 789, 1044, 1105, 1206
MbiI CCGCTC 1 cut(s) 1112
MboI GATC 6 cut(s) 246, 471, 787, 1042, 1103, 1204
MboII GAAGA 6 cut(s) 431, 603, 818, 849, 1191, 1307
MfeI CAATTG 1 cut(s) 1229
MflI RGATCY 1 cut(s) 1103
MroXI GAANNNNTTC 1 cut(s) 1479
MslI CAYNNNNRTG 1 cut(s) 668
MspA1I CMGCKG 1 cut(s) 1451
MspI CCGG 5 cut(s) 87, 296, 522, 845, 1320
MspR9I CCNGG 3 cut(s) 405, 846, 864
MunI CAATTG 1 cut(s) 1229
MvaI CCWGG 2 cut(s) 405, 864
MvnI CGCG 2 cut(s) 486, 716
MwoI GCNNNNNNNGC 3 cut(s) 683, 737, 1169
NciI CCSGG 1 cut(s) 846
NdeII GATC 6 cut(s) 246, 471, 787, 1042, 1103, 1204
NlaIII CATG 1 cut(s) 472
NlaIV GGNNCC 2 cut(s) 91, 1105
NmuCI GTSAC 3 cut(s) 233, 509, 628
OliI CACNNNNGTG 1 cut(s) 668
PaeR7I CTCGAG 1 cut(s) 1093
PaqCI CACCTGC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 1479
PfeI GAWTC 7 cut(s) 203, 377, 392, 464, 689, 1059, 1225
PflFI GACNNNGTC 1 cut(s) 967
PfoI TCCNGGA 1 cut(s) 862
PinAI ACCGGT 3 cut(s) 86, 295, 521
PkrI GCNGC 4 cut(s) 488, 733, 907, 1111
PshAI GACNNNNGTC 1 cut(s) 820
PshBI ATTAAT 3 cut(s) 227, 500, 1074
PsiI TTATAA 1 cut(s) 326
Psp1406I AACGTT 1 cut(s) 1498
Psp6I CCWGG 2 cut(s) 403, 862
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 694
PspGI CCWGG 2 cut(s) 403, 862
PspN4I GGNNCC 2 cut(s) 91, 1105
PsrI GAACNNNNNNTAC 2 cut(s) 1488, 1520
PsuI RGATCY 1 cut(s) 1103
PsyI GACNNNGTC 1 cut(s) 967
RsaI GTAC 4 cut(s) 91, 96, 178, 755
RsaNI GTAC 4 cut(s) 90, 95, 177, 754
RseI CAYNNNNRTG 1 cut(s) 668
SatI GCNGC 4 cut(s) 487, 732, 906, 1110
Sau3AI GATC 6 cut(s) 246, 471, 787, 1042, 1103, 1204
ScrFI CCNGG 3 cut(s) 405, 846, 864
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 2 cut(s) 180, 477
Sfr274I CTCGAG 1 cut(s) 1093
SlaI CTCGAG 1 cut(s) 1093
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 1093
SmoI CTYRAG 1 cut(s) 1093
SsiI CCGC 8 cut(s) 369, 486, 842, 906, 1038, 1107, 1110, 1449
SspI AATATT 3 cut(s) 34, 746, 1029
SspMI CTAG 1 cut(s) 1493
StyD4I CCNGG 3 cut(s) 403, 844, 862
StyI CCWWGG 2 cut(s) 333, 735
TaaI ACNGT 4 cut(s) 94, 239, 758, 1291
TaiI ACGT 5 cut(s) 49, 424, 704, 892, 1501
TaqI TCGA 6 cut(s) 355, 416, 814, 960, 1094, 1209
TauI GCSGC 3 cut(s) 489, 908, 1112
TfiI GAWTC 7 cut(s) 203, 377, 392, 464, 689, 1059, 1225
TscAI CASTG 1 cut(s) 1296
TseFI GTSAC 3 cut(s) 233, 509, 628
TseI GCWGC 1 cut(s) 731
Tsp45I GTSAC 3 cut(s) 233, 509, 628
TspDTI ATGAA 2 cut(s) 153, 1142
TspGWI ACGGA 2 cut(s) 29, 604
TspRI CASTG 1 cut(s) 1296
Tth111I GACNNNGTC 1 cut(s) 967
VspI ATTAAT 3 cut(s) 227, 500, 1074
XagI CCTNNNNNAGG 3 cut(s) 402, 723, 1508
XapI RAATTY 2 cut(s) 164, 1367
XhoI CTCGAG 1 cut(s) 1093
XmnI GAANNNNTTC 1 cut(s) 1479
XspI CTAG 1 cut(s) 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.