Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009873

Physical Location & Seq

Genomic Coordinates Forward (+)

19769687 .. 19772255

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAAAAGCACACAGCGAAGTGAATGCATGAATAATGTGCTTAAGAAATATTTGAAGCCAGAGCATAATCTTTTGCGGTTTTTCGAACATTATGAAAGAGTTTTGGCTGATCAAAGATATCAAGAGTTGATTGCTGAATATAAGATGATACAAACAACTCCTGTCTTAGCAGTAAGTGCACATATGCTGCAACATGGAGCAGATGTCTATACTCCAGAGGTTGTCTTGCTCTTTCAGAAAGAATTTGTGAGAATTCATAATTATAGTACTTACAAGGAGTCGATTGGCAAACGGTATGGCTACTTGTGCCGCACTTCTCGTGATACTTTAACTGTTGCAGCAGATGATGAAGAGTTAACGAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGTTAATAAAGAAAAATCGCACTGAGAAAGAGGGGAGAAGTTCTAGTGATAGTAGAGAAGTGAATACTACTTTGGGTGAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTGTCCGTGGAGTTAAAAGAAAAGCTACAATTGGCCGTCCACGTACCAGATTCAAAGACCCGATTGAACAAAAAAAGAGTGAAGTACCAAAGAAAACCACAAAAGCTCCCACAAGAAGGAAAATACCCATGCAGGAATTTGAAAGCAACGGTGTCAGTTCAAAAACACAAGGAAATAGTGAACATGATGTTCAACTATCTGCTGTTGAATTTTTAGTGGCTGTGGTCAGCCAAGTTCTTTGCCCAACTTATGCAGCAAAACGGTGCCTTTCAACACCCATAGTCGCACTCCTTATTAGACTAGGAATAATAACAAAACTCTTCACTAGGGCTGGGCGTCTGGACCCGAAAACCCGAGAACCCGGCCCGAACCGATCAAAAAAGCCCGATTCGGTTCGGTTTTGTATTGGAAAATACCGGTTCGGTGCAAAGCCTGACCCGAATTACAATTTATCGGGTCGGTCTCGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006952 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0010287 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_C

Protein Analysis

334

Amino Acids

38.08

Weight (kDa)

9.57

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00120
malus_domestica	MD16G1271600.v1.1
pyrus_communis	pycom12397g00030 pycom12397g00350
rosa_chinensis	RchiOBHm_CPg0502461
rosa_laevigata	RLG00000000010 RLG00000000051 RLG00000000091 RLG00000000171 RLG00000000236 RLG00000000251 RLG00000000279 RLG00000000309 RLG00000023688
rosa_multiflora	Rmu_sc0002735.1_g000002 Rmu_sc0002735.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119120
rosa_rugosa	Rorug02G0491100 Rorug02G0491200 Rorug03G0216800 RorugMtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	795
AciI	CCGC	2 cut(s)	76, 310
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	4 cut(s)	242, 252, 668, 740
AcyI	GRCGYC	1 cut(s)	868
AfaI	GTAC	3 cut(s)	268, 577, 618
AfiI	CCNNNNNNNGG	1 cut(s)	648
AflII	CTTAAG	1 cut(s)	41
AgeI	ACCGGT	1 cut(s)	948
AgsI	TTSAA	9 cut(s)	55, 509, 586, 599, 674, 693, 725, 740, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	2 cut(s)	557, 638
AluI	AGCT	2 cut(s)	557, 638
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	999
Alw44I	GTGCAC	1 cut(s)	177
Ama87I	CYCGRG	2 cut(s)	885, 996
AoxI	GGCC	2 cut(s)	565, 895
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	3 cut(s)	187, 338, 785
ApoI	RAATTY	4 cut(s)	242, 252, 668, 740
AsiGI	ACCGGT	1 cut(s)	948
AspS9I	GGNCC	2 cut(s)	874, 896
AsuC2I	CCSGG	1 cut(s)	894
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	84
AvaI	CYCGRG	2 cut(s)	885, 996
AvaII	GGWCC	1 cut(s)	874
BaeGI	GKGCMC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	795
BauI	CACGAG	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	3 cut(s)	174, 350, 797
BceAI	ACGGC	1 cut(s)	552
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	894
BcoDI	GTCTC	1 cut(s)	999
BfaI	CTAG	3 cut(s)	447, 833, 858
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	4 cut(s)	188, 310, 339, 786
BlsI	GCNGC	4 cut(s)	189, 311, 340, 787
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	894
Bme18I	GGWCC	1 cut(s)	874
BmeT110I	CYCGRG	2 cut(s)	885, 996
BmgT120I	GGNCC	2 cut(s)	874, 896
BmiI	GGNNCC	2 cut(s)	797, 876
BmrFI	CCNGG	1 cut(s)	894
BmsI	GCATC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	894
BsaAI	YACGTR	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	868
BsaI	GGTCTC	1 cut(s)	999
BsaJI	CCNNGG	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	948
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 622, 652
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse118I	RCCGGY	1 cut(s)	948
BseDI	CCNNGG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	174, 350, 797
BseYI	CCCAGC	1 cut(s)	863
BshFI	GGCC	2 cut(s)	567, 897
BshNI	GGYRCC	1 cut(s)	795
BshTI	ACCGGT	1 cut(s)	948
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	2 cut(s)	885, 996
BsiSI	CCGG	2 cut(s)	894, 949
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	1 cut(s)	999
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	567, 897
Bso31I	GGTCTC	1 cut(s)	999
BsoBI	CYCGRG	2 cut(s)	885, 996
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	109, 905
BspACI	CCGC	2 cut(s)	76, 310
BspANI	GGCC	2 cut(s)	567, 897
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	797, 876
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	795
BspTI	CTTAAG	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	999
BsrFI	RCCGGY	1 cut(s)	948
BssAI	RCCGGY	1 cut(s)	948
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	2 cut(s)	109, 905
BssNI	GRCGYC	1 cut(s)	868
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst4CI	ACNGT	4 cut(s)	294, 334, 683, 795
Bst6I	CTCTTC	3 cut(s)	345, 483, 857
BstACI	GRCGYC	1 cut(s)	868
BstAFI	CTTAAG	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	166, 400, 426
BstDSI	CCRYGG	1 cut(s)	538
BstKTI	GATC	2 cut(s)	112, 908
BstMAI	GTCTC	1 cut(s)	999
BstMBI	GATC	2 cut(s)	109, 905
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 306
BstSCI	CCNGG	1 cut(s)	892
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	3 cut(s)	174, 350, 797
BsuRI	GGCC	2 cut(s)	567, 897
BtgI	CCRYGG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	423
Cfr10I	RCCGGY	1 cut(s)	948
Cfr13I	GGNCC	2 cut(s)	874, 896
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	3 cut(s)	267, 576, 617
CspAI	ACCGGT	1 cut(s)	948
CviAII	CATG	5 cut(s)	28, 194, 371, 661, 716
CviQI	GTAC	3 cut(s)	267, 576, 617
DdeI	CTNAG	3 cut(s)	166, 400, 426
DpnI	GATC	2 cut(s)	111, 907
DpnII	GATC	2 cut(s)	109, 905
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	3 cut(s)	345, 483, 857
EarI	CTCTTC	3 cut(s)	345, 483, 857
Eco31I	GGTCTC	1 cut(s)	999
Eco32I	GATATC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	874
Eco88I	CYCGRG	2 cut(s)	885, 996
EcoRI	GAATTC	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	29
FaeI	CATG	5 cut(s)	31, 197, 374, 664, 719
FatI	CATG	5 cut(s)	27, 193, 370, 660, 715
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	4 cut(s)	188, 310, 339, 786
Fsp4HI	GCNGC	4 cut(s)	188, 310, 339, 786
FspBI	CTAG	3 cut(s)	447, 833, 858
GluI	GCNGC	4 cut(s)	188, 310, 339, 786
GsaI	CCCAGC	1 cut(s)	867
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	567, 897
HapII	CCGG	2 cut(s)	894, 949
HgaI	GACGC	1 cut(s)	857
Hin1I	GRCGYC	1 cut(s)	868
Hin1II	CATG	5 cut(s)	31, 197, 374, 664, 719
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	278, 582, 920
HpaI	GTTAAC	1 cut(s)	357
HpaII	CCGG	2 cut(s)	894, 949
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	4 cut(s)	179, 357, 572, 713
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	4 cut(s)	122, 215, 320, 872
Hpy8I	GTNNAC	4 cut(s)	179, 357, 572, 713
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	4 cut(s)	294, 334, 683, 795
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	8 cut(s)	27, 179, 190, 338, 368, 664, 785, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 306
HpyF3I	CTNAG	3 cut(s)	166, 400, 426
HpySE526I	ACGT	1 cut(s)	574
Hsp92I	GRCGYC	1 cut(s)	868
Hsp92II	CATG	5 cut(s)	31, 197, 374, 664, 719
Ksp22I	TGATCA	1 cut(s)	109
KspAI	GTTAAC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	109, 905
LmnI	GCTCC	2 cut(s)	197, 643
Lsp1109I	GCAGC	3 cut(s)	174, 350, 797
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	3 cut(s)	447, 833, 858
MaeII	ACGT	1 cut(s)	574
MalI	GATC	2 cut(s)	111, 907
MboI	GATC	2 cut(s)	109, 905
MboII	GAAGA	3 cut(s)	362, 500, 844
MfeI	CAATTG	2 cut(s)	531, 561
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	9 cut(s)	242, 252, 259, 531, 561, 668, 740, 973, 979
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	211, 427, 484, 490
Mph1103I	ATGCAT	1 cut(s)	29
MseI	TTAA	5 cut(s)	42, 329, 356, 407, 546
MslI	CAYNNNNRTG	1 cut(s)	373
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	2 cut(s)	894, 949
MspR9I	CCNGG	1 cut(s)	894
MunI	CAATTG	2 cut(s)	531, 561
Mva1269I	GAATGC	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	176, 306
NciI	CCSGG	1 cut(s)	894
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	2 cut(s)	109, 905
NlaIII	CATG	5 cut(s)	31, 197, 374, 664, 719
NlaIV	GGNNCC	2 cut(s)	797, 876
NsiI	ATGCAT	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	84
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	582, 920
PinAI	ACCGGT	1 cut(s)	948
PkrI	GCNGC	4 cut(s)	189, 311, 340, 787
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	863
PspN4I	GGNNCC	2 cut(s)	797, 876
PspPI	GGNCC	2 cut(s)	874, 896
RsaI	GTAC	3 cut(s)	268, 577, 618
RsaNI	GTAC	3 cut(s)	267, 576, 617
RseI	CAYNNNNRTG	1 cut(s)	373
SaqAI	TTAA	5 cut(s)	42, 329, 356, 407, 546
SatI	GCNGC	4 cut(s)	188, 310, 339, 786
Sau3AI	GATC	2 cut(s)	109, 905
Sau96I	GGNCC	2 cut(s)	874, 896
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	894
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	5 cut(s)	222, 495, 559, 577, 640
SfaNI	GCATC	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	874
SmiMI	CAYNNNNRTG	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	9 cut(s)	242, 252, 259, 531, 561, 668, 740, 973, 979
SsiI	CCGC	2 cut(s)	76, 310
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	3 cut(s)	447, 833, 858
StyD4I	CCNGG	1 cut(s)	892
TaaI	ACNGT	4 cut(s)	294, 334, 683, 795
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	2 cut(s)	84, 281
TaqII	GACCGA	1 cut(s)	981
TasI	AATT	9 cut(s)	242, 252, 259, 531, 561, 668, 740, 973, 979
TatI	WGTACW	1 cut(s)	266
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	582, 920
Tru1I	TTAA	5 cut(s)	42, 329, 356, 407, 546
Tru9I	TTAA	5 cut(s)	42, 329, 356, 407, 546
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	3 cut(s)	187, 338, 785
TspDTI	ATGAA	6 cut(s)	17, 44, 108, 245, 363, 387
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	430
Vha464I	CTTAAG	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	874
XapI	RAATTY	4 cut(s)	242, 252, 668, 740
XspI	CTAG	3 cut(s)	447, 833, 858
ZrmI	AGTACT	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.