Rorug02G0491100

ATP synthase subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009873
Physical Location & Seq
Reverse (-)
62007349 .. 62008662
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0491100.1

Sequence Viewer

Length: 1314 bp
ATGTCGAACATTAATTCTGTCACCAAAAGCTTTGCTACCTCACTGGCTATTGCTACCAATGAGGTTGTGGACATCTCCTCCATGGTGGATGGGGGAGCACAGCGGAATGCTCAATCGTATCTTCTGGCAAGGCCTCTGACTCTGAAACCAACAAATGTTGCTGATCTGCGTAGGCATTTTCGTCGCATTTGGGTGCTAAATAAAGGCTTCAGCGTCCAACAAAAAGCTCCGAATCGTTTTCTTTTCTTCTTTGATCTTAGGGGAGATAGAAACAAGGTATTAATTGGTGGACTGTGGAGTTTTAATCGGGCTTTGGTTGTTATTCAGCCTTATGATGGAGTGGCACCTCTGCAATCTGTAGAGATGGAGGATCTTTTCTTTTGGGTTCGGATCACCAATATGCCACCAGCATATGAGCAGAGGAAGACTATTGCCAACGTTGCCTCTGTTGCGGGTAAATTTCTTTATCTAGATCAAAAGCTATTTGATGCAACTCGTGATATTAGGGTTAGGGTTTCTCAGGCAATTTCGAAACCCTTTTTTCTGCACAAAACCCTAAAGTTTGCCACAGGGGTTGAGCAAGAAGTTCACTTCTTCTTTGAGAATCTGGTGGGCAAATGCAATACTTGCCATTGTGTGTATCATAAGGGTGATCCATGTAAGGCTGAAAATACCACACCAACAAGCATGGCTACTCCTTCGTCGGCGGCAAGAAAATTGGAACTTGATAGTCCTTTTGTAGGGTTTCAAGCAAATCAATTCAAGGATGGACTGTTTCACTTCCAAGGTCTTACTACCCCCATTCTTCCGCCTGTGGGAAAGTCTCTTTTTGGAGGGGCTGAGACAAGTAAGGTACGCAAGCCCATTGTTATTCGTAATGCAGAGAAAAAACAAGCTAATGAAGATAATGCTTTGGCTCTGGTACTCGTGGACACTGACCAGTCTACAAAGAGGGATCGTCCCTTTCCATCTCCAAAGAAGTTGCAATTTTTGATGTCTGATTTAGTGGAGGGCAAAACTAGCCCTATTGCTCCCTCAAAGAAAGTGAAGATGCCTGAATTCCCTACAAAGTTTAATGCAAAATCTCTTGGATTAGTGGAGACACCAGGTGGTTTGCTAGTGCCTGTGGAGGTTATGATGCCTAAACCGGTAAACGTAGAGCTTCCTGGAGGCAAGAAGAAGAGAGGTAGACCATTGGGAGCCAAGAACAAAAATCATCCCAAAGCAAAAAAGATTCCTGCTGAAGATGTCCTGAGTGTTCTGTATTCGGGTAAGCCTCCAAGCCCTAGTCTAAAGGGCAAGGAGAAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_C ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

437

Amino Acids

48.46

Weight (kDa)

9.92

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 38 - 112 8e-08 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccI GTMKAC 2 cut(s) 944, 1189
AciI CCGC 4 cut(s) 103, 452, 707, 809
AclI AACGTT 1 cut(s) 438
AclWI GGATC 4 cut(s) 378, 398, 647, 963
AcsI RAATTY 2 cut(s) 458, 1058
AcuI CTGAAG 2 cut(s) 193, 1263
AdeI CACNNNGTG 1 cut(s) 1109
AfaI GTAC 2 cut(s) 855, 924
AfiI CCNNNNNNNGG 3 cut(s) 335, 740, 815
AgeI ACCGGT 1 cut(s) 1147
AgsI TTSAA 2 cut(s) 749, 763
AjnI CCWGG 2 cut(s) 1105, 1165
AluBI AGCT 5 cut(s) 30, 227, 481, 896, 1162
AluI AGCT 5 cut(s) 30, 227, 481, 896, 1162
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 3 cut(s) 828, 836, 1094
AlwI GGATC 4 cut(s) 378, 398, 647, 963
AoxI GGCC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 458, 1058
AseI ATTAAT 2 cut(s) 12, 281
AsiGI ACCGGT 1 cut(s) 1147
AsuHPI GGTGA 3 cut(s) 13, 385, 662
AsuII TTCGAA 1 cut(s) 530
BanI GGYRCC 1 cut(s) 343
BauI CACGAG 2 cut(s) 495, 926
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 100
BccI CCATC 5 cut(s) 83, 329, 358, 761, 976
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 2 cut(s) 1107, 1167
BcoDI GTCTC 3 cut(s) 828, 836, 1094
BfaI CTAG 4 cut(s) 470, 1020, 1118, 1287
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 1 cut(s) 708
BlsI GCNGC 1 cut(s) 709
Bme1390I CCNGG 2 cut(s) 1107, 1167
BmiI GGNNCC 2 cut(s) 345, 1201
BmrFI CCNGG 2 cut(s) 1107, 1167
BmsI GCATC 3 cut(s) 478, 1041, 1128
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 1188
Bpu14I TTCGAA 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 81, 784
BsaWI WCCGGW 1 cut(s) 1147
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 3 cut(s) 335, 740, 815
Bse118I RCCGGY 1 cut(s) 1147
Bse1I ACTGG 2 cut(s) 48, 940
BseBI CCWGG 2 cut(s) 1107, 1167
BseDI CCNNGG 2 cut(s) 81, 784
BseGI GGATG 3 cut(s) 94, 772, 1216
BseLI CCNNNNNNNGG 3 cut(s) 335, 740, 815
BseMII CTCAG 3 cut(s) 533, 831, 1244
BseNI ACTGG 2 cut(s) 48, 940
BseRI GAGGAG 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 530
BshFI GGCC 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 343
BshTI ACCGGT 1 cut(s) 1147
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 1148
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 3 cut(s) 335, 740, 815
BsmAI GTCTC 3 cut(s) 828, 836, 1094
BsmFI GGGAC 1 cut(s) 945
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 7 cut(s) 163, 253, 370, 390, 472, 652, 955
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 4 cut(s) 103, 452, 707, 809
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 3 cut(s) 532, 832, 1245
BspLI GGNNCC 2 cut(s) 345, 1201
BspPI GGATC 4 cut(s) 378, 398, 647, 963
BspT104I TTCGAA 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 1147
BsrI ACTGG 2 cut(s) 48, 940
BssAI RCCGGY 1 cut(s) 1147
BssECI CCNNGG 2 cut(s) 81, 784
BssMI GATC 7 cut(s) 163, 253, 370, 390, 472, 652, 955
BssSI CACGAG 2 cut(s) 495, 926
BssT1I CCWWGG 2 cut(s) 81, 784
Bst2BI CACGAG 2 cut(s) 495, 926
Bst2UI CCWGG 2 cut(s) 1107, 1167
Bst4CI ACNGT 2 cut(s) 294, 774
Bst6I CTCTTC 1 cut(s) 1175
BstAPI GCANNNNNTGC 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 860
BstDEI CTNAG 4 cut(s) 257, 519, 840, 1253
BstDSI CCRYGG 1 cut(s) 81
BstENI CCTNNNNNAGG 1 cut(s) 738
BstF5I GGATG 3 cut(s) 94, 772, 1216
BstKTI GATC 7 cut(s) 166, 256, 373, 393, 475, 655, 958
BstMAI GTCTC 3 cut(s) 828, 836, 1094
BstMBI GATC 7 cut(s) 163, 253, 370, 390, 472, 652, 955
BstMWI GCNNNNNNNGC 4 cut(s) 440, 449, 627, 1020
BstNI CCWGG 2 cut(s) 1107, 1167
BstSCI CCNGG 2 cut(s) 1105, 1165
BstSFI CTRYAG 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 3 cut(s) 94, 772, 1216
BtsIMutI CAGTG 2 cut(s) 41, 933
Cac8I GCNNGC 1 cut(s) 860
Cfr10I RCCGGY 1 cut(s) 1147
CseI GACGC 1 cut(s) 202
CsiI ACCWGGT 1 cut(s) 1105
Csp6I GTAC 2 cut(s) 854, 923
CspAI ACCGGT 1 cut(s) 1147
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 3 cut(s) 82, 657, 688
CviQI GTAC 2 cut(s) 854, 923
DdeI CTNAG 4 cut(s) 257, 519, 840, 1253
DpnI GATC 7 cut(s) 165, 255, 372, 392, 474, 654, 957
DpnII GATC 7 cut(s) 163, 253, 370, 390, 472, 652, 955
DraIII CACNNNGTG 1 cut(s) 1109
Eam1104I CTCTTC 1 cut(s) 1175
EarI CTCTTC 1 cut(s) 1175
EciI GGCGGA 1 cut(s) 798
Eco130I CCWWGG 2 cut(s) 81, 784
Eco147I AGGCCT 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 193, 1263
EcoNI CCTNNNNNAGG 1 cut(s) 738
EcoRI GAATTC 1 cut(s) 1058
EcoRII CCWGG 2 cut(s) 1105, 1165
EcoT14I CCWWGG 2 cut(s) 81, 784
ErhI CCWWGG 2 cut(s) 81, 784
FaeI CATG 3 cut(s) 85, 660, 691
FaqI GGGAC 1 cut(s) 945
FatI CATG 3 cut(s) 81, 656, 687
FauI CCCGC 1 cut(s) 445
FauNDI CATATG 1 cut(s) 412
FblI GTMKAC 2 cut(s) 944, 1189
Fnu4HI GCNGC 1 cut(s) 708
FokI GGATG 3 cut(s) 101, 779, 1203
Fsp4HI GCNGC 1 cut(s) 708
FspBI CTAG 4 cut(s) 470, 1020, 1118, 1287
GluI GCNGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 1188
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 1148
HgaI GACGC 1 cut(s) 202
Hin1II CATG 3 cut(s) 85, 660, 691
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 4 cut(s) 139, 232, 604, 1234
HpaII CCGG 1 cut(s) 1148
HphI GGTGA 3 cut(s) 13, 385, 662
Hpy166II GTNNAC 7 cut(s) 70, 290, 589, 931, 945, 1153, 1190
Hpy188I TCNGA 5 cut(s) 138, 144, 231, 390, 1000
Hpy188III TCNNGA 3 cut(s) 470, 497, 1252
Hpy8I GTNNAC 7 cut(s) 70, 290, 589, 931, 945, 1153, 1190
Hpy99I CGWCG 2 cut(s) 186, 706
HpyAV CCTTC 1 cut(s) 708
HpyCH4III ACNGT 2 cut(s) 294, 774
HpyCH4IV ACGT 2 cut(s) 438, 1155
HpyCH4V TGCA 7 cut(s) 352, 491, 547, 621, 881, 985, 1079
HpyF10VI GCNNNNNNNGC 4 cut(s) 440, 449, 627, 1020
HpyF3I CTNAG 4 cut(s) 257, 519, 840, 1253
HpySE526I ACGT 2 cut(s) 438, 1155
Hsp92II CATG 3 cut(s) 85, 660, 691
Kzo9I GATC 7 cut(s) 163, 253, 370, 390, 472, 652, 955
LmnI GCTCC 4 cut(s) 95, 232, 1036, 1199
LweI GCATC 3 cut(s) 478, 1041, 1128
MabI ACCWGGT 1 cut(s) 1105
MaeI CTAG 4 cut(s) 470, 1020, 1118, 1287
MaeII ACGT 2 cut(s) 438, 1155
MaeIII GTNAC 1 cut(s) 19
MalI GATC 7 cut(s) 165, 255, 372, 392, 474, 654, 957
MboI GATC 7 cut(s) 163, 253, 370, 390, 472, 652, 955
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 8 cut(s) 13, 282, 458, 525, 716, 758, 986, 1058
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 241
MseI TTAA 4 cut(s) 12, 281, 303, 1074
MslI CAYNNNNRTG 3 cut(s) 191, 398, 648
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 1148
MspR9I CCNGG 2 cut(s) 1107, 1167
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 2 cut(s) 1107, 1167
MwoI GCNNNNNNNGC 4 cut(s) 440, 449, 627, 1020
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 412
NdeII GATC 7 cut(s) 163, 253, 370, 390, 472, 652, 955
NlaIII CATG 3 cut(s) 85, 660, 691
NlaIV GGNNCC 2 cut(s) 345, 1201
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 530
PceI AGGCCT 1 cut(s) 133
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 3 cut(s) 232, 604, 1234
PfoI TCCNGGA 1 cut(s) 1165
PinAI ACCGGT 1 cut(s) 1147
PkrI GCNGC 1 cut(s) 709
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PshBI ATTAAT 2 cut(s) 12, 281
Psp1406I AACGTT 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 1105, 1165
PspGI CCWGG 2 cut(s) 1105, 1165
PspN4I GGNNCC 2 cut(s) 345, 1201
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 2 cut(s) 855, 924
RsaNI GTAC 2 cut(s) 854, 923
RseI CAYNNNNRTG 3 cut(s) 191, 398, 648
SaqAI TTAA 4 cut(s) 12, 281, 303, 1074
SatI GCNGC 1 cut(s) 708
Sau3AI GATC 7 cut(s) 163, 253, 370, 390, 472, 652, 955
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 1107, 1167
SduI GDGCHC 1 cut(s) 100
SexAI ACCWGGT 1 cut(s) 1105
SfaNI GCATC 3 cut(s) 478, 1041, 1128
SfcI CTRYAG 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 530
SmiMI CAYNNNNRTG 3 cut(s) 191, 398, 648
Sse9I AATT 8 cut(s) 13, 282, 458, 525, 716, 758, 986, 1058
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 4 cut(s) 103, 452, 707, 809
SspMI CTAG 4 cut(s) 470, 1020, 1118, 1287
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 2 cut(s) 1105, 1165
StyI CCWWGG 2 cut(s) 81, 784
TaaI ACNGT 2 cut(s) 294, 774
TaiI ACGT 2 cut(s) 441, 1158
TaqI TCGA 2 cut(s) 5, 530
TasI AATT 8 cut(s) 13, 282, 458, 525, 716, 758, 986, 1058
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 3 cut(s) 232, 604, 1234
Tru1I TTAA 4 cut(s) 12, 281, 303, 1074
Tru9I TTAA 4 cut(s) 12, 281, 303, 1074
TscAI CASTG 2 cut(s) 48, 940
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 915
TspRI CASTG 2 cut(s) 48, 940
VspI ATTAAT 2 cut(s) 12, 281
XagI CCTNNNNNAGG 1 cut(s) 738
XapI RAATTY 2 cut(s) 458, 1058
XbaI TCTAGA 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 2 cut(s) 944, 1189
XspI CTAG 4 cut(s) 470, 1020, 1118, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.