RLG00000023688

ATP synthase subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009873
Physical Location & Seq
Forward (+)
27122122 .. 27125051
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023688

Sequence Viewer

Length: 666 bp
ATGAAAGTCGGTGCACTATTCATAAGAGTTTACTGTTCGAAAGGGGGTTGGAAGTTGGAACTTGAAGAAGGTACGATAGGCATTGCTCTGAATTTGGAATCAAATAATGTTGGTGTTGTATTAATGGGTGACGGTTTGATGATACAAGAGGGGAGTTCTGTAAAAGCAACGGGAAGAATTGCTCAGATCCCAGTAAGTGAGGCGTTTTTAGGTCGTGTTGTAAATGCACTGGCTAAACCTATTGATGGCCGGGGCGAAATTTCAGCCTCTGAATCTCGGTTAATTGAGTCTCCTGCTCCTGGTATTATTTCGAGACGTTCCGTATACGAGCCCCTTCAAACAGGACTTATTGCTATTGATTCGATGATCCCTATAGGGCGCGGTCAGCGGGAATTGATTATTGGGGACAGACAGACCGGTAAAACAGCAGTAGCCACGGATACGATTCTCAATCAACAAGGGCAAAATAATCTTGCTCCACCGGTGGTAGTCACGGTGGAAGAGAAGAAACGGAAAAAACAGAGGCTGCTGCTGCTGCTGCTTCGCTCCAAGGAGGAAGAGAGAAAGGAACAGTCTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAGATCCGGTTTCTTTCACAGAAGAAGAAGAGGCAGAGAATAGAAAGAAGCACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_C ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

222

Amino Acids

24.26

Weight (kDa)

9.86

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 21 - 58 5.5e-08 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 115 - 181 2.2e-11 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 381
AciI CCGC 2 cut(s) 381, 388
AclWI GGATC 3 cut(s) 181, 361, 604
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 91, 258
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 245, 299
AgeI ACCGGT 2 cut(s) 416, 481
AgsI TTSAA 3 cut(s) 65, 338, 587
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 294, 307
Alw44I GTGCAC 1 cut(s) 12
AlwI GGATC 3 cut(s) 181, 361, 604
AlwNI CAGNNNCTG 2 cut(s) 269, 526
AoxI GGCC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 12
ApeKI GCWGC 5 cut(s) 526, 529, 532, 535, 538
ApoI RAATTY 2 cut(s) 91, 258
AseI ATTAAT 1 cut(s) 122
AsiGI ACCGGT 2 cut(s) 416, 481
AspLEI GCGC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 140
AsuII TTCGAA 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 5 cut(s) 513, 516, 519, 522, 525
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 300
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 294, 307
BfmI CTRYAG 1 cut(s) 372
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 5 cut(s) 527, 530, 533, 536, 539
BlsI GCNGC 5 cut(s) 528, 531, 534, 537, 540
Bme1390I CCNGG 2 cut(s) 251, 300
BmrFI CCNGG 2 cut(s) 251, 300
BmrI ACTGGG 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 567
Bpu14I TTCGAA 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 250, 435, 549
BsaWI WCCGGW 3 cut(s) 416, 481, 612
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 299
Bse118I RCCGGY 2 cut(s) 416, 481
Bse1I ACTGG 2 cut(s) 191, 234
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 250, 435, 549
BseLI CCNNNNNNNGG 2 cut(s) 245, 299
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 191, 234
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 5 cut(s) 513, 516, 519, 522, 525
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 1 cut(s) 249
BshTI ACCGGT 2 cut(s) 416, 481
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 4 cut(s) 250, 417, 482, 613
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 245, 299
BsmAI GTCTC 2 cut(s) 294, 307
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 1 cut(s) 249
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 16, 333
Bsp143I GATC 3 cut(s) 186, 366, 609
BspACI CCGC 2 cut(s) 381, 388
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 381
BspPI GGATC 3 cut(s) 181, 361, 604
BspT104I TTCGAA 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 2 cut(s) 416, 481
BsrI ACTGG 2 cut(s) 191, 234
BssAI RCCGGY 2 cut(s) 416, 481
BssECI CCNNGG 3 cut(s) 250, 435, 549
BssMI GATC 3 cut(s) 186, 366, 609
BssNAI GTATAC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 549
Bst1107I GTATAC 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 4 cut(s) 35, 134, 496, 573
Bst6I CTCTTC 3 cut(s) 495, 552, 629
BstBI TTCGAA 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 183, 579
BstDSI CCRYGG 1 cut(s) 435
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 3 cut(s) 189, 369, 612
BstMAI GTCTC 2 cut(s) 294, 307
BstMBI GATC 3 cut(s) 186, 366, 609
BstMWI GCNNNNNNNGC 4 cut(s) 385, 532, 535, 538
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 249, 298
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 16
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 5 cut(s) 513, 516, 519, 522, 525
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 186, 609
BstYI RGATCY 2 cut(s) 186, 609
BstZ17I GTATAC 1 cut(s) 325
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 227
CaiI CAGNNNCTG 2 cut(s) 269, 526
CfoI GCGC 1 cut(s) 381
Cfr10I RCCGGY 2 cut(s) 416, 481
Csp6I GTAC 1 cut(s) 72
CspAI ACCGGT 2 cut(s) 416, 481
CviJI RGCY 7 cut(s) 233, 249, 266, 331, 434, 526, 603
CviKI_1 RGCY 7 cut(s) 233, 249, 266, 331, 434, 526, 603
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 2 cut(s) 183, 579
DpnI GATC 3 cut(s) 188, 368, 611
DpnII GATC 3 cut(s) 186, 366, 609
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 3 cut(s) 495, 552, 629
EarI CTCTTC 3 cut(s) 495, 552, 629
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 549
Esp3I CGTCTC 1 cut(s) 307
FaiI YATR 3 cut(s) 23, 325, 374
FaqI GGGAC 1 cut(s) 419
FauI CCCGC 1 cut(s) 381
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 5 cut(s) 527, 530, 533, 536, 539
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 5 cut(s) 527, 530, 533, 536, 539
GlaI GCGC 1 cut(s) 380
GluI GCNGC 5 cut(s) 527, 530, 533, 536, 539
HaeIII GGCC 1 cut(s) 249
HapII CCGG 4 cut(s) 250, 417, 482, 613
HhaI GCGC 1 cut(s) 381
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HinfI GANTC 5 cut(s) 98, 272, 287, 359, 445
HpaII CCGG 4 cut(s) 250, 417, 482, 613
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 14, 31, 325
Hpy188I TCNGA 4 cut(s) 90, 186, 271, 665
Hpy188III TCNNGA 1 cut(s) 312
Hpy8I GTNNAC 3 cut(s) 14, 31, 325
HpyAV CCTTC 2 cut(s) 62, 344
HpyCH4III ACNGT 4 cut(s) 35, 134, 496, 573
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 14, 227
HpyF10VI GCNNNNNNNGC 4 cut(s) 385, 532, 535, 538
HpyF3I CTNAG 2 cut(s) 183, 579
HpySE526I ACGT 1 cut(s) 316
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 186, 366, 609
LmnI GCTCC 4 cut(s) 301, 481, 551, 597
Lsp1109I GCAGC 5 cut(s) 513, 516, 519, 522, 525
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 2 cut(s) 128, 490
MalI GATC 3 cut(s) 188, 368, 611
MboI GATC 3 cut(s) 186, 366, 609
MboII GAAGA 9 cut(s) 77, 186, 512, 517, 567, 569, 640, 643, 646
MflI RGATCY 2 cut(s) 186, 609
MhlI GDGCHC 2 cut(s) 16, 333
MluCI AATT 6 cut(s) 91, 177, 258, 282, 392, 587
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 29, 36
MnlI CCTC 6 cut(s) 142, 193, 277, 516, 547, 630
MseI TTAA 2 cut(s) 122, 281
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 4 cut(s) 250, 417, 482, 613
MspR9I CCNGG 2 cut(s) 251, 300
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 4 cut(s) 385, 532, 535, 538
NciI CCSGG 1 cut(s) 251
NdeII GATC 3 cut(s) 186, 366, 609
NmuCI GTSAC 2 cut(s) 128, 490
NspV TTCGAA 1 cut(s) 38
PfeI GAWTC 4 cut(s) 98, 272, 359, 445
PinAI ACCGGT 2 cut(s) 416, 481
PkrI GCNGC 5 cut(s) 528, 531, 534, 537, 540
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PshBI ATTAAT 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PstNI CAGNNNCTG 2 cut(s) 269, 526
PsuI RGATCY 2 cut(s) 186, 609
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 122, 281
SatI GCNGC 5 cut(s) 527, 530, 533, 536, 539
Sau3AI GATC 3 cut(s) 186, 366, 609
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 251, 300
SduI GDGCHC 2 cut(s) 16, 333
SetI ASST 5 cut(s) 73, 214, 241, 319, 585
SfcI CTRYAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 38
SgrAI CRCCGGYG 1 cut(s) 481
Sse9I AATT 6 cut(s) 91, 177, 258, 282, 392, 587
SsiI CCGC 2 cut(s) 381, 388
StyD4I CCNGG 2 cut(s) 249, 298
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 4 cut(s) 35, 134, 496, 573
TaiI ACGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 38, 311, 362
TasI AATT 6 cut(s) 91, 177, 258, 282, 392, 587
TfiI GAWTC 4 cut(s) 98, 272, 359, 445
Tru1I TTAA 2 cut(s) 122, 281
Tru9I TTAA 2 cut(s) 122, 281
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 2 cut(s) 128, 490
TseI GCWGC 5 cut(s) 526, 529, 532, 535, 538
Tsp45I GTSAC 2 cut(s) 128, 490
TspDTI ATGAA 2 cut(s) 10, 17
TspGWI ACGGA 3 cut(s) 310, 452, 526
TspRI CASTG 1 cut(s) 234
VneI GTGCAC 1 cut(s) 12
VspI ATTAAT 1 cut(s) 122
XapI RAATTY 2 cut(s) 91, 258
XmiI GTMKAC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.