Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009873

Physical Location & Seq

Genomic Coordinates Reverse (-)

35367306 .. 35368132

Gene Structure 827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1271600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTGATAGTTTGATGATACAAGAGGGGAGTTCTGCTTTTTTAGGTCATGTTATCAATGCACTGGCTAAACCTATTGATGGTCGGGGTGAAATTTCATCTTTTGAATCTCAGTTAATTGTGTATCCCGCTCCTAGTATTATTTTAGGACATTCCGTATATGAGCCTTTTCAAACAAGACTTATTGTTATTGATTCAATGATTCCTATAGGGCGTGGTCAGCGAGAATTAATTATTATGGACAAACAGACCTATAAAACAGTAGTCACCACAGATACTATTCTCAATCACCAAAGGAAAAATGTAATATGCGTTTATGTAGTTATTGGTCTAAAAGCATCTTCTGTGGCTCAGGTGGTGACTGCTTTACAGGAAATGGGAACAATGGAATACACTATTGTGCTGTATCGACAAATGTCTCTTCTATTACGAATACCACTGGGCCGCGAAGCTTATCTAGGAGATGTTTTTTATTTACCTTCATGCGTTTTGGAAAGAGCCACTAAATCAAGTTCTCGTTTAGGTAAAGGAAGTATAACTGTTGTACCAATAGTTGAGACCCAATTAGGAAATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGACAAATATTCTTATATATATTATATTTAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_C ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

217

Amino Acids

23.76

Weight (kDa)

6.83

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	63 - 135	5.4e-16	ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab	PF00006	136 - 210	2.3e-18	ATP synthase alpha/beta family, nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00120
malus_domestica	MD16G1271600.v1.1
pyrus_communis	pycom12397g00030 pycom12397g00350
rosa_chinensis	RchiOBHm_CPg0502461
rosa_laevigata	RLG00000000010 RLG00000000051 RLG00000000091 RLG00000000171 RLG00000000236 RLG00000000251 RLG00000000279 RLG00000000309 RLG00000023688
rosa_multiflora	Rmu_sc0002735.1_g000002 Rmu_sc0002735.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119120
rosa_rugosa	Rorug02G0491100 Rorug02G0491200 Rorug03G0216800 RorugMtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	131
AccII	CGCG	1 cut(s)	447
AciI	CCGC	2 cut(s)	129, 445
AcsI	RAATTY	1 cut(s)	93
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	107, 173, 198
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	2 cut(s)	452, 581
AluI	AGCT	2 cut(s)	452, 581
Alw26I	GTCTC	2 cut(s)	423, 551
AoxI	GGCC	1 cut(s)	442
ApoI	RAATTY	1 cut(s)	93
AseI	ATTAAT	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	5 cut(s)	17, 101, 259, 281, 370
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BccI	CCATC	2 cut(s)	74, 608
BciVI	GTATCC	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	423, 551
BfaI	CTAG	2 cut(s)	135, 458
BfmI	CTRYAG	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	347
BmuI	ACTGGG	1 cut(s)	449
BoxI	GACNNNNGTC	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	69, 444
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	125, 365
BseNI	ACTGG	2 cut(s)	69, 444
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	2 cut(s)	423, 551
BsnI	GGCC	1 cut(s)	444
Bso31I	GGTCTC	1 cut(s)	551
BspACI	CCGC	2 cut(s)	129, 445
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	2 cut(s)	124, 364
BspFNI	CGCG	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	69, 444
Bst4CI	ACNGT	2 cut(s)	262, 541
Bst6I	CTCTTC	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	111, 351
BstFNI	CGCG	1 cut(s)	447
BstMAI	GTCTC	2 cut(s)	423, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	62, 437
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	2 cut(s)	50, 483
CviJI	RGCY	7 cut(s)	68, 166, 350, 444, 452, 500, 581
CviKI_1	RGCY	7 cut(s)	68, 166, 350, 444, 452, 500, 581
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	2 cut(s)	111, 351
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	551
FaeI	CATG	2 cut(s)	53, 486
FatI	CATG	2 cut(s)	49, 482
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	445
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	2 cut(s)	135, 458
GluI	GCNGC	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	53, 486
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	3 cut(s)	107, 194, 202
HphI	GGTGA	5 cut(s)	17, 101, 259, 281, 370
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	2 cut(s)	262, 541
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	111, 351
Hsp92II	CATG	2 cut(s)	53, 486
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	4 cut(s)	50, 338, 356, 425
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	2 cut(s)	135, 458
MaeIII	GTNAC	2 cut(s)	265, 358
MbiI	CCGCTC	1 cut(s)	131
MboII	GAAGA	2 cut(s)	333, 413
MluCI	AATT	6 cut(s)	93, 117, 227, 231, 563, 600
MnlI	CCTC	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	574
MseI	TTAA	2 cut(s)	116, 230
MslI	CAYNNNNRTG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	53, 486
NmuCI	GTSAC	2 cut(s)	265, 358
OliI	CACNNNNGTG	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	107, 194, 202
PkrI	GCNGC	1 cut(s)	446
PshAI	GACNNNNGTC	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	442
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	116, 230
SatI	GCNGC	1 cut(s)	445
Sau96I	GGNCC	1 cut(s)	442
SetI	ASST	8 cut(s)	49, 76, 254, 357, 454, 481, 526, 583
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	6 cut(s)	93, 117, 227, 231, 563, 600
SsiI	CCGC	2 cut(s)	129, 445
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	2 cut(s)	135, 458
TaaI	ACNGT	2 cut(s)	262, 541
TaqI	TCGA	1 cut(s)	409
TasI	AATT	6 cut(s)	93, 117, 227, 231, 563, 600
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	3 cut(s)	107, 194, 202
Tru1I	TTAA	2 cut(s)	116, 230
Tru9I	TTAA	2 cut(s)	116, 230
TscAI	CASTG	2 cut(s)	69, 444
TseFI	GTSAC	2 cut(s)	265, 358
Tsp45I	GTSAC	2 cut(s)	265, 358
TspDTI	ATGAA	2 cut(s)	87, 471
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	2 cut(s)	69, 444
VspI	ATTAAT	1 cut(s)	230
XapI	RAATTY	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	574
XspI	CTAG	2 cut(s)	135, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.