ATCG00780

Belongs to the universal ribosomal protein uL14 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0017165
Physical Location & Seq
Reverse (-)
80696 .. 81064
369 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG00780.1

Sequence Viewer

Length: 369 bp
ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTAGAGAATTGATGTGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAATGGGACGATAATACGATATGATGACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGGGCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGTTTCATTAGCTCCTGAGGTATTATAA

Protein Analysis

122

Amino Acids

13.58

Weight (kDa)

9.38

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 1 - 122 1.7e-50 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017165)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00780
fragaria_vesca FvH4_c3g00180
malus_domestica MD08G1154900.v1.1
prunus_persica Prupe.6G016800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0118581 RchiOBHm_CPg0501861
rosa_laevigata RLG00000000056 RLG00000000072 RLG00000000178 RLG00000000218 RLG00000037102
rosa_rugosa RorugMtG0002800.1
rosa_wichuraiana Rw7G013530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 367
AciI CCGC 2 cut(s) 42, 249
AclWI GGATC 1 cut(s) 298
AfaI GTAC 2 cut(s) 189, 193
AgsI TTSAA 2 cut(s) 8, 25
AluBI AGCT 3 cut(s) 80, 179, 353
AluI AGCT 3 cut(s) 80, 179, 353
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 288
AxyI CCTNAGG 1 cut(s) 357
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 3 cut(s) 48, 81, 155
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 308
Bse21I CCTNAGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 288
Bsp119I TTCGAA 1 cut(s) 67
Bsp143I GATC 3 cut(s) 161, 262, 303
BspACI CCGC 2 cut(s) 42, 249
BspCNI CTCAG 1 cut(s) 349
BspPI GGATC 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 3 cut(s) 161, 262, 303
BstBAI YACGTR 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 308
BstKTI GATC 3 cut(s) 164, 265, 306
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 3 cut(s) 161, 262, 303
BstSNI TACGTA 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 308
Csp6I GTAC 2 cut(s) 188, 192
CspCI CAANNNNNGTGG 2 cut(s) 297, 332
CviJI RGCY 4 cut(s) 47, 80, 179, 353
CviKI_1 RGCY 4 cut(s) 47, 80, 179, 353
CviQI GTAC 2 cut(s) 188, 192
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 163, 264, 305
DpnII GATC 3 cut(s) 161, 262, 303
Eco105I TACGTA 1 cut(s) 191
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 288
FaiI YATR 4 cut(s) 96, 102, 237, 367
FaqI GGGAC 1 cut(s) 235
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 3 cut(s) 48, 81, 155
GluI GCNGC 1 cut(s) 249
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 155, 266, 356
HpyAV CCTTC 1 cut(s) 263
HpyCH4IV ACGT 3 cut(s) 111, 190, 211
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 3 cut(s) 111, 190, 211
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 161, 262, 303
LmnI GCTCC 2 cut(s) 77, 358
MaeI CTAG 3 cut(s) 48, 81, 155
MaeII ACGT 3 cut(s) 111, 190, 211
MaeIII GTNAC 2 cut(s) 107, 212
MalI GATC 3 cut(s) 163, 264, 305
MboI GATC 3 cut(s) 161, 262, 303
MluCI AATT 4 cut(s) 53, 183, 314, 323
MnlI CCTC 2 cut(s) 162, 352
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 42
NdeII GATC 3 cut(s) 161, 262, 303
NmuCI GTSAC 1 cut(s) 107
NspV TTCGAA 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 191
PsiI TTATAA 1 cut(s) 367
PspXI VCTCGAGB 1 cut(s) 288
RsaI GTAC 2 cut(s) 189, 193
RsaNI GTAC 2 cut(s) 188, 192
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 3 cut(s) 161, 262, 303
SetI ASST 8 cut(s) 20, 82, 114, 181, 193, 214, 355, 363
Sfr274I CTCGAG 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SnaBI TACGTA 1 cut(s) 191
Sse9I AATT 4 cut(s) 53, 183, 314, 323
SsiI CCGC 2 cut(s) 42, 249
SspMI CTAG 3 cut(s) 48, 81, 155
TaiI ACGT 3 cut(s) 114, 193, 214
TaqI TCGA 2 cut(s) 67, 289
TasI AATT 4 cut(s) 53, 183, 314, 323
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 336
XbaI TCTAGA 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 288
XspI CTAG 3 cut(s) 48, 81, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.