Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017165

Physical Location & Seq

Genomic Coordinates Forward (+)

30728513 .. 30728689

Gene Structure 177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49135

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGATTCAACCTCAAACCCATTTGAACGTAGCGGATAACAGCGGGGCCCAAGAATTGATGTGTATTCGAATCATAGGAGCTAGCAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAAGAAGCAGTACCAAATACACCTCTCGAAAGATCAGAAGTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0015934 GO:0019843 GO:0031974 GO:0031976 GO:0031984 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0070180 GO:0097159 GO:0098798 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

58

Amino Acids

6.35

Weight (kDa)

6.01

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	1 - 57	9.8e-19	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00780
fragaria_vesca	FvH4_c3g00180
malus_domestica	MD08G1154900.v1.1
prunus_persica	Prupe.6G016800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118581 RchiOBHm_CPg0501861
rosa_laevigata	RLG00000000056 RLG00000000072 RLG00000000178 RLG00000000218 RLG00000037102
rosa_rugosa	RorugMtG0002800.1
rosa_wichuraiana	Rw7G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 42
AfaI	GTAC	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	8, 25
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
AoxI	GGCC	1 cut(s)	45
ApaI	GGGCCC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	45, 46
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	45, 46
BmiI	GGNNCC	2 cut(s)	46, 47
BmtI	GCTAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	67
Bsp120I	GGGCCC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	161, 171
BspACI	CCGC	2 cut(s)	32, 42
BspANI	GGCC	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	46, 47
BspOI	GCTAGC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	67
BssMI	GATC	2 cut(s)	161, 171
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	164, 174
BstMBI	GATC	2 cut(s)	161, 171
BstSLI	GKGCMC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	45, 46
Csp6I	GTAC	1 cut(s)	140
CviJI	RGCY	2 cut(s)	47, 80
CviKI_1	RGCY	2 cut(s)	47, 80
CviQI	GTAC	1 cut(s)	140
DpnI	GATC	2 cut(s)	163, 173
DpnII	GATC	2 cut(s)	161, 171
Eco24I	GRGCYC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	49
FaiI	YATR	3 cut(s)	74, 96, 102
FauI	CCCGC	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	49
FspBI	CTAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	47
HinfI	GANTC	2 cut(s)	4, 69
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	166, 176
Hpy188III	TCNNGA	1 cut(s)	155
Hpy99I	CGWCG	1 cut(s)	93
HpyCH4IV	ACGT	2 cut(s)	27, 111
HpySE526I	ACGT	2 cut(s)	27, 111
Kzo9I	GATC	2 cut(s)	161, 171
LmnI	GCTCC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	27, 111
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	163, 173
MboI	GATC	2 cut(s)	161, 171
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	2 cut(s)	21, 162
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	42
NdeII	GATC	2 cut(s)	161, 171
NheI	GCTAGC	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	46, 47
NmuCI	GTSAC	1 cut(s)	107
NspV	TTCGAA	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	4, 69
PspN4I	GGNNCC	2 cut(s)	46, 47
PspOMI	GGGCCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	45, 46
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	161, 171
Sau96I	GGNCC	2 cut(s)	45, 46
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	5 cut(s)	13, 30, 82, 114, 154
SfuI	TTCGAA	1 cut(s)	67
SgeI	CNNG	4 cut(s)	55, 62, 93, 167
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	32, 42
SspMI	CTAG	1 cut(s)	81
TaiI	ACGT	2 cut(s)	30, 114
TaqI	TCGA	3 cut(s)	67, 88, 156
TasI	AATT	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	4, 69
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.