Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0017165

Physical Location & Seq

Genomic Coordinates Reverse (-)

17195342 .. 17196172

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1154900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTGTATTCAAATCATAGGAGCTAGTAATCGACGATATGCTCATATTGGTGATATTATTGTTGATGTAGTCAAGGAAGTAGTACCAAATAGACCTCTAGAAAGATCAGAAGTGGTTCGAGCTGTCATTCTACGTACTTGTAAAGAACTCAAACACGACAACAGTATGATAATACGATATGATGACAAAGCTACGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACCCGAATTTTCAGCGCGATCGCCCGGGAATTAAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACTTGAAGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0015934 GO:0019843 GO:0031974 GO:0031976 GO:0031984 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0070180 GO:0097159 GO:0098798 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

9.1

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	1 - 103	2.2e-32	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00780
fragaria_vesca	FvH4_c3g00180
malus_domestica	MD08G1154900.v1.1
prunus_persica	Prupe.6G016800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118581 RchiOBHm_CPg0501861
rosa_laevigata	RLG00000000056 RLG00000000072 RLG00000000178 RLG00000000218 RLG00000037102
rosa_rugosa	RorugMtG0002800.1
rosa_wichuraiana	Rw7G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	234, 271
AfaI	GTAC	2 cut(s)	84, 136
AgsI	TTSAA	2 cut(s)	11, 302
AluBI	AGCT	3 cut(s)	23, 122, 191
AluI	AGCT	3 cut(s)	23, 122, 191
Ama87I	CYCGRG	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	234, 271
AsiSI	GCGATCGC	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	253, 254
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	253, 254
BfaI	CTAG	2 cut(s)	24, 98
Bme1390I	CCNGG	2 cut(s)	253, 254
BmeT110I	CYCGRG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	253, 254
BpuMI	CCSGG	2 cut(s)	253, 254
BsaAI	YACGTR	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	104, 205, 246
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	104, 205, 246
Bst4CI	ACNGT	3 cut(s)	164, 196, 267
BstBAI	YACGTR	1 cut(s)	134
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	107, 208, 249
BstMBI	GATC	3 cut(s)	104, 205, 246
BstMCI	CGRYCG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	251, 252
BstSNI	TACGTA	1 cut(s)	134
BstUI	CGCG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	245
Cfr9I	CCCGGG	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	83, 135
CviJI	RGCY	3 cut(s)	23, 122, 191
CviKI_1	RGCY	3 cut(s)	23, 122, 191
CviQI	GTAC	2 cut(s)	83, 135
DpnI	GATC	3 cut(s)	106, 207, 248
DpnII	GATC	3 cut(s)	104, 205, 246
Eco105I	TACGTA	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	252
FaiI	YATR	6 cut(s)	17, 39, 45, 167, 180, 310
FbaI	TGATCA	1 cut(s)	205
FspBI	CTAG	2 cut(s)	24, 98
GlaI	GCGC	1 cut(s)	244
HapII	CCGG	1 cut(s)	253
HhaI	GCGC	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	98, 209
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	3 cut(s)	164, 196, 267
HpyCH4IV	ACGT	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	133
HspAI	GCGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	104, 205, 246
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	1 cut(s)	266
MaeI	CTAG	2 cut(s)	24, 98
MaeII	ACGT	1 cut(s)	133
MalI	GATC	3 cut(s)	106, 207, 248
MboI	GATC	3 cut(s)	104, 205, 246
MluCI	AATT	3 cut(s)	234, 257, 271
MnlI	CCTC	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	260, 269
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	253, 254
MvnI	CGCG	1 cut(s)	245
NciI	CCSGG	2 cut(s)	253, 254
NdeII	GATC	3 cut(s)	104, 205, 246
NlaIV	GGNNCC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	114
Ple19I	CGATCG	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	229
PvuI	CGATCG	1 cut(s)	249
RgaI	GCGATCGC	1 cut(s)	249
RsaI	GTAC	2 cut(s)	84, 136
RsaNI	GTAC	2 cut(s)	83, 135
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	260, 269
Sau3AI	GATC	3 cut(s)	104, 205, 246
ScrFI	CCNGG	2 cut(s)	253, 254
SetI	ASST	5 cut(s)	25, 97, 124, 136, 193
SfaAI	GCGATCGC	1 cut(s)	249
SgfI	GCGATCGC	1 cut(s)	249
SmaI	CCCGGG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	48
SnaBI	TACGTA	1 cut(s)	134
Sse9I	AATT	3 cut(s)	234, 257, 271
SspMI	CTAG	2 cut(s)	24, 98
StyD4I	CCNGG	2 cut(s)	251, 252
TaaI	ACNGT	3 cut(s)	164, 196, 267
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	31, 118
TasI	AATT	3 cut(s)	234, 257, 271
Tru1I	TTAA	2 cut(s)	260, 269
Tru9I	TTAA	2 cut(s)	260, 269
TspDTI	ATGAA	1 cut(s)	279
TspMI	CCCGGG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	234, 271
XbaI	TCTAGA	1 cut(s)	97
XmaI	CCCGGG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	2 cut(s)	24, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.