RCHIOBHM_CPG0501861

Ribosomal protein L16p/L10e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Pt
OG0017165
Physical Location & Seq
Forward (+)
30543 .. 30940
398 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15678

Sequence Viewer

Length: 312 bp
ATGTGTATTCGAATCATAGGAGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAAGAAGCAGTACCAAATACACCTCTAGAAAGATCAGAAGTGATTCGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGCGACAACGGTATGATAATACGATATGATGACAATGCTGCAGTTGTTATTGATCAAGAAGGAAATCCAAAGGGAACCCGAATTTTTGGCGCGATCCCCCGGGAATTAAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAAGTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14 Ribosomal_L16

Protein Analysis

103

Amino Acids

11.51

Weight (kDa)

9.44

Isoelectric Point (pI)

28.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 1 - 103 3.7e-39 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017165)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00780
fragaria_vesca FvH4_c3g00180
malus_domestica MD08G1154900.v1.1
prunus_persica Prupe.6G016800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0118581 RchiOBHm_CPg0501861
rosa_laevigata RLG00000000056 RLG00000000072 RLG00000000178 RLG00000000218 RLG00000037102
rosa_rugosa RorugMtG0002800.1
rosa_wichuraiana Rw7G013530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 310
AccII CGCG 2 cut(s) 156, 245
AclWI GGATC 1 cut(s) 241
AcsI RAATTY 2 cut(s) 234, 271
AfaI GTAC 3 cut(s) 84, 132, 136
AluBI AGCT 2 cut(s) 23, 122
AluI AGCT 2 cut(s) 23, 122
AlwI GGATC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 234, 271
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 245
AsuC2I CCSGG 2 cut(s) 253, 254
AsuHPI GGTGA 1 cut(s) 62
AsuII TTCGAA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 252
BbvI GCAGC 1 cut(s) 178
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 2 cut(s) 253, 254
BfaI CTAG 2 cut(s) 24, 98
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 253, 254
BmeT110I CYCGRG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 253, 254
Bpu14I TTCGAA 1 cut(s) 10
BpuMI CCSGG 2 cut(s) 253, 254
BsaAI YACGTR 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 251, 252
BseDI CCNNGG 2 cut(s) 251, 252
BseXI GCAGC 1 cut(s) 178
Bsh1236I CGCG 2 cut(s) 156, 245
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 252
Bsp119I TTCGAA 1 cut(s) 10
Bsp143I GATC 3 cut(s) 104, 205, 246
BspFNI CGCG 2 cut(s) 156, 245
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 241
BspT104I TTCGAA 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 251, 252
BssMI GATC 3 cut(s) 104, 205, 246
Bst4CI ACNGT 2 cut(s) 164, 267
BstBAI YACGTR 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 10
BstFNI CGCG 2 cut(s) 156, 245
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 3 cut(s) 107, 208, 249
BstMBI GATC 3 cut(s) 104, 205, 246
BstSCI CCNGG 2 cut(s) 251, 252
BstSFI CTRYAG 1 cut(s) 192
BstSNI TACGTA 1 cut(s) 134
BstUI CGCG 2 cut(s) 156, 245
BstV1I GCAGC 1 cut(s) 178
CfoI GCGC 1 cut(s) 245
Cfr9I CCCGGG 1 cut(s) 252
Csp6I GTAC 3 cut(s) 83, 131, 135
CviJI RGCY 2 cut(s) 23, 122
CviKI_1 RGCY 2 cut(s) 23, 122
CviQI GTAC 3 cut(s) 83, 131, 135
DpnI GATC 3 cut(s) 106, 207, 248
DpnII GATC 3 cut(s) 104, 205, 246
Eco105I TACGTA 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 252
FaiI YATR 6 cut(s) 17, 39, 45, 167, 180, 310
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 24, 98
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 192
HapII CCGG 1 cut(s) 253
HhaI GCGC 1 cut(s) 245
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 12, 115
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 98, 209
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 164, 267
HpyCH4IV ACGT 2 cut(s) 54, 133
HpyCH4V TGCA 1 cut(s) 194
HpySE526I ACGT 2 cut(s) 54, 133
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 104, 205, 246
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 1 cut(s) 266
Lsp1109I GCAGC 1 cut(s) 178
MaeI CTAG 2 cut(s) 24, 98
MaeII ACGT 2 cut(s) 54, 133
MaeIII GTNAC 1 cut(s) 50
MalI GATC 3 cut(s) 106, 207, 248
MboI GATC 3 cut(s) 104, 205, 246
MluCI AATT 4 cut(s) 126, 234, 257, 271
MnlI CCTC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 260, 269
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 253, 254
MvnI CGCG 2 cut(s) 156, 245
NciI CCSGG 2 cut(s) 253, 254
NdeII GATC 3 cut(s) 104, 205, 246
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 50
NspV TTCGAA 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 12, 115
PkrI GCNGC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 134
PsiI TTATAA 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 229
PstI CTGCAG 1 cut(s) 196
RsaI GTAC 3 cut(s) 84, 132, 136
RsaNI GTAC 3 cut(s) 83, 131, 135
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 2 cut(s) 260, 269
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 3 cut(s) 104, 205, 246
ScrFI CCNGG 2 cut(s) 253, 254
SetI ASST 6 cut(s) 25, 57, 97, 124, 136, 301
SfcI CTRYAG 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 10
SmaI CCCGGG 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 48
SnaBI TACGTA 1 cut(s) 134
Sse9I AATT 4 cut(s) 126, 234, 257, 271
SspMI CTAG 2 cut(s) 24, 98
StyD4I CCNGG 2 cut(s) 251, 252
TaaI ACNGT 2 cut(s) 164, 267
TaiI ACGT 2 cut(s) 57, 136
TaqI TCGA 3 cut(s) 10, 31, 118
TasI AATT 4 cut(s) 126, 234, 257, 271
TfiI GAWTC 2 cut(s) 12, 115
Tru1I TTAA 2 cut(s) 260, 269
Tru9I TTAA 2 cut(s) 260, 269
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 279
TspMI CCCGGG 1 cut(s) 252
XapI RAATTY 2 cut(s) 234, 271
XbaI TCTAGA 1 cut(s) 97
XmaI CCCGGG 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 24, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.