Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017165

Physical Location & Seq

Genomic Coordinates Forward (+)

88442919 .. 88443287

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATTCAACCTCAAACCCATTTGAACGTAGCGGATAACAGCGGGGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAAGAAGCAGTACCAAATACACCTCTAGAAAGATCAGAAGTGATCCGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGCGACAACGGTATGATAATACGATATGATGACAATGCTGCAGTTGTTATTGATCAAGAAGGAAATCCAAAGGGAACCCGAATTTTTGGCGCGATCCCCCGGGAATTAAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAAGTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0009507 GO:0009536 GO:0015934 GO:0019843 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070180 GO:0097159 GO:0098798 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

9.13

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	1 - 122	2.8e-50	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00780
fragaria_vesca	FvH4_c3g00180
malus_domestica	MD08G1154900.v1.1
prunus_persica	Prupe.6G016800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118581 RchiOBHm_CPg0501861
rosa_laevigata	RLG00000000056 RLG00000000072 RLG00000000178 RLG00000000218 RLG00000037102
rosa_rugosa	RorugMtG0002800.1
rosa_wichuraiana	Rw7G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	367
AccII	CGCG	2 cut(s)	213, 302
AciI	CCGC	2 cut(s)	32, 42
AclWI	GGATC	2 cut(s)	166, 298
AcsI	RAATTY	2 cut(s)	291, 328
AfaI	GTAC	3 cut(s)	141, 189, 193
AgsI	TTSAA	2 cut(s)	8, 25
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AlwI	GGATC	2 cut(s)	166, 298
Ama87I	CYCGRG	2 cut(s)	48, 309
AoxI	GGCC	1 cut(s)	45
ApaI	GGGCCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	291, 328
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	45, 46
AsuC2I	CCSGG	2 cut(s)	310, 311
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	67
AvaI	CYCGRG	2 cut(s)	48, 309
BaeGI	GKGCMC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	2 cut(s)	310, 311
BfaI	CTAG	2 cut(s)	81, 155
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	310, 311
BmeT110I	CYCGRG	2 cut(s)	48, 309
BmgT120I	GGNCC	2 cut(s)	45, 46
BmiI	GGNNCC	3 cut(s)	46, 47, 286
BmrFI	CCNGG	2 cut(s)	310, 311
Bpu14I	TTCGAA	1 cut(s)	67
BpuMI	CCSGG	2 cut(s)	310, 311
BsaAI	YACGTR	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	308, 309
BseDI	CCNNGG	2 cut(s)	308, 309
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	213, 302
BshFI	GGCC	1 cut(s)	47
BsiHKCI	CYCGRG	2 cut(s)	48, 309
BsiSI	CCGG	1 cut(s)	310
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	2 cut(s)	48, 309
Bsp119I	TTCGAA	1 cut(s)	67
Bsp120I	GGGCCC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	161, 171, 262, 303
BspACI	CCGC	2 cut(s)	32, 42
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	2 cut(s)	213, 302
BspLI	GGNNCC	3 cut(s)	46, 47, 286
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	2 cut(s)	166, 298
BspT104I	TTCGAA	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	308, 309
BssMI	GATC	4 cut(s)	161, 171, 262, 303
Bst4CI	ACNGT	2 cut(s)	221, 324
BstBAI	YACGTR	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	213, 302
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	164, 174, 265, 306
BstMBI	GATC	4 cut(s)	161, 171, 262, 303
BstSCI	CCNGG	2 cut(s)	308, 309
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	49
BstSNI	TACGTA	1 cut(s)	191
BstUI	CGCG	2 cut(s)	213, 302
BstV1I	GCAGC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	45, 46
Cfr9I	CCCGGG	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	140, 188, 192
CviJI	RGCY	3 cut(s)	47, 80, 179
CviKI_1	RGCY	3 cut(s)	47, 80, 179
CviQI	GTAC	3 cut(s)	140, 188, 192
DpnI	GATC	4 cut(s)	163, 173, 264, 305
DpnII	GATC	4 cut(s)	161, 171, 262, 303
Eco105I	TACGTA	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	49
Eco88I	CYCGRG	2 cut(s)	48, 309
EcoO109I	RGGNCCY	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	49
FaiI	YATR	6 cut(s)	74, 96, 102, 224, 237, 367
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	81, 155
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	4, 69
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	166, 176
Hpy188III	TCNNGA	2 cut(s)	155, 266
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	221, 324
HpyCH4IV	ACGT	3 cut(s)	27, 111, 190
HpyCH4V	TGCA	1 cut(s)	251
HpySE526I	ACGT	3 cut(s)	27, 111, 190
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	161, 171, 262, 303
LpnPI	CCDG	1 cut(s)	323
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	81, 155
MaeII	ACGT	3 cut(s)	27, 111, 190
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	4 cut(s)	163, 173, 264, 305
MboI	GATC	4 cut(s)	161, 171, 262, 303
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	5 cut(s)	53, 183, 291, 314, 328
MnlI	CCTC	2 cut(s)	21, 162
MseI	TTAA	2 cut(s)	317, 326
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	310, 311
MvnI	CGCG	2 cut(s)	213, 302
NciI	CCSGG	2 cut(s)	310, 311
NdeII	GATC	4 cut(s)	161, 171, 262, 303
NlaIV	GGNNCC	3 cut(s)	46, 47, 286
NmuCI	GTSAC	1 cut(s)	107
NspV	TTCGAA	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	4, 69
PkrI	GCNGC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	191
PsiI	TTATAA	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	46, 47, 286
PspOMI	GGGCCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	45, 46
PstI	CTGCAG	1 cut(s)	253
RsaI	GTAC	3 cut(s)	141, 189, 193
RsaNI	GTAC	3 cut(s)	140, 188, 192
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	317, 326
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	4 cut(s)	161, 171, 262, 303
Sau96I	GGNCC	2 cut(s)	45, 46
ScrFI	CCNGG	2 cut(s)	310, 311
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	7 cut(s)	13, 30, 114, 154, 181, 193, 358
SfcI	CTRYAG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	105
SnaBI	TACGTA	1 cut(s)	191
Sse9I	AATT	5 cut(s)	53, 183, 291, 314, 328
SsiI	CCGC	2 cut(s)	32, 42
SspMI	CTAG	2 cut(s)	81, 155
StyD4I	CCNGG	2 cut(s)	308, 309
TaaI	ACNGT	2 cut(s)	221, 324
TaiI	ACGT	3 cut(s)	30, 114, 193
TaqI	TCGA	2 cut(s)	67, 88
TasI	AATT	5 cut(s)	53, 183, 291, 314, 328
TfiI	GAWTC	2 cut(s)	4, 69
Tru1I	TTAA	2 cut(s)	317, 326
Tru9I	TTAA	2 cut(s)	317, 326
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	336
TspMI	CCCGGG	1 cut(s)	309
XapI	RAATTY	2 cut(s)	291, 328
XbaI	TCTAGA	1 cut(s)	154
XmaI	CCCGGG	1 cut(s)	309
XspI	CTAG	2 cut(s)	81, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.