ATMG00090

Ribosomal protein S3, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0018761
Physical Location & Seq
Reverse (-)
25482 .. 28733
3252 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00090.1

Sequence Viewer

Length: 1671 bp
ATGGCACGAAAAGGAAATCCGATTTCGGTAAGACTTGGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTGAGTATTATTATGGTAAATTTGTGTATCAAGATGTCAATCTGAGATCTTATTTCGGTTCGATACGTCCACCTACGAGACTCACCTTCGGCTTTCGTCTCGGTAGGTGTATTATTCTACATTTTCCTAAAAGAACATTCATTCATTTCTTTCTTCCCCGTCGACCACGACGACTGAAACGACGTGAAAAAACTAGACCCGGAAAGGAGAAGGGCCGGTGGTGGACGACATTCGGGAAAGCCGGGCCGATCGAGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGGGGGCAAGGAAAAGAGTCGAGTCGATCAGGCTCGACGACCGAAAAAAGCAAAACGAAATCCGGGGTTGGCCGAAAAAAAAACAACGCTATGGATACCATGACCGATTACCCTCGATAAAGAAGAATCTTTCTAAATCACTTCGGATCAGCGGGGCCTTCAAGCATCCGAAATACGCCGGGGTTGTAAATGACATAGCGTTCCTGATAGAAAATGACGACTCCTTCAAAAAAACGAAGTTATTCAAGTTATTTTTCCAAAATAAGTCCCGCTCCGACGGCCCGACGAGTTATCTACGGACCCTCCCTGCAGTGCGCCCCTCCTTGAATTTTTTGGTCATGCAATACTTTTTTAATACAAAGAACCAAATTAATTTCGACCCCGTCGTAGTTCTCAATCATTTCGTGGCACCGGGCGCCGCTGAACCATCTACGATGGGGAGAGCGAATGCACAGGGAAGAAGCTTACAGAAGAGAATACGTTCTCGTATCGCTTTTTTTGTAGAAAGCTCGACCAGCGAGAAAAAGTGTTTGGCCGAAGCCAAAAATAGGTTGACCCACTTCATTCGCTTGGCGAATGATCTTCGCTTCGCGGGAACAACTAAAACCACCATCTCGCTCTTTCCATTCTTCGGTGCTACCTTTTTCTTTCTAAGAGATGGGGTTGGGGTGTATAATAACCTTGATGCTCGGGAACAACTCCTCAATCAATTAAGGGTCAAATGTTGGAACCTCGTGGGTAAGGATAAGATAATGGAATTGATAGAGAAATTAAAAAACCTAGGTGGGATAGAAGAATTGATAAAGGTAATAGATATGATGATAGAGATCATACTGAGAAAGAGAGGAATTCCGTACAGGTACAACTCTTATTTTTACGAAGTCAAAAAAATGCGATCTTTCTTGTCTAATAGAACAAACACTAAGACCTTAATTGAGTCAGTCAAAATAAAATCTGTTTATCAAAGCGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAAGAACAAAAGAAGATCATTTCATTCCATTTTTGCTAAAATAGTGAAGGAGATTCCAAAAGGGGTGGAGGGAATCCGTATATGTTTTTCCGGTCGATTAAAAGACGCAGCAGAAAAAGCTCAAACTAAATGCTATAAGCATAGAAAAACTTCTCGTAATGTATTTAACCATAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATATAGTCAAAAAAAAGGGAGACGTGCTATATCCGAAACGTACGAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S3_C

Protein Analysis

556

Amino Acids

64.72

Weight (kDa)

10.43

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3_C PF00189 463 - 539 3.5e-14 Ribosomal protein S3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018761)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00090
pyrus_communis pycom461g00300
rosa_laevigata RLG00000000074
rosa_roxburghii Rroxscaffold_172G00445460 Rroxscaffold_1G00007820 Rroxscaffold_3G00250700 Rroxscaffold_7G00167100
rosa_samantha Rh1BG019100 Rh5AG095300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 784, 791
AccBSI CCGCTC 1 cut(s) 648
AccI GTMKAC 1 cut(s) 232
AccII CGCG 1 cut(s) 968
AciI CCGC 5 cut(s) 528, 646, 795, 968, 1571
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 2 cut(s) 446, 909
AcsI RAATTY 3 cut(s) 89, 703, 1224
AcuI CTGAAG 1 cut(s) 1400
AcyI GRCGYC 1 cut(s) 792
AfaI GTAC 3 cut(s) 1232, 1238, 1661
AfeI AGCGCT 1 cut(s) 1345
AfiI CCNNNNNNNGG 2 cut(s) 924, 1007
AgsI TTSAA 7 cut(s) 60, 336, 538, 604, 622, 703, 1376
AjiI CACGTC 2 cut(s) 254, 1643
AjuI GAANNNNNNNTTGG 2 cut(s) 890, 922
AluBI AGCT 3 cut(s) 840, 885, 1499
AluI AGCT 3 cut(s) 840, 885, 1499
Alw26I GTCTC 3 cut(s) 142, 173, 1633
AlwI GGATC 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 1065
Aor51HI AGCGCT 1 cut(s) 1345
AoxI GGCC 7 cut(s) 283, 314, 373, 446, 531, 655, 909
ApeKI GCWGC 1 cut(s) 1487
ApoI RAATTY 3 cut(s) 89, 703, 1224
AseI ATTAAT 1 cut(s) 747
Asp700I GAANNNNTTC 3 cut(s) 617, 856, 1528
AspA2I CCTAGG 1 cut(s) 1156
AspLEI GCGC 3 cut(s) 693, 794, 1346
AspS9I GGNCC 5 cut(s) 283, 314, 531, 656, 675
AsuC2I CCSGG 6 cut(s) 270, 313, 377, 440, 556, 789
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 1065
AvaII GGWCC 1 cut(s) 675
AvrII CCTAGG 1 cut(s) 1156
BanI GGYRCC 2 cut(s) 784, 791
BauI CACGAG 1 cut(s) 1109
BbsI GAAGAC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 1499
BccI CCATC 4 cut(s) 805, 811, 995, 1028
BceAI ACGGC 1 cut(s) 670
BciVI GTATCC 1 cut(s) 464
BcnI CCSGG 6 cut(s) 270, 313, 377, 440, 556, 789
BcoDI GTCTC 3 cut(s) 142, 173, 1633
BfaI CTAG 2 cut(s) 264, 1157
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 2 cut(s) 795, 1347
BfuI GTATCC 1 cut(s) 464
BglII AGATCT 1 cut(s) 116
BisI GCNGC 2 cut(s) 795, 1488
BlnI CCTAGG 1 cut(s) 1156
BlsI GCNGC 2 cut(s) 796, 1489
Bme1390I CCNGG 6 cut(s) 270, 313, 377, 440, 556, 789
Bme18I GGWCC 1 cut(s) 675
BmeT110I CYCGRG 1 cut(s) 1065
BmgBI CACGTC 2 cut(s) 254, 1643
BmgT120I GGNCC 5 cut(s) 283, 314, 531, 656, 675
BmiI GGNNCC 5 cut(s) 532, 677, 786, 793, 1106
BmrFI CCNGG 6 cut(s) 270, 313, 377, 440, 556, 789
BmsI GCATC 2 cut(s) 550, 1051
BpiI GAAGAC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 1344
BpuMI CCSGG 6 cut(s) 270, 313, 377, 440, 556, 789
Bsa29I ATCGAT 1 cut(s) 1557
BsaBI GATNNNNATC 2 cut(s) 108, 1202
BsaHI GRCGYC 1 cut(s) 792
BsaJI CCNNGG 4 cut(s) 376, 439, 555, 1156
BsaWI WCCGGW 1 cut(s) 1469
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 2 cut(s) 924, 1007
Bse118I RCCGGY 1 cut(s) 285
Bse8I GATNNNNATC 2 cut(s) 108, 1202
BseCI ATCGAT 1 cut(s) 1557
BseDI CCNNGG 4 cut(s) 376, 439, 555, 1156
BseGI GGATG 1 cut(s) 541
BseJI GATNNNNATC 2 cut(s) 108, 1202
BseLI CCNNNNNNNGG 2 cut(s) 924, 1007
BseMII CTCAG 3 cut(s) 104, 1202, 1611
BseRI GAGGAG 1 cut(s) 1067
BseXI GCAGC 1 cut(s) 1499
Bsh1236I CGCG 1 cut(s) 968
Bsh1285I CGRYCG 3 cut(s) 321, 418, 1474
BshFI GGCC 7 cut(s) 285, 316, 375, 448, 533, 657, 911
BshNI GGYRCC 2 cut(s) 784, 791
BshVI ATCGAT 1 cut(s) 1557
BsiEI CGRYCG 3 cut(s) 321, 418, 1474
BsiHKCI CYCGRG 1 cut(s) 1065
BsiSI CCGG 8 cut(s) 270, 286, 312, 376, 439, 555, 788, 1470
BsiWI CGTACG 1 cut(s) 1659
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 2 cut(s) 924, 1007
BsmAI GTCTC 3 cut(s) 142, 173, 1633
BsmBI CGTCTC 2 cut(s) 173, 1633
BsmFI GGGAC 1 cut(s) 628
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 7 cut(s) 285, 316, 375, 448, 533, 657, 911
BsoBI CYCGRG 1 cut(s) 1065
Bsp143I GATC 8 cut(s) 116, 318, 402, 522, 955, 1203, 1271, 1394
BspACI CCGC 5 cut(s) 528, 646, 795, 968, 1571
BspANI GGCC 7 cut(s) 285, 316, 375, 448, 533, 657, 911
BspCNI CTCAG 3 cut(s) 105, 1203, 1610
BspDI ATCGAT 1 cut(s) 1557
BspFNI CGCG 1 cut(s) 968
BspLI GGNNCC 5 cut(s) 532, 677, 786, 793, 1106
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 1 cut(s) 530
BspT107I GGYRCC 2 cut(s) 784, 791
BsrBI CCGCTC 1 cut(s) 648
BsrFI RCCGGY 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 4 cut(s) 376, 439, 555, 1156
BssMI GATC 8 cut(s) 116, 318, 402, 522, 955, 1203, 1271, 1394
BssNI GRCGYC 1 cut(s) 792
BssSI CACGAG 1 cut(s) 1109
BssT1I CCWWGG 1 cut(s) 1156
Bst2BI CACGAG 1 cut(s) 1109
Bst6I CTCTTC 1 cut(s) 842
BstACI GRCGYC 1 cut(s) 792
BstDEI CTNAG 5 cut(s) 113, 1028, 1211, 1299, 1597
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 1 cut(s) 968
BstH2I RGCGCY 2 cut(s) 795, 1347
BstHHI GCGC 3 cut(s) 693, 794, 1346
BstKTI GATC 8 cut(s) 119, 321, 405, 525, 958, 1206, 1274, 1397
BstMAI GTCTC 3 cut(s) 142, 173, 1633
BstMBI GATC 8 cut(s) 116, 318, 402, 522, 955, 1203, 1271, 1394
BstMCI CGRYCG 3 cut(s) 321, 418, 1474
BstMWI GCNNNNNNNGC 4 cut(s) 654, 791, 891, 1496
BstSCI CCNGG 6 cut(s) 268, 311, 375, 438, 554, 787
BstSFI CTRYAG 1 cut(s) 684
BstUI CGCG 1 cut(s) 968
BstV1I GCAGC 1 cut(s) 1499
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 1557
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 7 cut(s) 285, 316, 375, 448, 533, 657, 911
BsuTUI ATCGAT 1 cut(s) 1557
BtrI CACGTC 2 cut(s) 254, 1643
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 2 cut(s) 76, 693
CfoI GCGC 3 cut(s) 693, 794, 1346
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 5 cut(s) 283, 314, 531, 656, 675
ClaI ATCGAT 1 cut(s) 1557
CseI GACGC 1 cut(s) 1493
Csp6I GTAC 3 cut(s) 1231, 1237, 1660
CspCI CAANNNNNGTGG 2 cut(s) 1425, 1460
CviAII CATG 2 cut(s) 476, 715
CviQI GTAC 3 cut(s) 1231, 1237, 1660
DdeI CTNAG 5 cut(s) 113, 1028, 1211, 1299, 1597
DinI GGCGCC 1 cut(s) 793
DpnI GATC 8 cut(s) 118, 320, 404, 524, 957, 1205, 1273, 1396
DpnII GATC 8 cut(s) 116, 318, 402, 522, 955, 1203, 1271, 1394
EaeI YGGCCR 2 cut(s) 446, 909
Eam1104I CTCTTC 1 cut(s) 842
EarI CTCTTC 1 cut(s) 842
Eco130I CCWWGG 1 cut(s) 1156
Eco47I GGWCC 1 cut(s) 675
Eco47III AGCGCT 1 cut(s) 1345
Eco57I CTGAAG 1 cut(s) 1400
Eco88I CYCGRG 1 cut(s) 1065
EcoO109I RGGNCCY 1 cut(s) 531
EcoRI GAATTC 1 cut(s) 1224
EcoT14I CCWWGG 1 cut(s) 1156
EgeI GGCGCC 1 cut(s) 793
EheI GGCGCC 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 1156
Esp3I CGTCTC 2 cut(s) 173, 1633
FaeI CATG 2 cut(s) 479, 718
FaqI GGGAC 1 cut(s) 628
FatI CATG 2 cut(s) 475, 714
FauI CCCGC 3 cut(s) 521, 653, 961
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 795, 1488
FokI GGATG 1 cut(s) 528
Fsp4HI GCNGC 2 cut(s) 795, 1488
FspBI CTAG 2 cut(s) 264, 1157
GlaI GCGC 3 cut(s) 692, 793, 1345
GluI GCNGC 2 cut(s) 795, 1488
HaeII RGCGCY 2 cut(s) 795, 1347
HaeIII GGCC 7 cut(s) 285, 316, 375, 448, 533, 657, 911
HapII CCGG 8 cut(s) 270, 286, 312, 376, 439, 555, 788, 1470
HgaI GACGC 1 cut(s) 1493
HhaI GCGC 3 cut(s) 693, 794, 1346
Hin1I GRCGYC 1 cut(s) 792
Hin1II CATG 2 cut(s) 479, 718
Hin6I GCGC 3 cut(s) 691, 792, 1344
HinP1I GCGC 3 cut(s) 691, 792, 1344
HincII GTYRAC 2 cut(s) 233, 930
HindII GTYRAC 2 cut(s) 233, 930
HindIII AAGCTT 1 cut(s) 838
HpaII CCGG 8 cut(s) 270, 286, 312, 376, 439, 555, 788, 1470
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 4 cut(s) 140, 233, 294, 930
Hpy188I TCNGA 8 cut(s) 21, 55, 114, 522, 546, 652, 1353, 1654
Hpy188III TCNNGA 5 cut(s) 101, 304, 580, 1067, 1361
Hpy8I GTNNAC 4 cut(s) 140, 233, 294, 930
Hpy99I CGWCG 8 cut(s) 234, 243, 255, 344, 416, 656, 664, 764
HpyAV CCTTC 5 cut(s) 166, 274, 544, 610, 1420
HpyCH4IV ACGT 5 cut(s) 136, 253, 856, 1642, 1658
HpyCH4V TGCA 3 cut(s) 686, 718, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 654, 791, 891, 1496
HpyF3I CTNAG 5 cut(s) 113, 1028, 1211, 1299, 1597
HpySE526I ACGT 5 cut(s) 136, 253, 856, 1642, 1658
Hsp92I GRCGYC 1 cut(s) 792
Hsp92II CATG 2 cut(s) 479, 718
HspAI GCGC 3 cut(s) 691, 792, 1344
KasI GGCGCC 1 cut(s) 791
Kzo9I GATC 8 cut(s) 116, 318, 402, 522, 955, 1203, 1271, 1394
LmnI GCTCC 2 cut(s) 653, 1570
Lsp1109I GCAGC 1 cut(s) 1499
LweI GCATC 2 cut(s) 550, 1051
MaeI CTAG 2 cut(s) 264, 1157
MaeII ACGT 5 cut(s) 136, 253, 856, 1642, 1658
MaeIII GTNAC 1 cut(s) 1586
MalI GATC 8 cut(s) 118, 320, 404, 524, 957, 1205, 1273, 1396
MbiI CCGCTC 1 cut(s) 648
MboI GATC 8 cut(s) 116, 318, 402, 522, 955, 1203, 1271, 1394
MflI RGATCY 1 cut(s) 116
Mly113I GGCGCC 1 cut(s) 792
MlyI GAGTC 5 cut(s) 144, 402, 407, 590, 1322
MmeI TCCRAC 2 cut(s) 675, 1082
MnlI CCTC 8 cut(s) 365, 499, 689, 706, 1088, 1118, 1214, 1441
MroXI GAANNNNTTC 3 cut(s) 617, 856, 1528
MseI TTAA 7 cut(s) 729, 747, 1088, 1148, 1307, 1478, 1545
MspA1I CMGCKG 2 cut(s) 528, 797
MspI CCGG 8 cut(s) 270, 286, 312, 376, 439, 555, 788, 1470
MspR9I CCNGG 6 cut(s) 270, 313, 377, 440, 556, 789
Mva1269I GAATGC 1 cut(s) 829
MvnI CGCG 1 cut(s) 968
MwoI GCNNNNNNNGC 4 cut(s) 654, 791, 891, 1496
NarI GGCGCC 1 cut(s) 792
NciI CCSGG 6 cut(s) 270, 313, 377, 440, 556, 789
NdeII GATC 8 cut(s) 116, 318, 402, 522, 955, 1203, 1271, 1394
NlaIII CATG 2 cut(s) 479, 718
NlaIV GGNNCC 5 cut(s) 532, 677, 786, 793, 1106
PcsI WCGNNNNNNNCGW 3 cut(s) 238, 247, 759
PctI GAATGC 1 cut(s) 829
PdmI GAANNNNTTC 3 cut(s) 617, 856, 1528
PfeI GAWTC 5 cut(s) 56, 502, 1432, 1452, 1593
Pfl23II CGTACG 1 cut(s) 1659
PflFI GACNNNGTC 1 cut(s) 758
PkrI GCNGC 2 cut(s) 796, 1489
Ple19I CGATCG 1 cut(s) 321
PleI GAGTC 5 cut(s) 144, 401, 406, 590, 1321
PluTI GGCGCC 1 cut(s) 795
PpsI GAGTC 5 cut(s) 144, 401, 406, 590, 1321
PshBI ATTAAT 1 cut(s) 747
PspLI CGTACG 1 cut(s) 1659
PspN4I GGNNCC 5 cut(s) 532, 677, 786, 793, 1106
PspPI GGNCC 5 cut(s) 283, 314, 531, 656, 675
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 758
PvuI CGATCG 1 cut(s) 321
RsaI GTAC 3 cut(s) 1232, 1238, 1661
RsaNI GTAC 3 cut(s) 1231, 1237, 1660
SalI GTCGAC 1 cut(s) 231
SaqAI TTAA 7 cut(s) 729, 747, 1088, 1148, 1307, 1478, 1545
SatI GCNGC 2 cut(s) 795, 1488
Sau3AI GATC 8 cut(s) 116, 318, 402, 522, 955, 1203, 1271, 1394
Sau96I GGNCC 5 cut(s) 283, 314, 531, 656, 675
SchI GAGTC 5 cut(s) 144, 402, 407, 590, 1322
ScrFI CCNGG 6 cut(s) 270, 313, 377, 440, 556, 789
SfaNI GCATC 2 cut(s) 550, 1051
SfcI CTRYAG 1 cut(s) 684
SfoI GGCGCC 1 cut(s) 793
SinI GGWCC 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 1359
SmoI CTYRAG 1 cut(s) 1359
SsiI CCGC 5 cut(s) 528, 646, 795, 968, 1571
SspDI GGCGCC 1 cut(s) 791
SspMI CTAG 2 cut(s) 264, 1157
StyD4I CCNGG 6 cut(s) 268, 311, 375, 438, 554, 787
StyI CCWWGG 1 cut(s) 1156
TaiI ACGT 5 cut(s) 139, 256, 859, 1645, 1661
TaqII GACCGA 2 cut(s) 432, 495
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 5 cut(s) 56, 502, 1432, 1452, 1593
Tru1I TTAA 7 cut(s) 729, 747, 1088, 1148, 1307, 1478, 1545
Tru9I TTAA 7 cut(s) 729, 747, 1088, 1148, 1307, 1478, 1545
TscAI CASTG 2 cut(s) 76, 693
TseI GCWGC 1 cut(s) 1487
TspDTI ATGAA 6 cut(s) 199, 203, 320, 928, 1391, 1608
TspGWI ACGGA 4 cut(s) 688, 1218, 1445, 1605
TspRI CASTG 2 cut(s) 76, 693
Tth111I GACNNNGTC 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 675
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 3 cut(s) 89, 703, 1224
XmaJI CCTAGG 1 cut(s) 1156
XmiI GTMKAC 1 cut(s) 232
XmnI GAANNNNTTC 3 cut(s) 617, 856, 1528
XspI CTAG 2 cut(s) 264, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.