Rh1BG019100

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018761
Physical Location & Seq
Reverse (-)
2615652 .. 2617421
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG019100.1

Sequence Viewer

Length: 1770 bp
ATGGCCATTGACTCTATTTATTATTATGGTAAATCAGTGTATCAAGATGTCAATCTGAGATCTTATTTCGGTTCGATACGTCCACCTACGAGACTGACCTTTGGCTTTCGTCTCGGTACGTGTATTATTCTACATTTTCCCAAAAGAGCATTCATTCATTTCTTTCTTCCCCGTCGACCACGACGACTGAAACGACGCGAAAAATCCAGAACCGGAAAGGAGTGGTGGGCTTTTGGGAAAGTCGGGCCGATCAGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGAGTGGCCGGGGGGCAGGGAAAAGAGTCGAGTCGATCAGGCTCGACGACCGGGAGAAGCAAAACGAAATTCGGATTTGGCCGAAAAAGAAGCAACGCTATGGATACCATGACCGATCACCATCGAGAAAGAATAATCTTTTTAAATCACTTCGGGTCAGCAGGGCTTTCAAGCATCCGAAATACGCCGGGGTTGTAAATGACATAGCGTTCCTGATAGAAAATGACGACTCCTTCAGAAAAACAAAGTTATTAAAGTTCTTTTTGCCAAAGAAATCCGGCCCGACGAGTCATCTACTTAAAAGGACCCTCCCTGCAGTGCGCCCCTCTTTGAATTATTCGGTCATGCAATACTTATTGAATACAAAGAACCAAATTAATTTAGACCCCGTCGTAGTTCTCAATCATTTCGTGGCACCAAGCGTGTCTGAACCATCTACAATGGGGGGAGCGAATGCACAGGGAAGAAGCTTAGATAAGAGAATACGTTCTCGCATCGCTTTTTTTGTAGAAAGCTCGACCAGCGAGAAAAAGTCTTTGGCCGAAGCCAAAAAGAGGTTGACCCACTTCATTCGCTTGGCGAATGATCTTCGCTTCGCGGGAACAACAAAAACCACCATCTCGCTCTTTCCTTTTTTCGGTGCTACCTTTTTCTTTCCAAGGGATGGGGTTGGGATGTATAATAACCTTTTTTTTGAAGATGCCCGGGAACAACTCCTAGGTCAATTAAGAATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATGGAATTGATAGATAAATTCATAGACCTAGGTAGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTACGGGTACAACTCTTATTTGAACGAAGTGAAAAAAATGCGATCTTTGTTGTCTAATAGAACAAACACTAATATCTTAATTGAGTCGGTCAAGATAAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGTGAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCGTATATGTTGTTCAGGTCGATTAAAAGGCGCAGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATAGATTATGCTCCTGCGGAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGGATTTCATATAGTAAAAAAAAAAGGGACGTGCTATATCCGAAACGTACTAAATCTAGTAAATCTCGTAAAGGCAGATGTAGTAAGGGTTGCGAATCGGACGGTACACAACTTGGTTTTGGAAGATATGGCACTCAAAGTTGTAGAGCTGGTCGTCTTTCACCATTGAAGCAGCGCGTCGGGCTACAACCGGAGAATTCCATCGTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L16 Ribosomal_S3_C

Protein Analysis

589

Amino Acids

67.71

Weight (kDa)

10.35

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3_C PF00189 444 - 521 2.5e-21 Ribosomal protein S3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018761)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00090
pyrus_communis pycom461g00300
rosa_laevigata RLG00000000074
rosa_roxburghii Rroxscaffold_172G00445460 Rroxscaffold_1G00007820 Rroxscaffold_3G00250700 Rroxscaffold_7G00167100
rosa_samantha Rh1BG019100 Rh5AG095300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 712
AccB7I CCANNNNNTGG 1 cut(s) 962
AccI GTMKAC 1 cut(s) 175
AccII CGCG 3 cut(s) 198, 896, 1734
AciI CCGC 3 cut(s) 896, 1458, 1517
AclWI GGATC 2 cut(s) 1396, 1409
AcoI YGGCCR 4 cut(s) 3, 304, 377, 837
AcsI RAATTY 4 cut(s) 366, 1082, 1161, 1753
AcuI CTGAAG 1 cut(s) 517
AfaI GTAC 5 cut(s) 118, 1169, 1175, 1606, 1663
AfiI CCNNNNNNNGG 3 cut(s) 852, 935, 962
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 8 cut(s) 267, 469, 631, 658, 995, 1189, 1313, 1726
AjiI CACGTC 1 cut(s) 1588
AjuI GAANNNNNNNTTGG 6 cut(s) 134, 166, 818, 850, 1021, 1053
AluBI AGCT 4 cut(s) 768, 813, 1445, 1706
AluI AGCT 4 cut(s) 768, 813, 1445, 1706
Alw26I GTCTC 2 cut(s) 85, 116
AlwI GGATC 2 cut(s) 1396, 1409
Ama87I CYCGRG 1 cut(s) 1002
AoxI GGCC 6 cut(s) 3, 245, 304, 377, 577, 837
ApeKI GCWGC 1 cut(s) 1729
ApoI RAATTY 4 cut(s) 366, 1082, 1161, 1753
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 784
AspA2I CCTAGG 2 cut(s) 1015, 1093
AspLEI GCGC 3 cut(s) 621, 1436, 1734
AspS9I GGNCC 3 cut(s) 245, 578, 603
AsuC2I CCSGG 5 cut(s) 308, 350, 487, 1003, 1004
AsuHPI GGTGA 2 cut(s) 408, 1710
AvaI CYCGRG 1 cut(s) 1002
AvaII GGWCC 1 cut(s) 603
AvrII CCTAGG 2 cut(s) 1015, 1093
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1401
BanI GGYRCC 1 cut(s) 712
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 1741
BccI CCATC 5 cut(s) 427, 739, 923, 956, 1766
BciVI GTATCC 1 cut(s) 395
BcnI CCSGG 5 cut(s) 308, 350, 487, 1003, 1004
BcoDI GTCTC 2 cut(s) 85, 116
BfaI CTAG 4 cut(s) 1016, 1094, 1446, 1614
BfmI CTRYAG 1 cut(s) 612
BfuI GTATCC 1 cut(s) 395
BglII AGATCT 1 cut(s) 59
BisI GCNGC 1 cut(s) 1730
BlnI CCTAGG 2 cut(s) 1015, 1093
BlsI GCNGC 1 cut(s) 1731
Bme1390I CCNGG 5 cut(s) 308, 350, 487, 1003, 1004
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 1002
BmgBI CACGTC 1 cut(s) 1588
BmgT120I GGNCC 3 cut(s) 245, 578, 603
BmiI GGNNCC 4 cut(s) 605, 714, 1043, 1403
BmrFI CCNGG 5 cut(s) 308, 350, 487, 1003, 1004
BmsI GCATC 3 cut(s) 481, 801, 988
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 1281
BpuMI CCSGG 5 cut(s) 308, 350, 487, 1003, 1004
BsaAI YACGTR 1 cut(s) 120
BsaBI GATNNNNATC 3 cut(s) 51, 418, 1139
BsaJI CCNNGG 6 cut(s) 307, 486, 956, 1002, 1015, 1093
BsaWI WCCGGW 2 cut(s) 212, 1747
Bsc4I CCNNNNNNNGG 3 cut(s) 852, 935, 962
Bse8I GATNNNNATC 3 cut(s) 51, 418, 1139
BseDI CCNNGG 6 cut(s) 307, 486, 956, 1002, 1015, 1093
BseGI GGATG 3 cut(s) 472, 967, 978
BseJI GATNNNNATC 3 cut(s) 51, 418, 1139
BseLI CCNNNNNNNGG 3 cut(s) 852, 935, 962
BseMII CTCAG 3 cut(s) 47, 1139, 1307
BseXI GCAGC 1 cut(s) 1741
Bsh1236I CGCG 3 cut(s) 198, 896, 1734
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 6 cut(s) 5, 247, 306, 379, 579, 839
BshNI GGYRCC 1 cut(s) 712
BsiEI CGRYCG 1 cut(s) 349
BsiHKCI CYCGRG 1 cut(s) 1002
BsiSI CCGG 7 cut(s) 213, 307, 349, 486, 576, 1003, 1748
BsiWI CGTACG 1 cut(s) 1167
BslFI GGGAC 1 cut(s) 1598
BslI CCNNNNNNNGG 3 cut(s) 852, 935, 962
BsmAI GTCTC 2 cut(s) 85, 116
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 1598
BsmI GAATGC 3 cut(s) 149, 757, 1460
BsnI GGCC 6 cut(s) 5, 247, 306, 379, 579, 839
BsoBI CYCGRG 1 cut(s) 1002
Bsp143I GATC 9 cut(s) 59, 249, 333, 413, 883, 1140, 1208, 1331, 1401
BspACI CCGC 3 cut(s) 896, 1458, 1517
BspANI GGCC 6 cut(s) 5, 247, 306, 379, 579, 839
BspCNI CTCAG 3 cut(s) 48, 1140, 1308
BspFNI CGCG 3 cut(s) 198, 896, 1734
BspLI GGNNCC 4 cut(s) 605, 714, 1043, 1403
BspMAI CTGCAG 1 cut(s) 616
BspPI GGATC 2 cut(s) 1396, 1409
BspT107I GGYRCC 1 cut(s) 712
BssECI CCNNGG 6 cut(s) 307, 486, 956, 1002, 1015, 1093
BssMI GATC 9 cut(s) 59, 249, 333, 413, 883, 1140, 1208, 1331, 1401
BssT1I CCWWGG 3 cut(s) 956, 1015, 1093
Bst4CI ACNGT 1 cut(s) 1661
BstBAI YACGTR 1 cut(s) 120
BstDEI CTNAG 5 cut(s) 56, 769, 1148, 1316, 1543
BstF5I GGATG 3 cut(s) 472, 967, 978
BstFNI CGCG 3 cut(s) 198, 896, 1734
BstHHI GCGC 3 cut(s) 621, 1436, 1734
BstKTI GATC 9 cut(s) 62, 252, 336, 416, 886, 1143, 1211, 1334, 1404
BstMAI GTCTC 2 cut(s) 85, 116
BstMBI GATC 9 cut(s) 59, 249, 333, 413, 883, 1140, 1208, 1331, 1401
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 3 cut(s) 819, 1442, 1738
BstSCI CCNGG 5 cut(s) 306, 348, 485, 1001, 1002
BstSFI CTRYAG 1 cut(s) 612
BstUI CGCG 3 cut(s) 198, 896, 1734
BstV1I GCAGC 1 cut(s) 1741
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 59, 1401
BstYI RGATCY 2 cut(s) 59, 1401
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 6 cut(s) 5, 247, 306, 379, 579, 839
BtgZI GCGATG 1 cut(s) 778
BtrI CACGTC 1 cut(s) 1588
BtsCI GGATG 3 cut(s) 472, 967, 978
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 2 cut(s) 42, 621
CfoI GCGC 3 cut(s) 621, 1436, 1734
Cfr13I GGNCC 3 cut(s) 245, 578, 603
Cfr9I CCCGGG 1 cut(s) 1002
CseI GACGC 2 cut(s) 204, 1723
Csp6I GTAC 5 cut(s) 117, 1168, 1174, 1605, 1662
CviAII CATG 3 cut(s) 407, 643, 1048
CviQI GTAC 5 cut(s) 117, 1168, 1174, 1605, 1662
DdeI CTNAG 5 cut(s) 56, 769, 1148, 1316, 1543
DpnI GATC 9 cut(s) 61, 251, 335, 415, 885, 1142, 1210, 1333, 1403
DpnII GATC 9 cut(s) 59, 249, 333, 413, 883, 1140, 1208, 1331, 1401
DraI TTTAAA 1 cut(s) 442
EaeI YGGCCR 4 cut(s) 3, 304, 377, 837
Eco130I CCWWGG 3 cut(s) 956, 1015, 1093
Eco47I GGWCC 1 cut(s) 603
Eco57I CTGAAG 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 1002
EcoO109I RGGNCCY 1 cut(s) 603
EcoRI GAATTC 2 cut(s) 1161, 1753
EcoT14I CCWWGG 3 cut(s) 956, 1015, 1093
ErhI CCWWGG 3 cut(s) 956, 1015, 1093
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 3 cut(s) 410, 646, 1051
FaqI GGGAC 1 cut(s) 1598
FatI CATG 3 cut(s) 406, 642, 1047
FauI CCCGC 1 cut(s) 889
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 1730
FokI GGATG 3 cut(s) 459, 974, 985
Fsp4HI GCNGC 1 cut(s) 1730
FspBI CTAG 4 cut(s) 1016, 1094, 1446, 1614
GlaI GCGC 3 cut(s) 620, 1435, 1733
GluI GCNGC 1 cut(s) 1730
HaeIII GGCC 6 cut(s) 5, 247, 306, 379, 579, 839
HapII CCGG 7 cut(s) 213, 307, 349, 486, 576, 1003, 1748
HgaI GACGC 2 cut(s) 204, 1723
HhaI GCGC 3 cut(s) 621, 1436, 1734
Hin1II CATG 3 cut(s) 410, 646, 1051
Hin6I GCGC 3 cut(s) 619, 1434, 1732
HinP1I GCGC 3 cut(s) 619, 1434, 1732
HincII GTYRAC 2 cut(s) 176, 858
HindII GTYRAC 2 cut(s) 176, 858
HindIII AAGCTT 1 cut(s) 766
HinfI GANTC 9 cut(s) 11, 324, 329, 527, 586, 1029, 1250, 1539, 1652
HpaII CCGG 7 cut(s) 213, 307, 349, 486, 576, 1003, 1748
HphI GGTGA 2 cut(s) 408, 1710
Hpy166II GTNNAC 4 cut(s) 83, 176, 858, 1664
Hpy188I TCNGA 8 cut(s) 57, 372, 477, 536, 727, 1290, 1599, 1657
Hpy188III TCNNGA 6 cut(s) 44, 207, 423, 511, 1258, 1298
Hpy8I GTNNAC 4 cut(s) 83, 176, 858, 1664
Hpy99I CGWCG 8 cut(s) 177, 186, 198, 275, 347, 586, 692, 1739
HpyAV CCTTC 2 cut(s) 541, 1357
HpyCH4III ACNGT 1 cut(s) 1661
HpyCH4IV ACGT 5 cut(s) 79, 119, 784, 1587, 1603
HpyCH4V TGCA 3 cut(s) 614, 646, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 819, 1442, 1738
HpyF3I CTNAG 5 cut(s) 56, 769, 1148, 1316, 1543
HpySE526I ACGT 5 cut(s) 79, 119, 784, 1587, 1603
Hsp92II CATG 3 cut(s) 410, 646, 1051
HspAI GCGC 3 cut(s) 619, 1434, 1732
Kzo9I GATC 9 cut(s) 59, 249, 333, 413, 883, 1140, 1208, 1331, 1401
LmnI GCTCC 2 cut(s) 746, 1516
Lsp1109I GCAGC 1 cut(s) 1741
LweI GCATC 3 cut(s) 481, 801, 988
MaeI CTAG 4 cut(s) 1016, 1094, 1446, 1614
MaeII ACGT 5 cut(s) 79, 119, 784, 1587, 1603
MalI GATC 9 cut(s) 61, 251, 335, 415, 885, 1142, 1210, 1333, 1403
MboI GATC 9 cut(s) 59, 249, 333, 413, 883, 1140, 1208, 1331, 1401
MboII GAAGA 9 cut(s) 158, 251, 293, 296, 774, 878, 1007, 1170, 1692
MflI RGATCY 2 cut(s) 59, 1401
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 6 cut(s) 5, 333, 338, 521, 595, 1259
MmeI TCCRAC 1 cut(s) 1019
MnlI CCTC 5 cut(s) 617, 634, 846, 1055, 1390
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 784
MscI TGGCCA 1 cut(s) 5
MseI TTAA 8 cut(s) 441, 551, 597, 675, 1025, 1244, 1427, 1491
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 7 cut(s) 213, 307, 349, 486, 576, 1003, 1748
MspR9I CCNGG 5 cut(s) 308, 350, 487, 1003, 1004
Mva1269I GAATGC 3 cut(s) 149, 757, 1460
MvnI CGCG 3 cut(s) 198, 896, 1734
MwoI GCNNNNNNNGC 3 cut(s) 819, 1442, 1738
NciI CCSGG 5 cut(s) 308, 350, 487, 1003, 1004
NdeII GATC 9 cut(s) 59, 249, 333, 413, 883, 1140, 1208, 1331, 1401
NlaIII CATG 3 cut(s) 410, 646, 1051
NlaIV GGNNCC 4 cut(s) 605, 714, 1043, 1403
PcsI WCGNNNNNNNCGW 2 cut(s) 181, 190
PctI GAATGC 3 cut(s) 149, 757, 1460
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 3 cut(s) 1029, 1539, 1652
Pfl23II CGTACG 1 cut(s) 1167
PflFI GACNNNGTC 1 cut(s) 686
PflMI CCANNNNNTGG 1 cut(s) 962
PkrI GCNGC 1 cut(s) 1731
PleI GAGTC 6 cut(s) 5, 332, 337, 521, 594, 1258
PpsI GAGTC 6 cut(s) 5, 332, 337, 521, 594, 1258
Ppu21I YACGTR 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 603
PshBI ATTAAT 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 603
PspLI CGTACG 1 cut(s) 1167
PspN4I GGNNCC 4 cut(s) 605, 714, 1043, 1403
PspPI GGNCC 3 cut(s) 245, 578, 603
PspPPI RGGWCCY 1 cut(s) 603
PsrI GAACNNNNNNTAC 2 cut(s) 1399, 1431
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 2 cut(s) 59, 1401
PsyI GACNNNGTC 1 cut(s) 686
RsaI GTAC 5 cut(s) 118, 1169, 1175, 1606, 1663
RsaNI GTAC 5 cut(s) 117, 1168, 1174, 1605, 1662
SalI GTCGAC 1 cut(s) 174
SaqAI TTAA 8 cut(s) 441, 551, 597, 675, 1025, 1244, 1427, 1491
SatI GCNGC 1 cut(s) 1730
Sau3AI GATC 9 cut(s) 59, 249, 333, 413, 883, 1140, 1208, 1331, 1401
Sau96I GGNCC 3 cut(s) 245, 578, 603
SchI GAGTC 6 cut(s) 5, 333, 338, 521, 595, 1259
ScrFI CCNGG 5 cut(s) 308, 350, 487, 1003, 1004
SfaNI GCATC 3 cut(s) 481, 801, 988
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 603
SmaI CCCGGG 1 cut(s) 1004
SmlI CTYRAG 1 cut(s) 1296
SmoI CTYRAG 1 cut(s) 1296
SsiI CCGC 3 cut(s) 896, 1458, 1517
SspMI CTAG 4 cut(s) 1016, 1094, 1446, 1614
StyD4I CCNGG 5 cut(s) 306, 348, 485, 1001, 1002
StyI CCWWGG 3 cut(s) 956, 1015, 1093
TaaI ACNGT 1 cut(s) 1661
TaiI ACGT 5 cut(s) 82, 122, 787, 1590, 1606
TaqI TCGA 8 cut(s) 74, 175, 327, 332, 342, 422, 815, 1423
TaqII GACCGA 3 cut(s) 426, 628, 1243
TfiI GAWTC 3 cut(s) 1029, 1539, 1652
Tru1I TTAA 8 cut(s) 441, 551, 597, 675, 1025, 1244, 1427, 1491
Tru9I TTAA 8 cut(s) 441, 551, 597, 675, 1025, 1244, 1427, 1491
TscAI CASTG 2 cut(s) 42, 621
TseI GCWGC 1 cut(s) 1729
TspDTI ATGAA 7 cut(s) 142, 146, 251, 856, 1075, 1397, 1554
TspGWI ACGGA 2 cut(s) 1155, 1394
TspMI CCCGGG 1 cut(s) 1002
TspRI CASTG 2 cut(s) 42, 621
Tth111I GACNNNGTC 1 cut(s) 686
Van91I CCANNNNNTGG 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 603
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 4 cut(s) 366, 1082, 1161, 1753
XmaI CCCGGG 1 cut(s) 1002
XmaJI CCTAGG 2 cut(s) 1015, 1093
XmiI GTMKAC 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 784
XspI CTAG 4 cut(s) 1016, 1094, 1446, 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.