Rroxscaffold_7G00167100

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018761
Physical Location & Seq
Reverse (-)
8363999 .. 8369684
5686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167100.1

Sequence Viewer

Length: 408 bp
ATGAACGACCTCCTCAAGGGGGACCTAACCATTTTGATCATGAACAATAGGACTGAAGTTTATGACAGTATGAAATACCAAGTTCAAGGCTTTAAGCTCCGGCTCTTGCTTGAAAAATTAGTCATCTGGAAGCTTGTGACATTGTTATGTATTTGGTCTGCCCGGTTTTTTAAATGGAGGGCTGCAGAGAGGATCAAGAAGAGTAGTACATGGTGGAAGATGGGTTCGGCCTTGGCAATAGAGGGATCAAGTCAATTAAGAATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATGGAATTGATAGAGAAATTCATAGACCTAGGTAGGATAGGAGAATTGCAATCATCGCCAACAAACCCAACAACACTGTCTTCGAACTGCAGCGTACCAGCCAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L16 Ribosomal_S3_C

Protein Analysis

135

Amino Acids

15.55

Weight (kDa)

9.71

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018761)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00090
pyrus_communis pycom461g00300
rosa_laevigata RLG00000000074
rosa_roxburghii Rroxscaffold_172G00445460 Rroxscaffold_1G00007820 Rroxscaffold_3G00250700 Rroxscaffold_7G00167100
rosa_samantha Rh1BG019100 Rh5AG095300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 200, 253
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 208, 393
AfiI CCNNNNNNNGG 2 cut(s) 16, 19
AgsI TTSAA 2 cut(s) 86, 113
AjuI GAANNNNNNNTTGG 2 cut(s) 253, 285
AloI GAACNNNNNNTCC 2 cut(s) 208, 240
AluBI AGCT 2 cut(s) 97, 133
AluI AGCT 2 cut(s) 97, 133
AlwI GGATC 2 cut(s) 200, 253
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 182, 387
ApoI RAATTY 1 cut(s) 314
AspA2I CCTAGG 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 163
AsuII TTCGAA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 22
AvrII CCTAGG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 169, 399
BccI CCATC 1 cut(s) 214
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 1 cut(s) 163
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 2 cut(s) 183, 385
BisI GCNGC 2 cut(s) 183, 388
BlnI CCTAGG 1 cut(s) 325
BlsI GCNGC 2 cut(s) 184, 389
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 23, 275
BmrFI CCNGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 231, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 19
BseDI CCNNGG 2 cut(s) 231, 325
BseLI CCNNNNNNNGG 2 cut(s) 16, 19
BseXI GCAGC 2 cut(s) 169, 399
BshFI GGCC 1 cut(s) 230
BsiSI CCGG 2 cut(s) 100, 163
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 16, 19
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 230
Bsp119I TTCGAA 1 cut(s) 380
Bsp143I GATC 3 cut(s) 36, 192, 245
BspANI GGCC 1 cut(s) 230
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 23, 275
BspMAI CTGCAG 2 cut(s) 187, 389
BspPI GGATC 2 cut(s) 200, 253
BspT104I TTCGAA 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 231, 325
BssMI GATC 3 cut(s) 36, 192, 245
BssT1I CCWWGG 2 cut(s) 231, 325
Bst4CI ACNGT 2 cut(s) 68, 375
Bst6I CTCTTC 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 380
BstENI CCTNNNNNAGG 1 cut(s) 14
BstKTI GATC 3 cut(s) 39, 195, 248
BstMBI GATC 3 cut(s) 36, 192, 245
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 2 cut(s) 183, 385
BstV1I GCAGC 2 cut(s) 169, 399
BstV2I GAAGAC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 371
CciI TCATGA 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 207, 392
CviAII CATG 3 cut(s) 40, 210, 280
CviJI RGCY 8 cut(s) 90, 97, 103, 133, 182, 230, 398, 403
CviKI_1 RGCY 8 cut(s) 90, 97, 103, 133, 182, 230, 398, 403
CviQI GTAC 2 cut(s) 207, 392
DpnI GATC 3 cut(s) 38, 194, 247
DpnII GATC 3 cut(s) 36, 192, 245
DraI TTTAAA 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 231, 325
Eco47I GGWCC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 231, 325
ErhI CCWWGG 2 cut(s) 231, 325
FaeI CATG 3 cut(s) 43, 213, 283
FaiI YATR 8 cut(s) 41, 63, 71, 148, 211, 281, 320, 406
FaqI GGGAC 1 cut(s) 35
FatI CATG 3 cut(s) 39, 209, 279
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 183, 388
Fsp4HI GCNGC 2 cut(s) 183, 388
FspBI CTAG 1 cut(s) 326
GluI GCNGC 2 cut(s) 183, 388
HaeIII GGCC 1 cut(s) 230
HapII CCGG 2 cut(s) 100, 163
Hin1II CATG 3 cut(s) 43, 213, 283
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 1 cut(s) 261
HpaII CCGG 2 cut(s) 100, 163
Hpy188III TCNNGA 3 cut(s) 40, 127, 196
HpyCH4III ACNGT 2 cut(s) 68, 375
HpyCH4V TGCA 3 cut(s) 185, 346, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
Hsp92II CATG 3 cut(s) 43, 213, 283
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 3 cut(s) 36, 192, 245
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 112, 113, 176
Lsp1109I GCAGC 2 cut(s) 169, 399
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 38, 194, 247
MboI GATC 3 cut(s) 36, 192, 245
MboII GAAGA 3 cut(s) 211, 229, 369
MluCI AATT 5 cut(s) 116, 254, 302, 314, 341
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 6 cut(s) 20, 23, 171, 183, 235, 287
MseI TTAA 3 cut(s) 93, 171, 257
MslI CAYNNNNRTG 1 cut(s) 145
MspI CCGG 2 cut(s) 100, 163
MspR9I CCNGG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 352
NciI CCSGG 1 cut(s) 163
NdeII GATC 3 cut(s) 36, 192, 245
NlaIII CATG 3 cut(s) 43, 213, 283
NlaIV GGNNCC 2 cut(s) 23, 275
NmuCI GTSAC 1 cut(s) 136
NspV TTCGAA 1 cut(s) 380
PagI TCATGA 1 cut(s) 39
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 2 cut(s) 184, 389
PpuMI RGGWCCY 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 23, 275
PspPI GGNCC 1 cut(s) 22
PspPPI RGGWCCY 1 cut(s) 22
PstI CTGCAG 2 cut(s) 187, 389
RsaI GTAC 2 cut(s) 208, 393
RsaNI GTAC 2 cut(s) 207, 392
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 3 cut(s) 93, 171, 257
SatI GCNGC 2 cut(s) 183, 388
Sau3AI GATC 3 cut(s) 36, 192, 245
Sau96I GGNCC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 163
SetI ASST 8 cut(s) 12, 27, 99, 135, 279, 297, 327, 331
SfcI CTRYAG 2 cut(s) 183, 385
SfuI TTCGAA 1 cut(s) 380
SinI GGWCC 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 5 cut(s) 116, 254, 302, 314, 341
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 2 cut(s) 231, 325
TaaI ACNGT 2 cut(s) 68, 375
TaqI TCGA 1 cut(s) 380
TasI AATT 5 cut(s) 116, 254, 302, 314, 341
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 1 cut(s) 261
Tru1I TTAA 3 cut(s) 93, 171, 257
Tru9I TTAA 3 cut(s) 93, 171, 257
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 182, 387
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 4 cut(s) 17, 56, 86, 307
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 22
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 325
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.