pycom461g00300

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000461
OG0018761
Physical Location & Seq
Forward (+)
237273 .. 238937
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom461g00300.1

Sequence Viewer

Length: 1665 bp
ATGGCACGAAAAGGAAATCCGATTTCGGTAAGACTTGATCTTAATCGTAGTTCAGATTCAAGTTGGTTTAGTGATTATTATTATGGTAAATTAGTGTATCAAGATGTCAATCTGAGGTCTTATTTCGGTTCCATACGTCCACCTACGAGACTTACTTTTGGCTTTCGTCTCGGTACGTGTATTATTCTACATTTTCCCAAAAGAACATTCATTCATTTCTTTCTTCCCCGTCGACCACGACGACTGAAACGACGCGAAAAATCCAGACCCGGAAAGGAGAAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCGATCGGGTGTCTTCATTCAAGCGGCGATACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGGGGTCAGGGAAAAGAGTCGAGTCGATCAGGCTCGACGACCGGGAGAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAACGCTATGGATACCATGACCGATCACCATCGATAAAGAAGAATCTTTCTAAATCACTTCGGGTCAGCAGGGCCTTCAAGCATCCGAAATACGCCGGGGTTGTAAATGGCATAGCGTTCCTGATAGAAAATGACGACCCCTTCAGAAAAACTAAGTTATTCAAGTTCTTTTTGCCAAAGAAGTCCCGCTCCGACGGCTCGACGAGTCATCTACTTAAAAGGACCCTCCCTGCAGTGCGCCCCTCCTTCAATTATTCGGTCATGCAATACTTATTGAATACAAAGAACCAAATGCATTTCGACCCCGTCGTAGTTCTCAATCATTTCGTGGCACCGGGCGTGGCTGAACCATCTACGATGGGAGGAGCGAATGCACAGGGAAGAAGCTTAGATAAGAGAATACGTTCTCGCATCGCTTTGTTTGTAGAAAGCTCGACCAGCGATAAAAAGTGTTTGGCCGAAGCCAAAAAGAGGTTGACCCGCTTCATTCGCCAAGCGAATGATCTTCGCTTCGCGGGAACAACAAAAACCACCATCCCGCTCTTTCCTTTTTTCGGTGCTACCTTTTTCTTTCCAAGGGATGGGGTTGGGATGTATAATAACCTTTTTTTTGAGGATGCCCGGGAACAACTCCTAGGTCAATTAAGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATGGAATTGATAGAGAAATTCATAGACCTAGATAGGATAGGAGAATTGATAAGGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGACAAATTCCGTGCGGGTACAACTCTTATTTGAACGAAGTGAAAAAAATGCGATCTTTGTTGTCTAATAGAACAAACACTAATACCTTAATTGAGTCGGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGTGAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCGTATATGTTGTTCAGATCGATCAAAAGGCGCAGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATAGATTATGCTCCTGCGAAAGTATCTACTCGTTACGGAATCTTAGGTGTCAAAGTGTGGATTTCATATAGTAAGAAAAAGTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L16 Ribosomal_S3_C

Protein Analysis

555

Amino Acids

63.95

Weight (kDa)

10.38

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3_C PF00189 469 - 546 1.5e-17 Ribosomal protein S3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018761)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00090
pyrus_communis pycom461g00300
rosa_laevigata RLG00000000074
rosa_roxburghii Rroxscaffold_172G00445460 Rroxscaffold_1G00007820 Rroxscaffold_3G00250700 Rroxscaffold_7G00167100
rosa_samantha Rh1BG019100 Rh5AG095300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 787
AccB7I CCANNNNNTGG 1 cut(s) 1037
AccBSI CCGCTC 2 cut(s) 645, 997
AccI GTMKAC 1 cut(s) 232
AccII CGCG 2 cut(s) 255, 971
AciI CCGC 7 cut(s) 336, 643, 937, 971, 995, 1245, 1533
AclWI GGATC 3 cut(s) 1112, 1471, 1484
AcoI YGGCCR 2 cut(s) 443, 912
AcsI RAATTY 2 cut(s) 1157, 1236
AcuI CTGAAG 1 cut(s) 583
AfaI GTAC 2 cut(s) 175, 1250
AfiI CCNNNNNNNGG 4 cut(s) 292, 927, 1010, 1037
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 8 cut(s) 60, 333, 535, 619, 706, 733, 1264, 1388
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 3 cut(s) 843, 888, 1520
AluI AGCT 3 cut(s) 843, 888, 1520
Alw26I GTCTC 2 cut(s) 142, 173
AlwI GGATC 3 cut(s) 1112, 1471, 1484
Ama87I CYCGRG 1 cut(s) 1077
AoxI GGCC 6 cut(s) 283, 311, 370, 443, 528, 912
ApoI RAATTY 2 cut(s) 1157, 1236
Asp700I GAANNNNTTC 1 cut(s) 859
AspA2I CCTAGG 1 cut(s) 1090
AspLEI GCGC 2 cut(s) 696, 1511
AspS9I GGNCC 4 cut(s) 283, 311, 528, 678
AsuC2I CCSGG 7 cut(s) 270, 374, 416, 553, 792, 1078, 1079
AsuHPI GGTGA 1 cut(s) 474
AvaI CYCGRG 1 cut(s) 1077
AvaII GGWCC 1 cut(s) 678
AvrII CCTAGG 1 cut(s) 1090
BamHI GGATCC 1 cut(s) 1476
BanI GGYRCC 1 cut(s) 787
BbsI GAAGAC 1 cut(s) 317
BccI CCATC 5 cut(s) 493, 808, 814, 998, 1031
BceAI ACGGC 1 cut(s) 667
BciVI GTATCC 1 cut(s) 461
BcnI CCSGG 7 cut(s) 270, 374, 416, 553, 792, 1078, 1079
BcoDI GTCTC 2 cut(s) 142, 173
BfaI CTAG 3 cut(s) 1091, 1169, 1521
BfmI CTRYAG 1 cut(s) 687
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 1 cut(s) 337
BlnI CCTAGG 1 cut(s) 1090
BlsI GCNGC 1 cut(s) 338
Bme1390I CCNGG 7 cut(s) 270, 374, 416, 553, 792, 1078, 1079
Bme18I GGWCC 1 cut(s) 678
BmeT110I CYCGRG 1 cut(s) 1077
BmgT120I GGNCC 4 cut(s) 283, 311, 528, 678
BmiI GGNNCC 5 cut(s) 130, 680, 789, 1118, 1478
BmrFI CCNGG 7 cut(s) 270, 374, 416, 553, 792, 1078, 1079
BmsI GCATC 3 cut(s) 547, 876, 1063
BpiI GAAGAC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 1356
BpuMI CCSGG 7 cut(s) 270, 374, 416, 553, 792, 1078, 1079
Bsa29I ATCGAT 2 cut(s) 488, 1498
BsaAI YACGTR 1 cut(s) 177
BsaBI GATNNNNATC 4 cut(s) 42, 108, 484, 1214
BsaJI CCNNGG 5 cut(s) 373, 552, 1031, 1077, 1090
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 927, 1010, 1037
Bse118I RCCGGY 1 cut(s) 285
Bse8I GATNNNNATC 4 cut(s) 42, 108, 484, 1214
BseCI ATCGAT 2 cut(s) 488, 1498
BseDI CCNNGG 5 cut(s) 373, 552, 1031, 1077, 1090
BseGI GGATG 5 cut(s) 538, 990, 1042, 1053, 1078
BseJI GATNNNNATC 4 cut(s) 42, 108, 484, 1214
BseLI CCNNNNNNNGG 4 cut(s) 292, 927, 1010, 1037
BseMII CTCAG 3 cut(s) 104, 1214, 1382
BseRI GAGGAG 1 cut(s) 834
Bsh1236I CGCG 2 cut(s) 255, 971
Bsh1285I CGRYCG 2 cut(s) 318, 415
BshFI GGCC 6 cut(s) 285, 313, 372, 445, 530, 914
BshNI GGYRCC 1 cut(s) 787
BshVI ATCGAT 2 cut(s) 488, 1498
BsiEI CGRYCG 2 cut(s) 318, 415
BsiHKCI CYCGRG 1 cut(s) 1077
BsiSI CCGG 7 cut(s) 270, 286, 373, 415, 552, 791, 1078
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 4 cut(s) 292, 927, 1010, 1037
BsmAI GTCTC 2 cut(s) 142, 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 625
BsmI GAATGC 2 cut(s) 832, 1535
BsnI GGCC 6 cut(s) 285, 313, 372, 445, 530, 914
BsoBI CYCGRG 1 cut(s) 1077
BspACI CCGC 7 cut(s) 336, 643, 937, 971, 995, 1245, 1533
BspANI GGCC 6 cut(s) 285, 313, 372, 445, 530, 914
BspCNI CTCAG 3 cut(s) 105, 1215, 1383
BspDI ATCGAT 2 cut(s) 488, 1498
BspFNI CGCG 2 cut(s) 255, 971
BspLI GGNNCC 5 cut(s) 130, 680, 789, 1118, 1478
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 3 cut(s) 1112, 1471, 1484
BspT107I GGYRCC 1 cut(s) 787
BsrBI CCGCTC 2 cut(s) 645, 997
BsrFI RCCGGY 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 5 cut(s) 373, 552, 1031, 1077, 1090
BssT1I CCWWGG 2 cut(s) 1031, 1090
BstBAI YACGTR 1 cut(s) 177
BstDEI CTNAG 6 cut(s) 113, 609, 844, 1223, 1391, 1618
BstF5I GGATG 5 cut(s) 538, 990, 1042, 1053, 1078
BstFNI CGCG 2 cut(s) 255, 971
BstHHI GCGC 2 cut(s) 696, 1511
BstMAI GTCTC 2 cut(s) 142, 173
BstMCI CGRYCG 2 cut(s) 318, 415
BstMWI GCNNNNNNNGC 4 cut(s) 651, 894, 945, 1517
BstSCI CCNGG 7 cut(s) 268, 372, 414, 551, 790, 1076, 1077
BstSFI CTRYAG 1 cut(s) 687
BstUI CGCG 2 cut(s) 255, 971
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 1476
BstYI RGATCY 1 cut(s) 1476
Bsu15I ATCGAT 2 cut(s) 488, 1498
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 6 cut(s) 285, 313, 372, 445, 530, 914
BsuTUI ATCGAT 2 cut(s) 488, 1498
BtgZI GCGATG 1 cut(s) 853
BtsCI GGATG 5 cut(s) 538, 990, 1042, 1053, 1078
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
CfoI GCGC 2 cut(s) 696, 1511
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 4 cut(s) 283, 311, 528, 678
Cfr9I CCCGGG 1 cut(s) 1077
ClaI ATCGAT 2 cut(s) 488, 1498
CseI GACGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 174, 1249
CviAII CATG 3 cut(s) 473, 718, 1123
CviQI GTAC 2 cut(s) 174, 1249
DdeI CTNAG 6 cut(s) 113, 609, 844, 1223, 1391, 1618
EaeI YGGCCR 2 cut(s) 443, 912
Eco130I CCWWGG 2 cut(s) 1031, 1090
Eco47I GGWCC 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 583
Eco88I CYCGRG 1 cut(s) 1077
EcoO109I RGGNCCY 2 cut(s) 528, 678
EcoT14I CCWWGG 2 cut(s) 1031, 1090
EcoT22I ATGCAT 1 cut(s) 753
ErhI CCWWGG 2 cut(s) 1031, 1090
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 476, 721, 1126
FaqI GGGAC 1 cut(s) 625
FatI CATG 3 cut(s) 472, 717, 1122
FauI CCCGC 5 cut(s) 650, 944, 964, 1002, 1238
FauNDI CATATG 1 cut(s) 1661
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 337
FokI GGATG 5 cut(s) 525, 977, 1049, 1060, 1085
Fsp4HI GCNGC 1 cut(s) 337
FspBI CTAG 3 cut(s) 1091, 1169, 1521
GlaI GCGC 2 cut(s) 695, 1510
GluI GCNGC 1 cut(s) 337
HaeIII GGCC 6 cut(s) 285, 313, 372, 445, 530, 914
HapII CCGG 7 cut(s) 270, 286, 373, 415, 552, 791, 1078
HgaI GACGC 1 cut(s) 261
HhaI GCGC 2 cut(s) 696, 1511
Hin1II CATG 3 cut(s) 476, 721, 1126
Hin6I GCGC 2 cut(s) 694, 1509
HinP1I GCGC 2 cut(s) 694, 1509
HincII GTYRAC 2 cut(s) 233, 933
HindII GTYRAC 2 cut(s) 233, 933
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 7 cut(s) 56, 390, 395, 499, 661, 1325, 1614
HpaII CCGG 7 cut(s) 270, 286, 373, 415, 552, 791, 1078
HphI GGTGA 1 cut(s) 474
Hpy166II GTNNAC 3 cut(s) 140, 233, 933
Hpy188I TCNGA 8 cut(s) 21, 55, 114, 543, 602, 649, 1365, 1495
Hpy188III TCNNGA 5 cut(s) 101, 264, 577, 1333, 1373
Hpy8I GTNNAC 3 cut(s) 140, 233, 933
Hpy99I CGWCG 7 cut(s) 234, 243, 255, 413, 653, 661, 767
HpyAV CCTTC 5 cut(s) 274, 541, 607, 712, 1432
HpyCH4IV ACGT 3 cut(s) 136, 176, 859
HpyCH4V TGCA 4 cut(s) 689, 721, 751, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 651, 894, 945, 1517
HpyF3I CTNAG 6 cut(s) 113, 609, 844, 1223, 1391, 1618
HpySE526I ACGT 3 cut(s) 136, 176, 859
Hsp92II CATG 3 cut(s) 476, 721, 1126
HspAI GCGC 2 cut(s) 694, 1509
LmnI GCTCC 3 cut(s) 650, 821, 1591
LweI GCATC 3 cut(s) 547, 876, 1063
MaeI CTAG 3 cut(s) 1091, 1169, 1521
MaeII ACGT 3 cut(s) 136, 176, 859
MaeIII GTNAC 1 cut(s) 1607
MbiI CCGCTC 2 cut(s) 645, 997
MboII GAAGA 7 cut(s) 215, 317, 359, 362, 508, 849, 953
MflI RGATCY 1 cut(s) 1476
MluCI AATT 9 cut(s) 89, 432, 706, 1097, 1145, 1157, 1184, 1236, 1320
MlyI GAGTC 4 cut(s) 399, 404, 670, 1334
MmeI TCCRAC 2 cut(s) 672, 1094
MnlI CCTC 9 cut(s) 108, 362, 692, 709, 812, 921, 1063, 1130, 1465
Mph1103I ATGCAT 1 cut(s) 753
MroXI GAANNNNTTC 1 cut(s) 859
MseI TTAA 5 cut(s) 42, 672, 1100, 1319, 1566
MspI CCGG 7 cut(s) 270, 286, 373, 415, 552, 791, 1078
MspR9I CCNGG 7 cut(s) 270, 374, 416, 553, 792, 1078, 1079
Mva1269I GAATGC 2 cut(s) 832, 1535
MvnI CGCG 2 cut(s) 255, 971
MwoI GCNNNNNNNGC 4 cut(s) 651, 894, 945, 1517
NciI CCSGG 7 cut(s) 270, 374, 416, 553, 792, 1078, 1079
NdeI CATATG 1 cut(s) 1661
NlaIII CATG 3 cut(s) 476, 721, 1126
NlaIV GGNNCC 5 cut(s) 130, 680, 789, 1118, 1478
NsiI ATGCAT 1 cut(s) 753
PcsI WCGNNNNNNNCGW 3 cut(s) 238, 247, 762
PctI GAATGC 2 cut(s) 832, 1535
PdmI GAANNNNTTC 1 cut(s) 859
PfeI GAWTC 3 cut(s) 56, 499, 1614
PflFI GACNNNGTC 1 cut(s) 761
PflMI CCANNNNNTGG 1 cut(s) 1037
PkrI GCNGC 1 cut(s) 338
Ple19I CGATCG 1 cut(s) 318
PleI GAGTC 4 cut(s) 398, 403, 669, 1333
PpsI GAGTC 4 cut(s) 398, 403, 669, 1333
Ppu21I YACGTR 1 cut(s) 177
PpuMI RGGWCCY 1 cut(s) 678
Psp5II RGGWCCY 1 cut(s) 678
PspN4I GGNNCC 5 cut(s) 130, 680, 789, 1118, 1478
PspPI GGNCC 4 cut(s) 283, 311, 528, 678
PspPPI RGGWCCY 1 cut(s) 678
PsrI GAACNNNNNNTAC 2 cut(s) 1474, 1506
PstI CTGCAG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 1476
PsyI GACNNNGTC 1 cut(s) 761
PvuI CGATCG 1 cut(s) 318
RsaI GTAC 2 cut(s) 175, 1250
RsaNI GTAC 2 cut(s) 174, 1249
SalI GTCGAC 1 cut(s) 231
SaqAI TTAA 5 cut(s) 42, 672, 1100, 1319, 1566
SatI GCNGC 1 cut(s) 337
Sau96I GGNCC 4 cut(s) 283, 311, 528, 678
SchI GAGTC 4 cut(s) 399, 404, 670, 1334
ScrFI CCNGG 7 cut(s) 270, 374, 416, 553, 792, 1078, 1079
SfaNI GCATC 3 cut(s) 547, 876, 1063
SfcI CTRYAG 1 cut(s) 687
SinI GGWCC 1 cut(s) 678
SmaI CCCGGG 1 cut(s) 1079
SmlI CTYRAG 1 cut(s) 1371
SmoI CTYRAG 1 cut(s) 1371
Sse9I AATT 9 cut(s) 89, 432, 706, 1097, 1145, 1157, 1184, 1236, 1320
SsiI CCGC 7 cut(s) 336, 643, 937, 971, 995, 1245, 1533
SspMI CTAG 3 cut(s) 1091, 1169, 1521
StyD4I CCNGG 7 cut(s) 268, 372, 414, 551, 790, 1076, 1077
StyI CCWWGG 2 cut(s) 1031, 1090
TaiI ACGT 3 cut(s) 139, 179, 862
TaqI TCGA 9 cut(s) 232, 393, 398, 408, 488, 656, 756, 890, 1498
TaqII GACCGA 3 cut(s) 492, 703, 1318
TasI AATT 9 cut(s) 89, 432, 706, 1097, 1145, 1157, 1184, 1236, 1320
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 3 cut(s) 56, 499, 1614
Tru1I TTAA 5 cut(s) 42, 672, 1100, 1319, 1566
Tru9I TTAA 5 cut(s) 42, 672, 1100, 1319, 1566
TscAI CASTG 1 cut(s) 696
TspDTI ATGAA 7 cut(s) 199, 203, 317, 931, 1150, 1472, 1629
TspGWI ACGGA 3 cut(s) 1230, 1469, 1626
TspMI CCCGGG 1 cut(s) 1077
TspRI CASTG 1 cut(s) 696
Tth111I GACNNNGTC 1 cut(s) 761
Van91I CCANNNNNTGG 1 cut(s) 1037
VpaK11BI GGWCC 1 cut(s) 678
XapI RAATTY 2 cut(s) 1157, 1236
XmaI CCCGGG 1 cut(s) 1077
XmaJI CCTAGG 1 cut(s) 1090
XmiI GTMKAC 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 859
XspI CTAG 3 cut(s) 1091, 1169, 1521
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.