Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014120

Physical Location & Seq

Genomic Coordinates Forward (+)

57774 .. 58331

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTTCCACTCAATTTTCATTACGAAGATGTATCACGTCAAGATCCGTTGCTCAAACCGAATCACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTAGTACCAAAGGCACCCTATAATTTCATAATAAAAAATGGAAAATTGGCTATGGAGATTCCGCGCGGTCAGAAATTCATACAGACACAAAGGGGTTCGACAGGAAAGTCCTTTCGATCTAATCCATTCTTGGGGTCAAATAAAGACAAAGGATATGTAAGTGACCTAGCACGACAAAGCACTCTCCGAGGGCATGGAATGTCTAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTATTAGATTTTCCGGTCGAAATACGGAAAAACTCCATTCAATTCTCGATGGAAACGGAGTTTTGCGAATTCTCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCGGGGGTTCAATGTGACTATTATCACTTCGGCCAACACACAAGATGAGACTTTACCACTGTGGAGCGGTTTTTTGCAAAAAGATGAGGGGGAAACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S14

Protein Analysis

185

Amino Acids

21.11

Weight (kDa)

5.97

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07725 ATMG00210
fragaria_vesca	FvH4_3g34030
pyrus_communis	pycom461g00320
rosa_chinensis	RchiOBHm_Chr5g0061711 RchiOBHm_Chr5g0065471
rosa_laevigata	RLG00000035495
rosa_multiflora	Rmu_sc0005048.1_g000010
rosa_roxburghii	Rroxscaffold_1G00019070 Rroxscaffold_5G00382560
rosa_rugosa	Rorug05G0342300 Rorug05G0342400
rosa_samantha	Rh5AG404100 Rh5BG416800 Rh5CG441300 Rh5DG431100
rosa_wichuraiana	Rw5G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	211, 337
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	522
AccII	CGCG	2 cut(s)	169, 171
AciI	CCGC	3 cut(s)	167, 171, 522
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	2 cut(s)	38, 97
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	179, 410
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	236, 424
AgsI	TTSAA	2 cut(s)	383, 466
AjiI	CACGTC	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	345, 497
AlwI	GGATC	2 cut(s)	38, 97
AoxI	GGCC	1 cut(s)	486
ApoI	RAATTY	2 cut(s)	179, 410
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	118
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	345, 497
BfaI	CTAG	1 cut(s)	272
BglII	AGATCT	1 cut(s)	441
Bme1390I	CCNGG	2 cut(s)	87, 419
BmgBI	CACGTC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	87, 419
Bpu14I	TTCGAA	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	292, 417
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 424
Bse1I	ACTGG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	292, 417
BseLI	CCNNNNNNNGG	2 cut(s)	236, 424
BseNI	ACTGG	1 cut(s)	429
Bsh1236I	CGCG	2 cut(s)	169, 171
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	488
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	356, 419
BslI	CCNNNNNNNGG	2 cut(s)	236, 424
BsmAI	GTCTC	2 cut(s)	345, 497
BsnI	GGCC	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	447
Bsp143I	GATC	5 cut(s)	43, 89, 221, 430, 441
BspACI	CCGC	3 cut(s)	167, 171, 522
BspANI	GGCC	1 cut(s)	488
BspFNI	CGCG	2 cut(s)	169, 171
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	38, 97
BspT104I	TTCGAA	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	2 cut(s)	292, 417
BssMI	GATC	5 cut(s)	43, 89, 221, 430, 441
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	334, 516
BstBI	TTCGAA	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	552
BstFNI	CGCG	2 cut(s)	169, 171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	5 cut(s)	46, 92, 224, 433, 444
BstMAI	GTCTC	2 cut(s)	345, 497
BstMBI	GATC	5 cut(s)	43, 89, 221, 430, 441
BstMCI	CGRYCG	1 cut(s)	360
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	85, 417
BstUI	CGCG	2 cut(s)	169, 171
BstX2I	RGATCY	2 cut(s)	43, 441
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstYI	RGATCY	2 cut(s)	43, 441
BsuRI	GGCC	1 cut(s)	488
BtrI	CACGTC	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	512
CfoI	GCGC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	2 cut(s)	155, 488
CviKI_1	RGCY	2 cut(s)	155, 488
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	5 cut(s)	45, 91, 223, 432, 443
DpnII	GATC	5 cut(s)	43, 89, 221, 430, 441
DrdI	GACNNNNNNGTC	2 cut(s)	211, 337
DseDI	GACNNNNNNGTC	2 cut(s)	211, 337
EaeI	YGGCCR	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	302
FaiI	YATR	8 cut(s)	77, 126, 134, 158, 185, 261, 300, 453
FatI	CATG	1 cut(s)	298
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	2 cut(s)	356, 419
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	61, 163, 324
HpaII	CCGG	2 cut(s)	356, 419
Hpy188I	TCNGA	3 cut(s)	177, 293, 323
Hpy188III	TCNNGA	4 cut(s)	41, 328, 388, 439
HpyCH4III	ACNGT	2 cut(s)	334, 516
HpyCH4IV	ACGT	2 cut(s)	37, 72
HpyCH4V	TGCA	1 cut(s)	532
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	2 cut(s)	37, 72
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	43, 89, 221, 430, 441
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	6 cut(s)	72, 99, 192, 369, 410, 432
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	2 cut(s)	37, 72
MaeIII	GTNAC	2 cut(s)	266, 469
MalI	GATC	5 cut(s)	45, 91, 223, 432, 443
MbiI	CCGCTC	1 cut(s)	522
MboI	GATC	5 cut(s)	43, 89, 221, 430, 441
MboII	GAAGA	3 cut(s)	38, 436, 440
MflI	RGATCY	2 cut(s)	43, 441
MluCI	AATT	7 cut(s)	13, 127, 149, 179, 310, 383, 410
MnlI	CCTC	2 cut(s)	287, 535
MroXI	GAANNNNTTC	1 cut(s)	453
MspI	CCGG	2 cut(s)	356, 419
MspR9I	CCNGG	2 cut(s)	87, 419
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	2 cut(s)	169, 171
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	5 cut(s)	43, 89, 221, 430, 441
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	266, 469
NspV	TTCGAA	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	61, 163, 324
PfoI	TCCNGGA	1 cut(s)	85
Psp1406I	AACGTT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	43, 441
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
Sau3AI	GATC	5 cut(s)	43, 89, 221, 430, 441
ScrFI	CCNGG	2 cut(s)	87, 419
SetI	ASST	3 cut(s)	40, 75, 273
SfuI	TTCGAA	1 cut(s)	447
Sse9I	AATT	7 cut(s)	13, 127, 149, 179, 310, 383, 410
SsiI	CCGC	3 cut(s)	167, 171, 522
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	85, 417
TaaI	ACNGT	2 cut(s)	334, 516
TaiI	ACGT	2 cut(s)	40, 75
TaqI	TCGA	7 cut(s)	203, 220, 329, 360, 389, 438, 447
TaqII	GACCGA	1 cut(s)	307
TasI	AATT	7 cut(s)	13, 127, 149, 179, 310, 383, 410
TfiI	GAWTC	3 cut(s)	61, 163, 324
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	2 cut(s)	266, 469
Tsp45I	GTSAC	2 cut(s)	266, 469
TspDTI	ATGAA	3 cut(s)	8, 121, 172
TspGWI	ACGGA	3 cut(s)	36, 382, 413
TspRI	CASTG	1 cut(s)	519
XapI	RAATTY	2 cut(s)	179, 410
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.