Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014120

Physical Location & Seq

Genomic Coordinates Reverse (-)

62406492 .. 62406875

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTAAGAGAACGCCGACGCAGCCTGGGATTAAGATTAGGATTCCGACTGGGGTTAGTATATCGTAGCCTCAAAACAAGATGCCGGAGATTGGAAAATTGCCATGGAGATTTCCGGCAGTCAAAAATTGCCACTGAGCTCGGCAGACCACTCTCCGCAGCTTTTTCAGAGCCTCAAGGTAATGTCTCTTTTGTCTTCTCCAGTTCAAATTTAGTTACCATGGAGACAGAGTTTATAGAGGCCTCGCCGGAGCTTGAGGACCATTTCGAGATCTTTGAACAGATTAAAGGGTTCTTCCCCAAAAAGCTCCAATCCCTCTCCTTATTCGAGCCTGACCCAAATCTTGAAGAAGGATTCCTTCATTCAACTCCAAGACATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015934 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.72

Weight (kDa)

7.86

Isoelectric Point (pI)

68.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07725 ATMG00210
fragaria_vesca	FvH4_3g34030
pyrus_communis	pycom461g00320
rosa_chinensis	RchiOBHm_Chr5g0061711 RchiOBHm_Chr5g0065471
rosa_laevigata	RLG00000035495
rosa_multiflora	Rmu_sc0005048.1_g000010
rosa_roxburghii	Rroxscaffold_1G00019070 Rroxscaffold_5G00382560
rosa_rugosa	Rorug05G0342300 Rorug05G0342400
rosa_samantha	Rh5AG404100 Rh5BG416800 Rh5CG441300 Rh5DG431100
rosa_wichuraiana	Rw5G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	4 cut(s)	207, 278, 347, 366
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	139, 161, 253, 307
AluI	AGCT	4 cut(s)	139, 161, 253, 307
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	190, 218
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	21, 158
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	33, 170
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	190, 218
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	22, 159
BlsI	GCNGC	2 cut(s)	23, 160
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	184
BpuEI	CTTGAG	2 cut(s)	159, 275
BsaJI	CCNNGG	3 cut(s)	25, 103, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	54, 201
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	25, 103, 219
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	54, 201
BseXI	GCAGC	2 cut(s)	33, 170
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	85, 115, 248
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	190, 218
BsnI	GGCC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	270
Bsp19I	CCATGG	2 cut(s)	103, 219
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	54, 201
BssECI	CCNNGG	3 cut(s)	25, 103, 219
BssMI	GATC	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	103, 219
Bst2UI	CCWGG	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	5, 135
BstDSI	CCRYGG	2 cut(s)	103, 219
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	2 cut(s)	190, 218
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	33, 170
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	2 cut(s)	103, 219
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	259
CseI	GACGC	1 cut(s)	27
CviAII	CATG	2 cut(s)	104, 220
CviJI	RGCY	9 cut(s)	24, 69, 139, 161, 172, 242, 253, 307, 331
CviKI_1	RGCY	9 cut(s)	24, 69, 139, 161, 172, 242, 253, 307, 331
DdeI	CTNAG	2 cut(s)	5, 135
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	103, 219
Eco147I	AGGCCT	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	103, 219
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	2 cut(s)	103, 219
FaeI	CATG	2 cut(s)	107, 223
FaiI	YATR	4 cut(s)	61, 105, 221, 236
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	2 cut(s)	103, 219
Fnu4HI	GCNGC	2 cut(s)	22, 159
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	22, 159
GluI	GCNGC	2 cut(s)	22, 159
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	3 cut(s)	85, 115, 248
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	107, 223
HinfI	GANTC	2 cut(s)	42, 354
HpaII	CCGG	3 cut(s)	85, 115, 248
Hpy188I	TCNGA	2 cut(s)	47, 169
Hpy188III	TCNNGA	2 cut(s)	268, 344
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	2 cut(s)	344, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	2 cut(s)	5, 135
Hsp92II	CATG	2 cut(s)	107, 223
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	250, 312
LpnPI	CCDG	8 cut(s)	11, 35, 38, 98, 128, 214, 261, 345
Lsp1109I	GCAGC	2 cut(s)	33, 170
LweI	GCATC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	3 cut(s)	187, 286, 359
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	3 cut(s)	97, 126, 208
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	80, 183, 232, 250, 253, 326
MseI	TTAA	2 cut(s)	32, 285
MspI	CCGG	3 cut(s)	85, 115, 248
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	21
NcoI	CCATGG	2 cut(s)	103, 219
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	2 cut(s)	107, 223
NmeAIII	GCCGAG	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	42, 354
PkrI	GCNGC	2 cut(s)	23, 160
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	32, 285
SatI	GCNGC	2 cut(s)	22, 159
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	141, 163, 181, 255, 309
SfaNI	GCATC	1 cut(s)	71
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	174, 254
SmoI	CTYRAG	2 cut(s)	174, 254
Sse9I	AATT	3 cut(s)	97, 126, 208
SseBI	AGGCCT	1 cut(s)	242
SsiI	CCGC	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	103, 219
TaqI	TCGA	2 cut(s)	267, 327
TasI	AATT	3 cut(s)	97, 126, 208
TfiI	GAWTC	2 cut(s)	42, 354
Tru1I	TTAA	2 cut(s)	32, 285
Tru9I	TTAA	2 cut(s)	32, 285
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	2 cut(s)	21, 158
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.