Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014120

Physical Location & Seq

Genomic Coordinates Reverse (-)

41853810 .. 41854291

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0342400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTTGGTTTGGAACTTTATCAAATATGGAAGAATAGAAATGATGTTTTATTTCGATCTGCTGAGTTTTCTCCTTCCTCTGTAGTGCATGCTTCAGCCACGTTTAGTGCTACCTACAGGGTTCATAATCCTCAGCCTGTCTCTACTCCCAGGAGCATAAGTGAAGTCATTAAATGGCACCCTCCTCCTGCAAATTTGTTCAAGCTAAACATTGATGATCCGGTTTCTTCTTCGAGTCATGCCACAACTGGATTTGTGATCAGGAATCAGTTTGGTGACCTCATTGTTGCTGTTCTCGATCCATTGGTATCTCCTCTATTCCTATTGCGGAATGCACGACGCTCAAGGATGGCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015934 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

9.85

Isoelectric Point (pI)

66.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07725 ATMG00210
fragaria_vesca	FvH4_3g34030
pyrus_communis	pycom461g00320
rosa_chinensis	RchiOBHm_Chr5g0061711 RchiOBHm_Chr5g0065471
rosa_laevigata	RLG00000035495
rosa_multiflora	Rmu_sc0005048.1_g000010
rosa_roxburghii	Rroxscaffold_1G00019070 Rroxscaffold_5G00382560
rosa_rugosa	Rorug05G0342300 Rorug05G0342400
rosa_samantha	Rh5AG404100 Rh5BG416800 Rh5CG441300 Rh5DG431100
rosa_wichuraiana	Rw5G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	177
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	212, 293
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	2 cut(s)	212, 293
ApoI	RAATTY	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	145
BfmI	CTRYAG	2 cut(s)	81, 115
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	54, 146
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	174, 303
BshNI	GGYRCC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	56, 217, 258, 298
BspACI	CCGC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	55, 145
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	212, 293
BspT107I	GGYRCC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	4 cut(s)	56, 217, 258, 298
Bst2UI	CCWGG	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	63, 132
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	354
BstKTI	GATC	4 cut(s)	59, 220, 261, 301
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	4 cut(s)	56, 217, 258, 298
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	92
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	2 cut(s)	81, 115
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	90
CseI	GACGC	1 cut(s)	348
CviAII	CATG	2 cut(s)	89, 239
CviJI	RGCY	4 cut(s)	98, 136, 205, 353
CviKI_1	RGCY	4 cut(s)	98, 136, 205, 353
DdeI	CTNAG	2 cut(s)	63, 132
DpnI	GATC	4 cut(s)	58, 219, 260, 300
DpnII	GATC	4 cut(s)	56, 217, 258, 298
Eco57I	CTGAAG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	92, 242
FaiI	YATR	5 cut(s)	28, 90, 126, 158, 240
FalI	AAGNNNNNCTT	1 cut(s)	337
FatI	CATG	2 cut(s)	88, 238
FbaI	TGATCA	1 cut(s)	258
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	92, 242
HinfI	GANTC	2 cut(s)	235, 265
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	287
Hpy188III	TCNNGA	2 cut(s)	262, 296
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	88, 191, 335
HpyF3I	CTNAG	2 cut(s)	63, 132
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	92, 242
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	4 cut(s)	56, 217, 258, 298
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	103, 136, 150, 163, 201, 234, 234, 247
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	4 cut(s)	58, 219, 260, 300
MboI	GATC	4 cut(s)	56, 217, 258, 298
MboII	GAAGA	3 cut(s)	43, 219, 222
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	6 cut(s)	88, 141, 192, 195, 290, 324
MseI	TTAA	1 cut(s)	171
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	151
NdeII	GATC	4 cut(s)	56, 217, 258, 298
NlaIII	CATG	2 cut(s)	92, 242
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	56, 217, 258, 298
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	4 cut(s)	104, 116, 207, 282
SfcI	CTRYAG	2 cut(s)	81, 115
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	328
StyD4I	CCNGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	55, 233, 297
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	113
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.