Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014120

Physical Location & Seq

Genomic Coordinates Reverse (-)

29441456 .. 29443599

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGAGGAGATCCGGAGTTTTGCTACGCCAATTGCTCGGAAATCAAACCAATCCAGCCCTTCTTCACCATCAAAACCTAACCCTAAATTCACTTCCTTCCGCCGCCAAATCCTTCTCCACCTTCCCGCTCGATTTTCACTACGAAGACGTACTGCGTCAGGATATGCTGCTCAAGATGAACTACGATAACGTCATGCAAGTTCCCCGCCTCTCCGAGCTGAAGCTTCTCTCGAAGTCGCCGGAGATCGGGAAAATCGCCATGGAGATTTCCGGTGGTCAGAAGTTTCTGACACAGAAGGATAAGGATTTGACGGCCAAGGGGTTTAAGAACGCCAAAGGCAAAGAGGTCAGCCACCGAGCTCGGCAGACCACACTCCGGAGAATCGGAATGTCTAATTTCTTGGTGAGAAGCCTGACGGTGATGTCTCTGTTGTCTTCTCCGGTTCAAATTCGGAAGAATTTCATTCAGTTTTCGATGGAGACTGAGTTTATCGAGTCCGCGCCGGAGCTGGAGGATCATTTCGAGATCTTTGAACATATTAAAGGCTTCAATGTGTTTATTGTCACTTCAGCCAAAACCAAAGAGGAGGCGTCACTGCTGTGGAGTGGCTTTTTGCAAAAGGATGAGGTAGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015934 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.23

Weight (kDa)

9.27

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07725 ATMG00210
fragaria_vesca	FvH4_3g34030
pyrus_communis	pycom461g00320
rosa_chinensis	RchiOBHm_Chr5g0061711 RchiOBHm_Chr5g0065471
rosa_laevigata	RLG00000035495
rosa_multiflora	Rmu_sc0005048.1_g000010
rosa_roxburghii	Rroxscaffold_1G00019070 Rroxscaffold_5G00382560
rosa_rugosa	Rorug05G0342300 Rorug05G0342400
rosa_samantha	Rh5AG404100 Rh5BG416800 Rh5CG441300 Rh5DG431100
rosa_wichuraiana	Rw5G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
AccBSI	CCGCTC	1 cut(s)	130
AccII	CGCG	1 cut(s)	503
AccIII	TCCGGA	2 cut(s)	14, 378
AciI	CCGC	5 cut(s)	102, 105, 128, 208, 501
AclWI	GGATC	2 cut(s)	6, 525
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	3 cut(s)	88, 450, 460
AcuI	CTGAAG	2 cut(s)	242, 555
AcyI	GRCGYC	1 cut(s)	593
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	248, 378
AgsI	TTSAA	3 cut(s)	449, 536, 553
AleI	CACNNNNGTG	1 cut(s)	601
AluBI	AGCT	5 cut(s)	220, 226, 362, 511, 635
AluI	AGCT	5 cut(s)	220, 226, 362, 511, 635
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	432, 476
AlwI	GGATC	2 cut(s)	6, 525
Aor13HI	TCCGGA	2 cut(s)	14, 378
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	3 cut(s)	88, 450, 460
Asp700I	GAANNNNTTC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	505
AsuHPI	GGTGA	3 cut(s)	59, 418, 433
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	2 cut(s)	153, 429
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	2 cut(s)	78, 472
BceAI	ACGGC	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	432, 476
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	2 cut(s)	105, 170
BlsI	GCNGC	2 cut(s)	106, 171
BpiI	GAAGAC	2 cut(s)	153, 429
BpmI	CTGGAG	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	261, 318
BsaWI	WCCGGW	4 cut(s)	14, 272, 378, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 378
BseAI	TCCGGA	2 cut(s)	14, 378
BseDI	CCNNGG	2 cut(s)	261, 318
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	248, 378
BseMII	CTCAG	1 cut(s)	477
BseRI	GAGGAG	2 cut(s)	22, 602
BseXI	GCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	503
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	6 cut(s)	15, 242, 273, 379, 443, 506
BslI	CCNNNNNNNGG	2 cut(s)	248, 378
BsmAI	GTCTC	2 cut(s)	432, 476
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp13I	TCCGGA	2 cut(s)	14, 378
Bsp143I	GATC	4 cut(s)	11, 246, 517, 528
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	5 cut(s)	102, 105, 128, 208, 501
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	478
BspEI	TCCGGA	2 cut(s)	14, 378
BspFNI	CGCG	1 cut(s)	503
BspPI	GGATC	2 cut(s)	6, 525
BsrBI	CCGCTC	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	261, 318
BssMI	GATC	4 cut(s)	11, 246, 517, 528
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	2 cut(s)	261, 318
Bst4CI	ACNGT	1 cut(s)	421
BstACI	GRCGYC	1 cut(s)	593
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	4 cut(s)	14, 249, 520, 531
BstMAI	GTCTC	2 cut(s)	432, 476
BstMBI	GATC	4 cut(s)	11, 246, 517, 528
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	2 cut(s)	153, 429
BstX2I	RGATCY	2 cut(s)	11, 528
BstYI	RGATCY	2 cut(s)	11, 528
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	505
CseI	GACGC	2 cut(s)	146, 582
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	196, 262
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	4 cut(s)	13, 248, 519, 530
DpnII	GATC	4 cut(s)	11, 246, 517, 528
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	2 cut(s)	261, 318
Eco24I	GRGCYC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	242, 555
EcoICRI	GAGCTC	1 cut(s)	362
EcoT14I	CCWWGG	2 cut(s)	261, 318
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	2 cut(s)	261, 318
FaeI	CATG	2 cut(s)	199, 265
FaiI	YATR	4 cut(s)	167, 197, 263, 540
FatI	CATG	2 cut(s)	195, 261
FauI	CCCGC	2 cut(s)	135, 215
Fnu4HI	GCNGC	2 cut(s)	105, 170
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	2 cut(s)	105, 170
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	2 cut(s)	105, 170
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	6 cut(s)	15, 242, 273, 379, 443, 506
HgaI	GACGC	2 cut(s)	146, 582
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	2 cut(s)	199, 265
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	2 cut(s)	384, 497
HpaII	CCGG	6 cut(s)	15, 242, 273, 379, 443, 506
HphI	GGTGA	3 cut(s)	59, 418, 433
Hpy188I	TCNGA	6 cut(s)	41, 217, 282, 291, 389, 456
Hpy188III	TCNNGA	7 cut(s)	15, 161, 175, 232, 250, 379, 526
HpyAV	CCTTC	5 cut(s)	71, 108, 124, 133, 292
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	150, 192
HpyCH4V	TGCA	2 cut(s)	199, 619
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	2 cut(s)	150, 192
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	2 cut(s)	199, 265
HspAI	GCGC	1 cut(s)	503
Kpn2I	TCCGGA	2 cut(s)	14, 378
Kzo9I	GATC	4 cut(s)	11, 246, 517, 528
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	1 cut(s)	156
MaeII	ACGT	2 cut(s)	150, 192
MaeIII	GTNAC	2 cut(s)	565, 594
MalI	GATC	4 cut(s)	13, 248, 519, 530
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	4 cut(s)	11, 246, 517, 528
MboII	GAAGA	4 cut(s)	56, 158, 429, 469
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	2 cut(s)	11, 528
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	5 cut(s)	32, 88, 397, 450, 460
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	6 cut(s)	221, 340, 508, 580, 583, 622
MroI	TCCGGA	2 cut(s)	14, 378
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	2 cut(s)	327, 543
MslI	CAYNNNNRTG	1 cut(s)	601
MspI	CCGG	6 cut(s)	15, 242, 273, 379, 443, 506
MunI	CAATTG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	503
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	4 cut(s)	11, 246, 517, 528
NlaIII	CATG	2 cut(s)	199, 265
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	565, 594
OliI	CACNNNNGTG	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	106, 171
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	11, 528
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	601
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	327, 543
SatI	GCNGC	2 cut(s)	105, 170
Sau3AI	GATC	4 cut(s)	11, 246, 517, 528
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	5 cut(s)	32, 88, 397, 450, 460
SsiI	CCGC	5 cut(s)	102, 105, 128, 208, 501
SstI	GAGCTC	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	261, 318
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	2 cut(s)	153, 195
TaqI	TCGA	5 cut(s)	132, 233, 476, 495, 525
TasI	AATT	5 cut(s)	32, 88, 397, 450, 460
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	327, 543
Tru9I	TTAA	2 cut(s)	327, 543
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	2 cut(s)	565, 594
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	565, 594
TspDTI	ATGAA	2 cut(s)	194, 454
TspRI	CASTG	1 cut(s)	603
XapI	RAATTY	3 cut(s)	88, 450, 460
XmnI	GAANNNNTTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.