RchiOBHm_Chr5g0065471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014120
Physical Location & Seq
Forward (+)
71340230 .. 71341785
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34133

Sequence Viewer

Length: 282 bp
ATGCTAAGAGAATGCCGACACAGCCTGGGATTAAGATTAGGATTCCGACTGGGGTTTAGGATTAAGATTTCGACTGGGGTTAGTATATTGCAGCCTTGGAACAAGATGCCGGAGATCGGAAAATTGCCATGGAGATTTCTGGCAGTCAGAAATTGCAACGAGCTCGGCATACCACTCTCCGCAGCTTATTTAGAGCCTCACGGTGATGTCTTTTTTGTCTTCTCCGGTTCAAATTCAGTTTACCATGGAGACGGAGTTTATAGAGGCCTCGCCGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.36

Weight (kDa)

9.78

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07725 ATMG00210
fragaria_vesca FvH4_3g34030
pyrus_communis pycom461g00320
rosa_chinensis RchiOBHm_Chr5g0061711 RchiOBHm_Chr5g0065471
rosa_laevigata RLG00000035495
rosa_multiflora Rmu_sc0005048.1_g000010
rosa_roxburghii Rroxscaffold_1G00019070 Rroxscaffold_5G00382560
rosa_rugosa Rorug05G0342300 Rorug05G0342400
rosa_samantha Rh5AG404100 Rh5BG416800 Rh5CG441300 Rh5DG431100
rosa_wichuraiana Rw5G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 231
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 3 cut(s) 163, 185, 278
AluI AGCT 3 cut(s) 163, 185, 278
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 243
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 91, 182
ApoI RAATTY 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 103, 194
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 243
BisI GCNGC 2 cut(s) 92, 183
BlsI GCNGC 2 cut(s) 93, 184
Bme1390I CCNGG 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 2 cut(s) 59, 84
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 2 cut(s) 59, 84
BpiI GAAGAC 1 cut(s) 211
BsaJI CCNNGG 4 cut(s) 25, 95, 128, 244
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 54, 79
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 4 cut(s) 25, 95, 128, 244
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 54, 79
BseXI GCAGC 2 cut(s) 103, 194
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 110, 225, 273
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 114
Bsp19I CCATGG 2 cut(s) 128, 244
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 267
BsrI ACTGG 2 cut(s) 54, 79
BssECI CCNNGG 4 cut(s) 25, 95, 128, 244
BssMI GATC 1 cut(s) 114
BssT1I CCWWGG 3 cut(s) 95, 128, 244
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 2 cut(s) 128, 244
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 103, 194
BstV2I GAAGAC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 267
BtgI CCRYGG 2 cut(s) 128, 244
CviAII CATG 2 cut(s) 129, 245
CviJI RGCY 7 cut(s) 24, 94, 163, 185, 196, 267, 278
CviKI_1 RGCY 7 cut(s) 24, 94, 163, 185, 196, 267, 278
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 3 cut(s) 95, 128, 244
Eco147I AGGCCT 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 3 cut(s) 95, 128, 244
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 3 cut(s) 95, 128, 244
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 2 cut(s) 132, 248
FaiI YATR 5 cut(s) 86, 130, 170, 246, 261
FatI CATG 2 cut(s) 128, 244
Fnu4HI GCNGC 2 cut(s) 92, 183
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 2 cut(s) 92, 183
GluI GCNGC 2 cut(s) 92, 183
HaeIII GGCC 1 cut(s) 267
HapII CCGG 3 cut(s) 110, 225, 273
Hin1II CATG 2 cut(s) 132, 248
HinfI GANTC 1 cut(s) 42
HpaII CCGG 3 cut(s) 110, 225, 273
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 47, 119, 149
Hpy8I GTNNAC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 91, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 2 cut(s) 132, 248
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 7 cut(s) 11, 35, 38, 60, 123, 125, 238
Lsp1109I GCAGC 2 cut(s) 103, 194
LweI GCATC 1 cut(s) 96
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 3 cut(s) 122, 151, 232
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 207, 257, 278
MseI TTAA 2 cut(s) 32, 63
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 3 cut(s) 110, 225, 273
MspR9I CCNGG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 21
NcoI CCATGG 2 cut(s) 128, 244
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 132, 248
NmeAIII GCCGAG 1 cut(s) 144
PceI AGGCCT 1 cut(s) 267
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 93, 184
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 32, 63
SatI GCNGC 2 cut(s) 92, 183
Sau3AI GATC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 165
SetI ASST 3 cut(s) 165, 187, 280
SfaNI GCATC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 122, 151, 232
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 1 cut(s) 180
SstI GAGCTC 1 cut(s) 165
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 3 cut(s) 95, 128, 244
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 71
TasI AATT 3 cut(s) 122, 151, 232
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 2 cut(s) 32, 63
Tru9I TTAA 2 cut(s) 32, 63
TseI GCWGC 2 cut(s) 91, 182
TspGWI ACGGA 1 cut(s) 267
XapI RAATTY 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.