Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014120

Physical Location & Seq

Genomic Coordinates Reverse (-)

67096576 .. 67099316

Gene Structure 2741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGAGGAGATCCGGAGTTTTGCTCCGCCAATTGCTCGGGAATCAAAGCAACCCAGCTCTTCTTCACCATCACAACCTTTCTTCTAATTCTCTCCAAACCCTAACCCTAACTTCAATTCCCTCCGCCTCCAAATCCTTCTCCACCTTCCCGCTCGATTTTCACTACGAGGACGTACTGCGTCAGGATATGCTGCTCAAGATGAACTACGATAACGTTATGCAAGTTCCGCGCCTTTGCGAACTGAAACTGTTATCGAAGGCGCCGGAGATCGGAAAAATTGCGATGGAGATTTCCGGCGGACAGAAGTTCCTGACGCAGAAGGATAAGGATTTGACGGCCAAGGGGTTTAGGGGCGCCAATTTGGTCAGCCACCGAGCTCGGCAGACCACTCTCCGGAGAATCGGAATGTCTAATTTTCTGGTGAGAAGCCTGACGGTGATGTCTCTTTTGTCTTCTCCGGTTCAAATTCGGAAGAATTTTATTCAGTTTTCGATGGAGACGGAGTTTATAGAGTCCTCGCCGGAGCTTGAGGATCATTTCGAGATCTTTGAACAGATTAAAGGGTTCAATGTGACTATTGTCACTTCGGCCAGCACCAAAGATGAGGCTTCACTGCTGTGGAGCGGCTTTTTGCAAAAGGATGAGATAGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015934 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.74

Weight (kDa)

8.69

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07725 ATMG00210
fragaria_vesca	FvH4_3g34030
pyrus_communis	pycom461g00320
rosa_chinensis	RchiOBHm_Chr5g0061711 RchiOBHm_Chr5g0065471
rosa_laevigata	RLG00000035495
rosa_multiflora	Rmu_sc0005048.1_g000010
rosa_roxburghii	Rroxscaffold_1G00019070 Rroxscaffold_5G00382560
rosa_rugosa	Rorug05G0342300 Rorug05G0342400
rosa_samantha	Rh5AG404100 Rh5BG416800 Rh5CG441300 Rh5DG431100
rosa_wichuraiana	Rw5G037970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AccB1I	GGYRCC	2 cut(s)	262, 356
AccBSI	CCGCTC	2 cut(s)	154, 627
AccII	CGCG	1 cut(s)	232
AccIII	TCCGGA	2 cut(s)	14, 396
AciI	CCGC	6 cut(s)	28, 126, 152, 230, 300, 627
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	2 cut(s)	6, 543
AcoI	YGGCCR	2 cut(s)	339, 591
AcsI	RAATTY	2 cut(s)	468, 478
AcyI	GRCGYC	2 cut(s)	263, 357
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	272, 396
AgsI	TTSAA	4 cut(s)	117, 467, 554, 571
AleI	CACNNNNGTG	1 cut(s)	619
AluBI	AGCT	4 cut(s)	59, 380, 529, 653
AluI	AGCT	4 cut(s)	59, 380, 529, 653
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	2 cut(s)	450, 494
AlwI	GGATC	2 cut(s)	6, 543
Ama87I	CYCGRG	1 cut(s)	38
Aor13HI	TCCGGA	2 cut(s)	14, 396
AoxI	GGCC	2 cut(s)	339, 591
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	468, 478
AspLEI	GCGC	3 cut(s)	234, 265, 359
AsuHPI	GGTGA	3 cut(s)	59, 436, 451
AvaI	CYCGRG	1 cut(s)	38
BanI	GGYRCC	2 cut(s)	262, 356
BanII	GRGCYC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	78, 280, 490
BceAI	ACGGC	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	450, 494
BfoI	RGCGCY	2 cut(s)	266, 360
BglII	AGATCT	1 cut(s)	546
BisI	GCNGC	2 cut(s)	194, 628
BlsI	GCNGC	2 cut(s)	195, 629
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	264, 358
BoxI	GACNNNNGTC	1 cut(s)	581
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	2 cut(s)	182, 551
BsaHI	GRCGYC	2 cut(s)	263, 357
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	3 cut(s)	14, 396, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 396
BseAI	TCCGGA	2 cut(s)	14, 396
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	2 cut(s)	272, 396
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	341, 593
BshNI	GGYRCC	2 cut(s)	262, 356
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	6 cut(s)	15, 266, 297, 397, 461, 524
BslI	CCNNNNNNNGG	2 cut(s)	272, 396
BsmAI	GTCTC	2 cut(s)	450, 494
BsmBI	CGTCTC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	341, 593
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	2 cut(s)	14, 396
Bsp143I	GATC	4 cut(s)	11, 270, 535, 546
BspACI	CCGC	6 cut(s)	28, 126, 152, 230, 300, 627
BspANI	GGCC	2 cut(s)	341, 593
BspEI	TCCGGA	2 cut(s)	14, 396
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	264, 358
BspPI	GGATC	2 cut(s)	6, 543
BspQI	GCTCTTC	1 cut(s)	66
BspT107I	GGYRCC	2 cut(s)	262, 356
BsrBI	CCGCTC	2 cut(s)	154, 627
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	4 cut(s)	11, 270, 535, 546
BssNI	GRCGYC	2 cut(s)	263, 357
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	252, 439
Bst6I	CTCTTC	1 cut(s)	66
BstACI	GRCGYC	2 cut(s)	263, 357
BstC8I	GCNNGC	1 cut(s)	595
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	232
BstH2I	RGCGCY	2 cut(s)	266, 360
BstHHI	GCGC	3 cut(s)	234, 265, 359
BstKTI	GATC	4 cut(s)	14, 273, 538, 549
BstMAI	GTCTC	2 cut(s)	450, 494
BstMBI	GATC	4 cut(s)	11, 270, 535, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstPAI	GACNNNNGTC	1 cut(s)	581
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	2 cut(s)	11, 546
BstYI	RGATCY	2 cut(s)	11, 546
BsuRI	GGCC	2 cut(s)	341, 593
BtgZI	GCGATG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	649
BtsI	GCAGTG	1 cut(s)	614
BtsIMutI	CAGTG	1 cut(s)	614
Cac8I	GCNNGC	1 cut(s)	595
CfoI	GCGC	3 cut(s)	234, 265, 359
CseI	GACGC	2 cut(s)	170, 325
Csp6I	GTAC	1 cut(s)	176
CviQI	GTAC	1 cut(s)	176
DinI	GGCGCC	2 cut(s)	264, 358
DpnI	GATC	4 cut(s)	13, 272, 537, 548
DpnII	GATC	4 cut(s)	11, 270, 535, 546
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	339, 591
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	3 cut(s)	17, 115, 315
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	382
EgeI	GGCGCC	2 cut(s)	264, 358
EheI	GGCGCC	2 cut(s)	264, 358
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	494
FaiI	YATR	3 cut(s)	191, 221, 512
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	194, 628
FokI	GGATG	1 cut(s)	656
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	194, 628
GlaI	GCGC	3 cut(s)	233, 264, 358
GluI	GCNGC	2 cut(s)	194, 628
GsaI	CCCAGC	1 cut(s)	59
HaeII	RGCGCY	2 cut(s)	266, 360
HaeIII	GGCC	2 cut(s)	341, 593
HapII	CCGG	6 cut(s)	15, 266, 297, 397, 461, 524
HgaI	GACGC	2 cut(s)	170, 325
HhaI	GCGC	3 cut(s)	234, 265, 359
Hin1I	GRCGYC	2 cut(s)	263, 357
Hin6I	GCGC	3 cut(s)	232, 263, 357
HinP1I	GCGC	3 cut(s)	232, 263, 357
HinfI	GANTC	3 cut(s)	43, 402, 515
HpaII	CCGG	6 cut(s)	15, 266, 297, 397, 461, 524
HphI	GGTGA	3 cut(s)	59, 436, 451
Hpy188I	TCNGA	3 cut(s)	275, 407, 474
Hpy188III	TCNNGA	7 cut(s)	15, 40, 185, 199, 313, 397, 544
HpyAV	CCTTC	4 cut(s)	148, 157, 253, 316
HpyCH4III	ACNGT	2 cut(s)	252, 439
HpyCH4IV	ACGT	2 cut(s)	174, 216
HpyCH4V	TGCA	2 cut(s)	223, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpySE526I	ACGT	2 cut(s)	174, 216
Hsp92I	GRCGYC	2 cut(s)	263, 357
HspAI	GCGC	3 cut(s)	232, 263, 357
KasI	GGCGCC	2 cut(s)	262, 356
Kpn2I	TCCGGA	2 cut(s)	14, 396
Kzo9I	GATC	4 cut(s)	11, 270, 535, 546
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	3 cut(s)	30, 526, 624
Lsp1109I	GCAGC	1 cut(s)	180
MaeII	ACGT	2 cut(s)	174, 216
MaeIII	GTNAC	2 cut(s)	574, 583
MalI	GATC	4 cut(s)	13, 272, 537, 548
MbiI	CCGCTC	2 cut(s)	154, 627
MboI	GATC	4 cut(s)	11, 270, 535, 546
MboII	GAAGA	5 cut(s)	53, 56, 75, 447, 487
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	2 cut(s)	11, 546
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	8 cut(s)	32, 88, 117, 279, 361, 415, 468, 478
Mly113I	GGCGCC	2 cut(s)	263, 357
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	6 cut(s)	133, 139, 163, 526, 529, 601
MroI	TCCGGA	2 cut(s)	14, 396
MseI	TTAA	2 cut(s)	561, 658
MslI	CAYNNNNRTG	1 cut(s)	619
MspI	CCGG	6 cut(s)	15, 266, 297, 397, 461, 524
MunI	CAATTG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	229
NarI	GGCGCC	2 cut(s)	263, 357
NdeII	GATC	4 cut(s)	11, 270, 535, 546
NlaIV	GGNNCC	2 cut(s)	264, 358
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	574, 583
OliI	CACNNNNGTG	1 cut(s)	619
PciSI	GCTCTTC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	43, 402
PkrI	GCNGC	2 cut(s)	195, 629
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	2 cut(s)	266, 360
PpsI	GAGTC	1 cut(s)	523
PshAI	GACNNNNGTC	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	382
Psp1406I	AACGTT	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	264, 358
PsuI	RGATCY	2 cut(s)	11, 546
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	619
SacI	GAGCTC	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	561, 658
SatI	GCNGC	2 cut(s)	194, 628
Sau3AI	GATC	4 cut(s)	11, 270, 535, 546
SchI	GAGTC	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	8 cut(s)	61, 81, 149, 177, 219, 382, 531, 655
SfoI	GGCGCC	2 cut(s)	264, 358
SmiMI	CAYNNNNRTG	1 cut(s)	619
SmlI	CTYRAG	2 cut(s)	197, 530
SmoI	CTYRAG	2 cut(s)	197, 530
Sse9I	AATT	8 cut(s)	32, 88, 117, 279, 361, 415, 468, 478
SsiI	CCGC	6 cut(s)	28, 126, 152, 230, 300, 627
SspDI	GGCGCC	2 cut(s)	262, 356
SstI	GAGCTC	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	252, 439
TaiI	ACGT	2 cut(s)	177, 219
TaqI	TCGA	4 cut(s)	156, 257, 494, 543
TasI	AATT	8 cut(s)	32, 88, 117, 279, 361, 415, 468, 478
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	43, 402
Tru1I	TTAA	2 cut(s)	561, 658
Tru9I	TTAA	2 cut(s)	561, 658
TscAI	CASTG	1 cut(s)	621
TseFI	GTSAC	2 cut(s)	574, 583
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	2 cut(s)	574, 583
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	621
XapI	RAATTY	2 cut(s)	468, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.