ATMG00470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0018749
Physical Location & Seq
Reverse (-)
127475 .. 127843
369 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00470.1

Sequence Viewer

Length: 369 bp
ATGATACTCAATCTAGATACTAACATATTCAACCACGGATTAAGTCGACATAACATCCTCGCGTTCAGTCAGGGTTTTCCAATTGGATTACCTTGCCGGAATTGGATAGAAGTAGGGCTGCGCCTTCGGCTGCGCCTTCTGCTCGAGCTCGCCGTAGGAAACTTTCCCCAAGGTTTCAAGATCCATCTTTCAGGTTCCTTTCAAGCTGTAAGGCTCGCTCTGTTCTCAAGCTTTACTTCCTTGAGAACGGATGAACTCTTACTTATTGAGACCCGCCCCAGTTACCTCTCCTCTGTTCAAGGTTTGAAGTACTATGTTATTTTCATCGACAATTATTCACAAGGTTCTGTTGGATGTTCCCGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.78

Weight (kDa)

9.5

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018749)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07706 ATMG00470
fragaria_vesca FvH4_c3g00070
malus_domestica MD15G1346300.v1.1
rosa_laevigata RLG00000000100
rosa_multiflora Rmu_sc0004517.1_g000005
rosa_samantha Rh1DG235600 Rh1DG235700 Rh7AG405400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 46
AccII CGCG 1 cut(s) 62
AciI CCGC 1 cut(s) 274
AclWI GGATC 1 cut(s) 175
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 5 cut(s) 31, 178, 203, 299, 307
AluBI AGCT 3 cut(s) 148, 206, 231
AluI AGCT 3 cut(s) 148, 206, 231
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 118, 130
AspLEI GCGC 2 cut(s) 123, 135
AvaI CYCGRG 1 cut(s) 143
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 105, 117
BccI CCATC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 14
BisI GCNGC 2 cut(s) 119, 131
BlsI GCNGC 2 cut(s) 120, 132
BmcAI AGTACT 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 211, 262
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 34, 169
Bse1I ACTGG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 34, 169
BseGI GGATG 3 cut(s) 54, 256, 359
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 105, 117
Bsh1236I CGCG 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 274
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 34, 169
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 150, 216
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 3 cut(s) 54, 256, 359
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 2 cut(s) 123, 135
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 127, 139
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 105, 117
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 3 cut(s) 54, 256, 359
Cac8I GCNNGC 2 cut(s) 150, 216
CfoI GCGC 2 cut(s) 123, 135
Csp6I GTAC 1 cut(s) 310
CviJI RGCY 6 cut(s) 118, 130, 148, 206, 214, 231
CviKI_1 RGCY 6 cut(s) 118, 130, 148, 206, 214, 231
CviQI GTAC 1 cut(s) 310
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 169
FaiI YATR 3 cut(s) 26, 51, 315
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FauI CCCGC 1 cut(s) 281
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 119, 131
FokI GGATG 2 cut(s) 41, 263
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 119, 131
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 122, 134
GluI GCNGC 2 cut(s) 119, 131
HapII CCGG 1 cut(s) 97
HhaI GCGC 2 cut(s) 123, 135
Hin6I GCGC 2 cut(s) 121, 133
HinP1I GCGC 2 cut(s) 121, 133
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 229
HpaII CCGG 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 14, 178
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 134, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 139
HspAI GCGC 2 cut(s) 121, 133
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 4 cut(s) 56, 110, 177, 292
Lsp1109I GCAGC 2 cut(s) 105, 117
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 281, 362
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 3 cut(s) 81, 100, 331
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 3 cut(s) 68, 296, 301
MseI TTAA 1 cut(s) 41
MspI CCGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 81
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 127, 139
NdeII GATC 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PkrI GCNGC 2 cut(s) 120, 132
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 196
PspXI VCTCGAGB 1 cut(s) 143
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 119, 131
Sau3AI GATC 1 cut(s) 180
ScaI AGTACT 1 cut(s) 311
SduI GDGCHC 1 cut(s) 150
SetI ASST 9 cut(s) 94, 150, 175, 196, 208, 233, 288, 304, 346
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 3 cut(s) 143, 226, 241
SmoI CTYRAG 3 cut(s) 143, 226, 241
Sse9I AATT 3 cut(s) 81, 100, 331
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 150
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 3 cut(s) 46, 144, 327
TasI AATT 3 cut(s) 81, 100, 331
TatI WGTACW 1 cut(s) 309
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 2 cut(s) 118, 130
TspDTI ATGAA 2 cut(s) 267, 313
TspGWI ACGGA 2 cut(s) 51, 263
XbaI TCTAGA 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 1 cut(s) 14
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.