FvH4_c3g00070

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
contig_3
Physical Location & Seq
Reverse (-)
23431 .. 23631
201 bp
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UTR
Exon/CDS
Intron
FvH4_c3g00070.t1

Sequence Viewer

Length: 201 bp
ATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGGGATGGCATAGCCTTAAATAAAGTTAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.39

Weight (kDa)

10.26

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018749)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07706 ATMG00470
fragaria_vesca FvH4_c3g00070
malus_domestica MD15G1346300.v1.1
rosa_laevigata RLG00000000100
rosa_multiflora Rmu_sc0004517.1_g000005
rosa_samantha Rh1DG235600 Rh1DG235700 Rh7AG405400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 179
AclWI GGATC 2 cut(s) 10, 171
AgsI TTSAA 2 cut(s) 80, 164
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 10, 171
Aor13HI TCCGGA 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 150
AspA2I CCTAGG 1 cut(s) 107
AvrII CCTAGG 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 37
BanI GGYRCC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 38
BciVI GTATCC 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 108
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 1 cut(s) 31
BlnI CCTAGG 1 cut(s) 107
BlsI GCNGC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 179
Bse21I CCTNAGG 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 2 cut(s) 15, 176
BspEI TCCGGA 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 2 cut(s) 10, 171
BspT107I GGYRCC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 2 cut(s) 15, 176
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 18, 179
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 15, 176
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 15, 176
BstYI RGATCY 2 cut(s) 15, 176
Bsu36I CCTNAGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 49
CviJI RGCY 2 cut(s) 53, 93
CviKI_1 RGCY 2 cut(s) 53, 93
DdeI CTNAG 1 cut(s) 37
DpnI GATC 2 cut(s) 17, 178
DpnII GATC 2 cut(s) 15, 176
Eco130I CCWWGG 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 113
FaiI YATR 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 31
HapII CCGG 1 cut(s) 180
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 180, 189
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 29, 121
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 6
Kpn2I TCCGGA 1 cut(s) 179
Kzo9I GATC 2 cut(s) 15, 176
LpnPI CCDG 2 cut(s) 129, 193
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 6
MalI GATC 2 cut(s) 17, 178
MboI GATC 2 cut(s) 15, 176
MflI RGATCY 2 cut(s) 15, 176
MnlI CCTC 3 cut(s) 67, 78, 117
MroI TCCGGA 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 3 cut(s) 56, 66, 199
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 2 cut(s) 15, 176
NlaIV GGNNCC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 113
PsuI RGATCY 2 cut(s) 15, 176
SaqAI TTAA 3 cut(s) 56, 66, 199
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 15, 176
SetI ASST 5 cut(s) 9, 38, 78, 109, 199
SgeI CNNG 7 cut(s) 85, 96, 120, 128, 135, 167, 192
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 99
TaiI ACGT 1 cut(s) 9
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 56, 66, 199
Tru9I TTAA 3 cut(s) 56, 66, 199
TseI GCWGC 1 cut(s) 30
XmaJI CCTAGG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.