Rh1DG235600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018749
Physical Location & Seq
Reverse (-)
44947609 .. 44947926
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG235600.1

Sequence Viewer

Length: 318 bp
ATGCCACTCGAACCCAGAGCTAGCTGGTTTTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCATTGTTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATAAAGGAGGTAAGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.71

Weight (kDa)

10.35

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018749)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07706 ATMG00470
fragaria_vesca FvH4_c3g00070
malus_domestica MD15G1346300.v1.1
rosa_laevigata RLG00000000100
rosa_multiflora Rmu_sc0004517.1_g000005
rosa_samantha Rh1DG235600 Rh1DG235700 Rh7AG405400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 108
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 95, 100, 108
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 171
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 120
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 4 cut(s) 20, 24, 196, 232
AluI AGCT 4 cut(s) 20, 24, 196, 232
Alw26I GTCTC 2 cut(s) 173, 274
AlwI GGATC 1 cut(s) 231
AoxI GGCC 3 cut(s) 97, 171, 236
ApeKI GCWGC 2 cut(s) 52, 306
Asp718I GGTACC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 97, 237
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 173, 274
BfaI CTAG 4 cut(s) 21, 71, 138, 300
BisI GCNGC 3 cut(s) 53, 100, 307
BlsI GCNGC 3 cut(s) 54, 101, 308
Bme1390I CCNGG 2 cut(s) 221, 288
BmgT120I GGNCC 2 cut(s) 97, 237
BmiI GGNNCC 2 cut(s) 112, 239
BmrFI CCNGG 2 cut(s) 221, 288
BmtI GCTAGC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bpu10I CCTNAGC 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 67, 174
BseBI CCWGG 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 67, 174
BseXI GCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 99, 173, 238
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 173, 274
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 3 cut(s) 99, 173, 238
Bsp143I GATC 2 cut(s) 223, 247
BspACI CCGC 3 cut(s) 95, 100, 108
BspANI GGCC 3 cut(s) 99, 173, 238
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 112, 239
BspOI GCTAGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 108
BsrI ACTGG 2 cut(s) 67, 174
BssMI GATC 2 cut(s) 223, 247
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 22, 97
BstDEI CTNAG 2 cut(s) 233, 253
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 2 cut(s) 226, 250
BstMAI GTCTC 2 cut(s) 173, 274
BstMBI GATC 2 cut(s) 223, 247
BstMWI GCNNNNNNNGC 2 cut(s) 105, 283
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 219, 286
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 3 cut(s) 99, 173, 238
BtsIMutI CAGTG 2 cut(s) 181, 261
Cac8I GCNNGC 2 cut(s) 22, 97
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 97, 237
Csp6I GTAC 1 cut(s) 111
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 2 cut(s) 233, 253
DpnI GATC 2 cut(s) 225, 249
DpnII GATC 2 cut(s) 223, 247
EaeI YGGCCR 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 286
Esp3I CGTCTC 1 cut(s) 173
FaiI YATR 1 cut(s) 144
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 53, 100, 307
Fsp4HI GCNGC 3 cut(s) 53, 100, 307
FspBI CTAG 4 cut(s) 21, 71, 138, 300
GlaI GCGC 1 cut(s) 51
GluI GCNGC 3 cut(s) 53, 100, 307
HaeIII GGCC 3 cut(s) 99, 173, 238
HapII CCGG 1 cut(s) 221
HhaI GCGC 1 cut(s) 52
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 283
HpyF3I CTNAG 2 cut(s) 233, 253
HspAI GCGC 1 cut(s) 50
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 223, 247
LpnPI CCDG 9 cut(s) 10, 28, 48, 144, 187, 234, 242, 273, 300
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 4 cut(s) 21, 71, 138, 300
MalI GATC 2 cut(s) 225, 249
MbiI CCGCTC 1 cut(s) 108
MboI GATC 2 cut(s) 223, 247
MnlI CCTC 6 cut(s) 40, 114, 158, 202, 259, 284
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 221, 288
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 105, 283
NciI CCSGG 1 cut(s) 221
NdeII GATC 2 cut(s) 223, 247
NheI GCTAGC 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 112, 239
PkrI GCNGC 3 cut(s) 54, 101, 308
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 112, 239
PspPI GGNCC 2 cut(s) 97, 237
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SatI GCNGC 3 cut(s) 53, 100, 307
Sau3AI GATC 2 cut(s) 223, 247
Sau96I GGNCC 2 cut(s) 97, 237
ScrFI CCNGG 2 cut(s) 221, 288
SetI ASST 8 cut(s) 22, 26, 150, 170, 198, 234, 270, 295
SsiI CCGC 3 cut(s) 95, 100, 108
SspMI CTAG 4 cut(s) 21, 71, 138, 300
StyD4I CCNGG 2 cut(s) 219, 286
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 3 cut(s) 9, 119, 205
TauI GCSGC 1 cut(s) 102
TscAI CASTG 2 cut(s) 181, 261
TseI GCWGC 2 cut(s) 52, 306
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 2 cut(s) 181, 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 4 cut(s) 21, 71, 138, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.