RLG00000000100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0018749
Physical Location & Seq
Forward (+)
503293 .. 503726
434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000100

Sequence Viewer

Length: 339 bp
ATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATAAAGGAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.23

Weight (kDa)

9.78

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018749)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07706 ATMG00470
fragaria_vesca FvH4_c3g00070
malus_domestica MD15G1346300.v1.1
rosa_laevigata RLG00000000100
rosa_multiflora Rmu_sc0004517.1_g000005
rosa_samantha Rh1DG235600 Rh1DG235700 Rh7AG405400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 108
AccII CGCG 1 cut(s) 102
AciI CCGC 4 cut(s) 95, 100, 108, 333
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 171
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 120
AluBI AGCT 5 cut(s) 20, 24, 196, 232, 296
AluI AGCT 5 cut(s) 20, 24, 196, 232, 296
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 231
AoxI GGCC 3 cut(s) 97, 171, 236
ApeKI GCWGC 1 cut(s) 52
Asp718I GGTACC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 97, 237
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 64
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 4 cut(s) 21, 71, 138, 337
BisI GCNGC 2 cut(s) 53, 100
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 2 cut(s) 54, 101
Bme1390I CCNGG 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 97, 237
BmiI GGNNCC 2 cut(s) 112, 239
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 323
BmtI GCTAGC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bpu10I CCTNAGC 1 cut(s) 233
Bpu1102I GCTNAGC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 67, 174
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 67, 174
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 99, 173, 238
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 3 cut(s) 99, 173, 238
Bsp143I GATC 3 cut(s) 223, 247, 284
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 4 cut(s) 95, 100, 108, 333
BspANI GGCC 3 cut(s) 99, 173, 238
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 112, 239
BspOI GCTAGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 108
BsrI ACTGG 2 cut(s) 67, 174
BssMI GATC 3 cut(s) 223, 247, 284
Bst4CI ACNGT 2 cut(s) 86, 184
BstC8I GCNNGC 2 cut(s) 22, 97
BstDEI CTNAG 3 cut(s) 233, 253, 279
BstF5I GGATG 1 cut(s) 308
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 3 cut(s) 226, 250, 287
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 223, 247, 284
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 219
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 3 cut(s) 99, 173, 238
BtsCI GGATG 1 cut(s) 308
BtsIMutI CAGTG 3 cut(s) 82, 181, 261
Cac8I GCNNGC 2 cut(s) 22, 97
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 97, 237
Csp6I GTAC 1 cut(s) 111
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 3 cut(s) 233, 253, 279
DpnI GATC 3 cut(s) 225, 249, 286
DpnII GATC 3 cut(s) 223, 247, 284
EaeI YGGCCR 1 cut(s) 171
EciI GGCGGA 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 173
FaiI YATR 1 cut(s) 144
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 53, 100
FokI GGATG 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 53, 100
FspBI CTAG 4 cut(s) 21, 71, 138, 337
GlaI GCGC 1 cut(s) 51
GluI GCNGC 2 cut(s) 53, 100
HaeIII GGCC 3 cut(s) 99, 173, 238
HapII CCGG 1 cut(s) 221
HhaI GCGC 1 cut(s) 52
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 86, 184
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 3 cut(s) 233, 253, 279
HspAI GCGC 1 cut(s) 50
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 223, 247, 284
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 7 cut(s) 10, 28, 48, 144, 187, 234, 242
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 323
MaeI CTAG 4 cut(s) 21, 71, 138, 337
MalI GATC 3 cut(s) 225, 249, 286
MbiI CCGCTC 1 cut(s) 108
MboI GATC 3 cut(s) 223, 247, 284
MnlI CCTC 4 cut(s) 40, 114, 158, 202
Mph1103I ATGCAT 1 cut(s) 316
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 105
NciI CCSGG 1 cut(s) 221
NdeII GATC 3 cut(s) 223, 247, 284
NheI GCTAGC 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 112, 239
NsiI ATGCAT 1 cut(s) 316
PkrI GCNGC 2 cut(s) 54, 101
PspN4I GGNNCC 2 cut(s) 112, 239
PspPI GGNCC 2 cut(s) 97, 237
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SatI GCNGC 2 cut(s) 53, 100
Sau3AI GATC 3 cut(s) 223, 247, 284
Sau96I GGNCC 2 cut(s) 97, 237
ScrFI CCNGG 1 cut(s) 221
SetI ASST 7 cut(s) 22, 26, 150, 170, 198, 234, 298
SfaNI GCATC 1 cut(s) 323
SsiI CCGC 4 cut(s) 95, 100, 108, 333
SspMI CTAG 4 cut(s) 21, 71, 138, 337
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 86, 184
TaqI TCGA 3 cut(s) 9, 119, 205
TauI GCSGC 1 cut(s) 102
TscAI CASTG 3 cut(s) 89, 181, 261
TseI GCWGC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 188, 284
TspRI CASTG 3 cut(s) 89, 181, 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 4 cut(s) 21, 71, 138, 337
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.