Rh1DG235700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018749
Physical Location & Seq
Reverse (-)
44948595 .. 44951444
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG235700.1

Sequence Viewer

Length: 219 bp
ATGGCCGAGACAAAGGGTCGTGATCCCGCGAGGATCCTTCCATTTAGCAGCACCTTAGGGGATGGCATAGCCTTAAATAAAGTTAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGTGACGAAATGCTTCAGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.99

Weight (kDa)

10.55

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018749)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07706 ATMG00470
fragaria_vesca FvH4_c3g00070
malus_domestica MD15G1346300.v1.1
rosa_laevigata RLG00000000100
rosa_multiflora Rmu_sc0004517.1_g000005
rosa_samantha Rh1DG235600 Rh1DG235700 Rh7AG405400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AccII CGCG 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 1 cut(s) 27
AclWI GGATC 4 cut(s) 17, 28, 41, 189
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 98, 182
AhdI GACNNNNNGTC 1 cut(s) 15
Alw26I GTCTC 2 cut(s) 2, 131
AlwI GGATC 4 cut(s) 17, 28, 41, 189
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 168
AspA2I CCTAGG 1 cut(s) 125
AvrII CCTAGG 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 55
BamHI GGATCC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 56
BciVI GTATCC 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 2, 131
BfaI CTAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 114
BisI GCNGC 1 cut(s) 49
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 1 cut(s) 50
BmeRI GACNNNNNGTC 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 35, 131
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 198
BsmAI GTCTC 2 cut(s) 2, 131
BsmBI CGTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 3 cut(s) 22, 33, 194
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 197
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 35, 131
BspPI GGATC 4 cut(s) 17, 28, 41, 189
BspT107I GGYRCC 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 3 cut(s) 22, 33, 194
BssT1I CCWWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 3 cut(s) 25, 36, 197
BstMAI GTCTC 2 cut(s) 2, 131
BstMBI GATC 3 cut(s) 22, 33, 194
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 33, 194
BstYI RGATCY 2 cut(s) 33, 194
Bsu36I CCTNAGG 1 cut(s) 55
BsuI GTATCC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 67
CviJI RGCY 3 cut(s) 5, 71, 111
CviKI_1 RGCY 3 cut(s) 5, 71, 111
DdeI CTNAG 1 cut(s) 55
DpnI GATC 3 cut(s) 24, 35, 196
DpnII GATC 3 cut(s) 22, 33, 194
DriI GACNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
Esp3I CGTCTC 1 cut(s) 131
FaiI YATR 1 cut(s) 68
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 198
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 198
Hpy188III TCNNGA 3 cut(s) 20, 198, 207
HpyAV CCTTC 2 cut(s) 47, 139
HpyCH4III ACNGT 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 55
Kpn2I TCCGGA 1 cut(s) 197
Kzo9I GATC 3 cut(s) 22, 33, 194
LpnPI CCDG 3 cut(s) 147, 158, 211
Lsp1109I GCAGC 1 cut(s) 60
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 158
MalI GATC 3 cut(s) 24, 35, 196
MboI GATC 3 cut(s) 22, 33, 194
MflI RGATCY 2 cut(s) 33, 194
MnlI CCTC 4 cut(s) 24, 85, 96, 135
MroI TCCGGA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 3 cut(s) 74, 84, 217
MspI CCGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 29
NdeII GATC 3 cut(s) 22, 33, 194
NlaIV GGNNCC 2 cut(s) 35, 131
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 35, 131
PsuI RGATCY 2 cut(s) 33, 194
SaqAI TTAA 3 cut(s) 74, 84, 217
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 3 cut(s) 22, 33, 194
SetI ASST 4 cut(s) 56, 96, 127, 217
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 3 cut(s) 74, 84, 217
Tru9I TTAA 3 cut(s) 74, 84, 217
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 158
XmaJI CCTAGG 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.