MD15G1346300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0018749
Physical Location & Seq
Forward (+)
40749312 .. 40749508
197 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1346300.v1.1.491

Sequence Viewer

Length: 180 bp
ATGATTTCTACAGACGCGAAACTTTGCCGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAGCTTGCGCTCTGACCCGAGTAGCATGGGACATGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTACATACTGGGTGATCGATAGTGAAGTAGTACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.38

Weight (kDa)

4.75

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018749)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07706 ATMG00470
fragaria_vesca FvH4_c3g00070
malus_domestica MD15G1346300.v1.1
rosa_laevigata RLG00000000100
rosa_multiflora Rmu_sc0004517.1_g000005
rosa_samantha Rh1DG235600 Rh1DG235700 Rh7AG405400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 28
AfaI GTAC 1 cut(s) 174
AflIII ACRYGT 1 cut(s) 100
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 85
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 1 cut(s) 128
BccI CCATC 1 cut(s) 32
BfaI CTAG 2 cut(s) 35, 69
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 160
Bsa29I ATCGAT 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 50, 155
BseCI ATCGAT 1 cut(s) 159
BseNI ACTGG 2 cut(s) 50, 155
Bsh1236I CGCG 1 cut(s) 17
BshVI ATCGAT 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 85
Bsp143I GATC 1 cut(s) 156
BspACI CCGC 1 cut(s) 28
BspDI ATCGAT 1 cut(s) 159
BspFNI CGCG 1 cut(s) 17
BsrI ACTGG 2 cut(s) 50, 155
BssMI GATC 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 74
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 159
BsuTUI ATCGAT 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 159
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 94, 101
CviJI RGCY 3 cut(s) 56, 72, 143
CviKI_1 RGCY 3 cut(s) 56, 72, 143
CviQI GTAC 1 cut(s) 173
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 85
FaeI CATG 2 cut(s) 97, 104
FaiI YATR 3 cut(s) 95, 102, 148
FaqI GGGAC 1 cut(s) 111
FatI CATG 2 cut(s) 93, 100
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 2 cut(s) 35, 69
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 28
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 78
Hin1II CATG 2 cut(s) 97, 104
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HinfI GANTC 3 cut(s) 46, 107, 118
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
Hsp92II CATG 2 cut(s) 97, 104
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 2 cut(s) 63, 136
LweI GCATC 1 cut(s) 72
MaeI CTAG 2 cut(s) 35, 69
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 55
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 69
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 97, 104
NspI RCATGY 1 cut(s) 104
PciI ACATGT 1 cut(s) 100
PfeI GAWTC 2 cut(s) 107, 118
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PscI ACATGT 1 cut(s) 100
PspPI GGNCC 1 cut(s) 128
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 55
SetI ASST 2 cut(s) 74, 136
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 128
SsiI CCGC 1 cut(s) 28
SspMI CTAG 2 cut(s) 35, 69
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 159
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 2 cut(s) 107, 118
VpaK11BI GGWCC 1 cut(s) 128
XceI RCATGY 1 cut(s) 104
XspI CTAG 2 cut(s) 35, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.