ATMG00660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017911
Physical Location & Seq
Reverse (-)
190104 .. 190553
450 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00660.1

Sequence Viewer

Length: 450 bp
ATGAGGCCTTTTGGCGAAGCCAAGTTTCTTTCGGGCCACCAAACCCTGCAACTGATGAGAAAGAAGGCCCTATGGAGTAAAGGGAAGCGTGTACGTTGTCACACTCCCTGCCTTCCAAAGGTGCCTAGAGGACGGGCCAGACGCAGCGGAGCGACAACCCGGGAGCAGAGTCCCCACCGGCAGGGGGACAGGAGACGGCCATCTCAAGGCACATCACGACCTACAGGTAAGACCGGCGAGACCAGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATAGTACCTGCAGCCCCACGGACTTCATATTCCTCATTTTAGAAAGCGGAGGGAAGGGATCTCTTTTCTGCAACGAAAAAAAAAAACGGAGCAGATTTGACTCGGCACAACCTAACGATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGATCTCTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.7

Weight (kDa)

10.88

Isoelectric Point (pI)

64.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017911)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00660
rosa_chinensis RchiOBHm_Chr7g0235961 RchiOBHm_MTg0499091
rosa_laevigata RLG00000000275 RLG00000000277 RLG00000000406 RLG00000000427 RLG00000000481
rosa_roxburghii Rroxscaffold_2G00119470
rosa_samantha Rh3BG350300 Rh6BG169000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 2 cut(s) 147, 324
AclWI GGATC 3 cut(s) 268, 281, 343
AcoI YGGCCR 1 cut(s) 197
AfaI GTAC 2 cut(s) 93, 283
AfiI CCNNNNNNNGG 4 cut(s) 118, 181, 184, 206
AjnI CCWGG 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 187, 233
AlwI GGATC 3 cut(s) 268, 281, 343
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 5 cut(s) 5, 34, 66, 135, 197
ApeKI GCWGC 2 cut(s) 144, 288
AspS9I GGNCC 3 cut(s) 34, 67, 135
AsuC2I CCSGG 2 cut(s) 160, 161
AvaI CYCGRG 1 cut(s) 159
BamHI GGATCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 156, 300
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 244
BcnI CCSGG 2 cut(s) 160, 161
BcoDI GTCTC 2 cut(s) 187, 233
BfaI CTAG 3 cut(s) 126, 422, 435
BfmI CTRYAG 2 cut(s) 222, 286
BfuAI ACCTGC 1 cut(s) 293
BglII AGATCT 1 cut(s) 437
BisI GCNGC 2 cut(s) 145, 289
BlsI GCNGC 2 cut(s) 146, 290
Bme1390I CCNGG 3 cut(s) 160, 161, 244
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 3 cut(s) 34, 67, 135
BmiI GGNNCC 2 cut(s) 123, 275
BmrFI CCNGG 3 cut(s) 160, 161, 244
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 2 cut(s) 160, 161
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 159, 243, 294
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 181, 184, 206
Bse118I RCCGGY 2 cut(s) 177, 233
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 3 cut(s) 159, 243, 294
BseGI GGATG 1 cut(s) 398
BseLI CCNNNNNNNGG 4 cut(s) 118, 181, 184, 206
BseXI GCAGC 2 cut(s) 156, 300
BshFI GGCC 5 cut(s) 7, 36, 68, 137, 199
BshNI GGYRCC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 3 cut(s) 160, 178, 234
BslFI GGGAC 2 cut(s) 156, 200
BslI CCNNNNNNNGG 4 cut(s) 118, 181, 184, 206
BsmAI GTCTC 2 cut(s) 187, 233
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 156, 200
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 5 cut(s) 7, 36, 68, 137, 199
Bso31I GGTCTC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 159
Bsp143I GATC 4 cut(s) 273, 335, 412, 437
BspACI CCGC 2 cut(s) 147, 324
BspANI GGCC 5 cut(s) 7, 36, 68, 137, 199
BspLI GGNNCC 2 cut(s) 123, 275
BspMAI CTGCAG 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 3 cut(s) 268, 281, 343
BspT107I GGYRCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 233
BsrFI RCCGGY 2 cut(s) 177, 233
BssAI RCCGGY 2 cut(s) 177, 233
BssECI CCNNGG 3 cut(s) 159, 243, 294
BssMI GATC 4 cut(s) 273, 335, 412, 437
Bst2UI CCWGG 1 cut(s) 244
BstDSI CCRYGG 1 cut(s) 294
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 398
BstKTI GATC 4 cut(s) 276, 338, 415, 440
BstMAI GTCTC 2 cut(s) 187, 233
BstMBI GATC 4 cut(s) 273, 335, 412, 437
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 3 cut(s) 158, 159, 242
BstSFI CTRYAG 2 cut(s) 222, 286
BstV1I GCAGC 2 cut(s) 156, 300
BstX2I RGATCY 3 cut(s) 273, 335, 437
BstYI RGATCY 3 cut(s) 273, 335, 437
BsuRI GGCC 5 cut(s) 7, 36, 68, 137, 199
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 398
BveI ACCTGC 1 cut(s) 293
Cfr10I RCCGGY 2 cut(s) 177, 233
Cfr13I GGNCC 3 cut(s) 34, 67, 135
Cfr9I CCCGGG 1 cut(s) 159
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 92, 282
CviJI RGCY 7 cut(s) 7, 20, 36, 68, 137, 199, 291
CviKI_1 RGCY 7 cut(s) 7, 20, 36, 68, 137, 199, 291
CviQI GTAC 2 cut(s) 92, 282
DpnI GATC 4 cut(s) 275, 337, 414, 439
DpnII GATC 4 cut(s) 273, 335, 412, 437
EaeI YGGCCR 1 cut(s) 197
Eco147I AGGCCT 1 cut(s) 7
Eco31I GGTCTC 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 187
FaiI YATR 3 cut(s) 73, 279, 305
FaqI GGGAC 2 cut(s) 156, 200
Fnu4HI GCNGC 2 cut(s) 145, 289
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 145, 289
FspBI CTAG 3 cut(s) 126, 422, 435
GluI GCNGC 2 cut(s) 145, 289
HaeIII GGCC 5 cut(s) 7, 36, 68, 137, 199
HapII CCGG 3 cut(s) 160, 178, 234
HgaI GACGC 1 cut(s) 150
HinfI GANTC 3 cut(s) 169, 265, 377
HpaII CCGG 3 cut(s) 160, 178, 234
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 4 cut(s) 58, 122, 242, 325
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 49, 288, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpySE526I ACGT 1 cut(s) 94
Kzo9I GATC 4 cut(s) 273, 335, 412, 437
LmnI GCTCC 3 cut(s) 149, 163, 366
Lsp1109I GCAGC 2 cut(s) 156, 300
MaeI CTAG 3 cut(s) 126, 422, 435
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 98
MalI GATC 4 cut(s) 275, 337, 414, 439
MboI GATC 4 cut(s) 273, 335, 412, 437
MflI RGATCY 3 cut(s) 273, 335, 437
MlyI GAGTC 3 cut(s) 178, 274, 371
MnlI CCTC 4 cut(s) 122, 264, 320, 320
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 3 cut(s) 160, 178, 234
MspR9I CCNGG 3 cut(s) 160, 161, 244
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 426
NciI CCSGG 2 cut(s) 160, 161
NdeII GATC 4 cut(s) 273, 335, 412, 437
NlaIV GGNNCC 2 cut(s) 123, 275
NmeAIII GCCGAG 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 98
PceI AGGCCT 1 cut(s) 7
PctI GAATGC 1 cut(s) 431
PkrI GCNGC 2 cut(s) 146, 290
PleI GAGTC 3 cut(s) 177, 273, 371
PpsI GAGTC 3 cut(s) 177, 273, 371
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 123, 275
PspPI GGNCC 3 cut(s) 34, 67, 135
PstI CTGCAG 1 cut(s) 290
PsuI RGATCY 3 cut(s) 273, 335, 437
RsaI GTAC 2 cut(s) 93, 283
RsaNI GTAC 2 cut(s) 92, 282
SatI GCNGC 2 cut(s) 145, 289
Sau3AI GATC 4 cut(s) 273, 335, 412, 437
Sau96I GGNCC 3 cut(s) 34, 67, 135
SchI GAGTC 3 cut(s) 178, 274, 371
ScrFI CCNGG 3 cut(s) 160, 161, 244
SetI ASST 6 cut(s) 97, 123, 223, 229, 287, 391
SfcI CTRYAG 2 cut(s) 222, 286
SmaI CCCGGG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 2 cut(s) 147, 324
SspMI CTAG 3 cut(s) 126, 422, 435
StuI AGGCCT 1 cut(s) 7
StyD4I CCNGG 3 cut(s) 158, 159, 242
TaiI ACGT 1 cut(s) 97
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 2 cut(s) 144, 288
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 292
TspGWI ACGGA 2 cut(s) 311, 379
TspMI CCCGGG 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 116
XmaI CCCGGG 1 cut(s) 159
XspI CTAG 3 cut(s) 126, 422, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.