Rroxscaffold_2G00119470

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017911
Physical Location & Seq
Forward (+)
51303820 .. 51305287
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119470.1

Sequence Viewer

Length: 705 bp
ATGAAGAGGGGAAACATAGCATGTCACAAGAGCGAGGCGAGGTTTGGAACCCTACTGCGAGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGTTAATTTCGGGCCACCAAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCGTGTACGTTGTCACACTCCCTGCCTTCCAAAGTTCCGTAGCAGTGTCCAATCCTGCTTCTTTCTTATTTTGTGTGTGGGTGGGGGGCAAGCTCTTCCGAGCCCCTCCGACCCATCAAGCTCGTCCTCGTGGAGGGAGGATTCGTTTGGAATAGACGTGCTATTAGAGCCCTTTTCCGAAACGGAATCCGAAAATCAGGAGAGCAATTCCCTCCAGTATGACATCCCAAGAGCCGCCCGCGATGAGGCGGGCCCCTCCCATGAGTGGGTGCTTGCTAACGAGCGGTTTTCCGCTCTACTGGCACGGCACCTCCAAAAGCACGCGGAAAAGTCGGCAGTTGTGGCTAGGTATCCGCAGCTCCGTGAGGCAGATTTCCATCATTTGGGCCAAAAAATGGCCCAAAGCTTTGATACTGATGTGAAATCTCCCTCCGAGATTGAAGCCCTTGCGGCCTCTGAAGAGTTACGGACCTACAAGAAATCCAGAAGCTCGTTAGAGAGCTTCTTGGATAGCTACTATTCTGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.29

Weight (kDa)

6.67

Isoelectric Point (pI)

74.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017911)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00660
rosa_chinensis RchiOBHm_Chr7g0235961 RchiOBHm_MTg0499091
rosa_laevigata RLG00000000275 RLG00000000277 RLG00000000406 RLG00000000427 RLG00000000481
rosa_roxburghii Rroxscaffold_2G00119470
rosa_samantha Rh3BG350300 Rh6BG169000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 480
AccB7I CCANNNNNTGG 2 cut(s) 556, 568
AccBSI CCGCTC 2 cut(s) 457, 467
AccII CGCG 3 cut(s) 74, 414, 497
AciI CCGC 8 cut(s) 408, 412, 422, 457, 465, 497, 527, 623
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 6 cut(s) 306, 418, 438, 439, 556, 568
AgsI TTSAA 1 cut(s) 614
AjiI CACGTC 1 cut(s) 331
AluBI AGCT 7 cut(s) 266, 294, 532, 579, 663, 675, 687
AluI AGCT 7 cut(s) 266, 294, 532, 579, 663, 675, 687
AoxI GGCC 7 cut(s) 96, 125, 153, 424, 559, 570, 624
ApaI GGGCCC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 529
AspS9I GGNCC 7 cut(s) 125, 154, 424, 425, 559, 571, 642
AsuC2I CCSGG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 642
BaeGI GKGCMC 1 cut(s) 428
BaeI ACNNNNGTAYC 2 cut(s) 576, 609
BanI GGYRCC 1 cut(s) 480
BanII GRGCYC 3 cut(s) 278, 345, 428
BauI CACGAG 1 cut(s) 301
BbvI GCAGC 1 cut(s) 541
BccI CCATC 2 cut(s) 295, 558
BceAI ACGGC 1 cut(s) 494
BciVI GTATCC 1 cut(s) 534
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 2 cut(s) 87, 519
BfuI GTATCC 1 cut(s) 534
BglI GCCNNNNNGGC 1 cut(s) 623
BisI GCNGC 3 cut(s) 408, 530, 624
BlsI GCNGC 3 cut(s) 409, 531, 625
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 642
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 7 cut(s) 125, 154, 424, 425, 559, 571, 642
BmiI GGNNCC 4 cut(s) 49, 426, 427, 482
BmrFI CCNGG 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 67
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 468, 498
Bsc4I CCNNNNNNNGG 6 cut(s) 306, 418, 438, 439, 556, 568
Bse1I ACTGG 2 cut(s) 388, 477
Bse8I GATNNNNATC 1 cut(s) 549
BseGI GGATG 1 cut(s) 396
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 6 cut(s) 306, 418, 438, 439, 556, 568
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 2 cut(s) 388, 477
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 1 cut(s) 541
Bsh1236I CGCG 3 cut(s) 74, 414, 497
BshFI GGCC 7 cut(s) 98, 127, 155, 426, 561, 572, 626
BshNI GGYRCC 1 cut(s) 480
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 6 cut(s) 306, 418, 438, 439, 556, 568
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 7 cut(s) 98, 127, 155, 426, 561, 572, 626
Bsp120I GGGCCC 1 cut(s) 424
Bsp1286I GDGCHC 3 cut(s) 278, 345, 428
Bsp68I TCGCGA 1 cut(s) 74
BspACI CCGC 8 cut(s) 408, 412, 422, 457, 465, 497, 527, 623
BspANI GGCC 7 cut(s) 98, 127, 155, 426, 561, 572, 626
BspCNI CTCAG 1 cut(s) 688
BspFNI CGCG 3 cut(s) 74, 414, 497
BspLI GGNNCC 4 cut(s) 49, 426, 427, 482
BspQI GCTCTTC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 480
BsrBI CCGCTC 2 cut(s) 457, 467
BsrI ACTGG 2 cut(s) 388, 477
BssNI GRCGYC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 301
Bst6I CTCTTC 2 cut(s) 273, 627
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 6 cut(s) 76, 264, 412, 424, 447, 495
BstDEI CTNAG 1 cut(s) 696
BstENI CCTNNNNNAGG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 396
BstFNI CGCG 3 cut(s) 74, 414, 497
BstMWI GCNNNNNNNGC 6 cut(s) 75, 80, 340, 473, 515, 623
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 428
BstUI CGCG 3 cut(s) 74, 414, 497
BstV1I GCAGC 1 cut(s) 541
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 7 cut(s) 98, 127, 155, 426, 561, 572, 626
BtgZI GCGATG 1 cut(s) 429
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
BtuMI TCGCGA 1 cut(s) 74
Cac8I GCNNGC 6 cut(s) 76, 264, 412, 424, 447, 495
Cfr13I GGNCC 7 cut(s) 125, 154, 424, 425, 559, 571, 642
CseI GACGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 179
CviAII CATG 2 cut(s) 21, 434
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 273, 627
EarI CTCTTC 2 cut(s) 273, 627
Eco147I AGGCCT 1 cut(s) 98
Eco24I GRGCYC 3 cut(s) 278, 345, 428
Eco47I GGWCC 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 651
EcoNI CCTNNNNNAGG 1 cut(s) 304
EcoO109I RGGNCCY 2 cut(s) 154, 425
EcoT38I GRGCYC 3 cut(s) 278, 345, 428
FaeI CATG 2 cut(s) 24, 437
FaiI YATR 5 cut(s) 17, 22, 160, 393, 435
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 20, 433
FauI CCCGC 2 cut(s) 415, 419
Fnu4HI GCNGC 3 cut(s) 408, 530, 624
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 3 cut(s) 278, 345, 428
Fsp4HI GCNGC 3 cut(s) 408, 530, 624
FspBI CTAG 2 cut(s) 87, 519
GluI GCNGC 3 cut(s) 408, 530, 624
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 7 cut(s) 98, 127, 155, 426, 561, 572, 626
HapII CCGG 1 cut(s) 79
HgaI GACGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 2 cut(s) 24, 437
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 2 cut(s) 314, 359
HpaII CCGG 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 7 cut(s) 273, 283, 352, 364, 607, 631, 697
Hpy188III TCNNGA 4 cut(s) 73, 87, 371, 657
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 145, 209
HpyCH4IV ACGT 2 cut(s) 181, 330
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 80, 340, 473, 515, 623
HpyF3I CTNAG 1 cut(s) 696
HpySE526I ACGT 2 cut(s) 181, 330
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 24, 437
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 537
LpnPI CCDG 8 cut(s) 92, 150, 208, 241, 356, 401, 458, 670
Lsp1109I GCAGC 1 cut(s) 541
MaeI CTAG 2 cut(s) 87, 519
MaeII ACGT 2 cut(s) 181, 330
MaeIII GTNAC 3 cut(s) 23, 185, 636
MbiI CCGCTC 2 cut(s) 457, 467
MboII GAAGA 3 cut(s) 16, 260, 644
MhlI GDGCHC 3 cut(s) 278, 345, 428
MluCI AATT 2 cut(s) 118, 379
MmeI TCCRAC 1 cut(s) 306
MseI TTAA 1 cut(s) 117
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 80
MvnI CGCG 3 cut(s) 74, 414, 497
MwoI GCNNNNNNNGC 6 cut(s) 75, 80, 340, 473, 515, 623
NciI CCSGG 1 cut(s) 80
NlaIII CATG 2 cut(s) 24, 437
NlaIV GGNNCC 4 cut(s) 49, 426, 427, 482
NmuCI GTSAC 2 cut(s) 23, 185
NruI TCGCGA 1 cut(s) 74
NspI RCATGY 1 cut(s) 24
PceI AGGCCT 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 314, 359
PflMI CCANNNNNTGG 2 cut(s) 556, 568
PkrI GCNGC 3 cut(s) 409, 531, 625
PspN4I GGNNCC 4 cut(s) 49, 426, 427, 482
PspOMI GGGCCC 1 cut(s) 424
PspPI GGNCC 7 cut(s) 125, 154, 424, 425, 559, 571, 642
RruI TCGCGA 1 cut(s) 74
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 3 cut(s) 408, 530, 624
Sau96I GGNCC 7 cut(s) 125, 154, 424, 425, 559, 571, 642
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 3 cut(s) 278, 345, 428
SinI GGWCC 1 cut(s) 642
Sse9I AATT 2 cut(s) 118, 379
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 8 cut(s) 408, 412, 422, 457, 465, 497, 527, 623
SspMI CTAG 2 cut(s) 87, 519
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 78
TaiI ACGT 2 cut(s) 184, 333
TasI AATT 2 cut(s) 118, 379
TauI GCSGC 2 cut(s) 410, 626
TfiI GAWTC 2 cut(s) 314, 359
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 23, 185
TseI GCWGC 1 cut(s) 529
Tsp45I GTSAC 2 cut(s) 23, 185
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 4 cut(s) 200, 371, 524, 655
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 2 cut(s) 556, 568
VpaK11BI GGWCC 1 cut(s) 642
XagI CCTNNNNNAGG 1 cut(s) 304
XbaI TCTAGA 1 cut(s) 86
XceI RCATGY 1 cut(s) 24
XspI CTAG 2 cut(s) 87, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.