Rh6BG169000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017911
Physical Location & Seq
Reverse (-)
27854052 .. 27855524
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG169000.1

Sequence Viewer

Length: 336 bp
ATGGGCCTTAGAACTTTCCCTAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCGTGTACGTTGTCACACTCCCTGCCTTCCAAAGGTGCCTAAAGGACGGGCCAAACGCAGCAGAGCGACGACCCGGGAGCGGATTCCCCACCGGCAGGGGGACAGGAGACGGCCATCTCGAGGCACATCACGACCTACAGGCAACACCGGCGAGACCCGGGGAGGCAACCTGATCGGGAGTCAGAAGATCCATAGTACCCGCAGCCCCACGGACTTCATTTATTTATTATCCATAGTACTTGGTAATTGGTATTCGTTGAATATGGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.54

Weight (kDa)

11.56

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017911)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00660
rosa_chinensis RchiOBHm_Chr7g0235961 RchiOBHm_MTg0499091
rosa_laevigata RLG00000000275 RLG00000000277 RLG00000000406 RLG00000000427 RLG00000000481
rosa_roxburghii Rroxscaffold_2G00119470
rosa_samantha Rh3BG350300 Rh6BG169000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 142
AciI CCGC 2 cut(s) 142, 262
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 330
AfaI GTAC 3 cut(s) 69, 259, 300
AfiI CCNNNNNNNGG 5 cut(s) 94, 141, 157, 160, 182
AgsI TTSAA 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 163, 209
AlwI GGATC 1 cut(s) 244
Ama87I CYCGRG 3 cut(s) 135, 180, 219
AoxI GGCC 4 cut(s) 4, 42, 111, 173
ApeKI GCWGC 2 cut(s) 120, 264
ApoI RAATTY 1 cut(s) 330
AspS9I GGNCC 3 cut(s) 4, 43, 111
AsuC2I CCSGG 4 cut(s) 136, 137, 220, 221
AvaI CYCGRG 3 cut(s) 135, 180, 219
BanI GGYRCC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 132, 276
BccI CCATC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BcnI CCSGG 4 cut(s) 136, 137, 220, 221
BcoDI GTCTC 2 cut(s) 163, 209
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 121, 265
BlsI GCNGC 2 cut(s) 122, 266
BmcAI AGTACT 1 cut(s) 300
Bme1390I CCNGG 4 cut(s) 136, 137, 220, 221
BmeT110I CYCGRG 3 cut(s) 135, 180, 219
BmgT120I GGNCC 3 cut(s) 4, 43, 111
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 4 cut(s) 136, 137, 220, 221
BpuMI CCSGG 4 cut(s) 136, 137, 220, 221
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 4 cut(s) 135, 219, 220, 270
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 141, 157, 160, 182
Bse118I RCCGGY 2 cut(s) 153, 209
BseDI CCNNGG 4 cut(s) 135, 219, 220, 270
BseLI CCNNNNNNNGG 5 cut(s) 94, 141, 157, 160, 182
BseXI GCAGC 2 cut(s) 132, 276
BshFI GGCC 4 cut(s) 6, 44, 113, 175
BshNI GGYRCC 1 cut(s) 97
BsiHKCI CYCGRG 3 cut(s) 135, 180, 219
BsiSI CCGG 4 cut(s) 136, 154, 210, 220
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 5 cut(s) 94, 141, 157, 160, 182
BsmAI GTCTC 2 cut(s) 163, 209
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 4 cut(s) 6, 44, 113, 175
Bso31I GGTCTC 1 cut(s) 209
BsoBI CYCGRG 3 cut(s) 135, 180, 219
Bsp143I GATC 2 cut(s) 234, 249
BspACI CCGC 2 cut(s) 142, 262
BspANI GGCC 4 cut(s) 6, 44, 113, 175
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 142
BsrFI RCCGGY 2 cut(s) 153, 209
BssAI RCCGGY 2 cut(s) 153, 209
BssECI CCNNGG 4 cut(s) 135, 219, 220, 270
BssMI GATC 2 cut(s) 234, 249
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 92
BstKTI GATC 2 cut(s) 237, 252
BstMAI GTCTC 2 cut(s) 163, 209
BstMBI GATC 2 cut(s) 234, 249
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSCI CCNGG 4 cut(s) 134, 135, 218, 219
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 132, 276
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BsuRI GGCC 4 cut(s) 6, 44, 113, 175
BtgI CCRYGG 1 cut(s) 270
Cfr10I RCCGGY 2 cut(s) 153, 209
Cfr13I GGNCC 3 cut(s) 4, 43, 111
Cfr9I CCCGGG 2 cut(s) 135, 219
Csp6I GTAC 3 cut(s) 68, 258, 299
CviJI RGCY 5 cut(s) 6, 44, 113, 175, 267
CviKI_1 RGCY 5 cut(s) 6, 44, 113, 175, 267
CviQI GTAC 3 cut(s) 68, 258, 299
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 236, 251
DpnII GATC 2 cut(s) 234, 249
EaeI YGGCCR 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 209
Eco88I CYCGRG 3 cut(s) 135, 180, 219
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 163
FaiI YATR 4 cut(s) 49, 255, 296, 326
FaqI GGGAC 1 cut(s) 176
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 2 cut(s) 121, 265
Fsp4HI GCNGC 2 cut(s) 121, 265
GluI GCNGC 2 cut(s) 121, 265
HaeIII GGCC 4 cut(s) 6, 44, 113, 175
HapII CCGG 4 cut(s) 136, 154, 210, 220
HinfI GANTC 2 cut(s) 145, 241
HpaII CCGG 4 cut(s) 136, 154, 210, 220
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 3 cut(s) 180, 192, 238
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 34, 98
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 70
Kzo9I GATC 2 cut(s) 234, 249
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 2 cut(s) 132, 276
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 236, 251
MbiI CCGCTC 1 cut(s) 142
MboI GATC 2 cut(s) 234, 249
MboII GAAGA 1 cut(s) 259
MflI RGATCY 1 cut(s) 249
MluCI AATT 2 cut(s) 307, 330
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 2 cut(s) 176, 218
MseI TTAA 1 cut(s) 334
MspI CCGG 4 cut(s) 136, 154, 210, 220
MspR9I CCNGG 4 cut(s) 136, 137, 220, 221
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 4 cut(s) 136, 137, 220, 221
NdeII GATC 2 cut(s) 234, 249
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 74
PaeR7I CTCGAG 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 122, 266
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 4, 43, 111
PsuI RGATCY 1 cut(s) 249
RsaI GTAC 3 cut(s) 69, 259, 300
RsaNI GTAC 3 cut(s) 68, 258, 299
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 2 cut(s) 121, 265
Sau3AI GATC 2 cut(s) 234, 249
Sau96I GGNCC 3 cut(s) 4, 43, 111
ScaI AGTACT 1 cut(s) 300
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 4 cut(s) 136, 137, 220, 221
SetI ASST 4 cut(s) 73, 99, 199, 234
SfcI CTRYAG 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 180
SgrAI CRCCGGYG 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 180
SmaI CCCGGG 2 cut(s) 137, 221
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 2 cut(s) 307, 330
SsiI CCGC 2 cut(s) 142, 262
StyD4I CCNGG 4 cut(s) 134, 135, 218, 219
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 181
TasI AATT 2 cut(s) 307, 330
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 120, 264
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 268
TspGWI ACGGA 1 cut(s) 287
TspMI CCCGGG 2 cut(s) 135, 219
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 1 cut(s) 330
XhoI CTCGAG 1 cut(s) 180
XmaI CCCGGG 2 cut(s) 135, 219
ZrmI AGTACT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.