RLG00000000406

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017911
Physical Location & Seq
Forward (+)
851840 .. 852385
546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000406

Sequence Viewer

Length: 408 bp
ATGAAGAGGGGAAACATAGCATGTCACAAGAGCGAGGCGAGGTTTGGAACCCTACTGCGAGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGTTAATTTCGGGCCACCAAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCGTGTACGTTGTCACACTCCCTGCCTTCCAAAGGTGCCTAAAGGACGGGCCAGACGCAGCAGAGCGACGACCCGGGAGCGGATTCCCCACCGGCAGGGGGACAGGAGACGGCCATCTCGAGGCACATCACGACCTACAGGCAACACCGGCGAGACCCGGGGAGGCAACCCGATCGGGAGTCAGAAGATCCATAGTACCCGCAGCCCCACGGACTTCATATTCATCATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.25

Weight (kDa)

11.82

Isoelectric Point (pI)

67.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017911)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00660
rosa_chinensis RchiOBHm_Chr7g0235961 RchiOBHm_MTg0499091
rosa_laevigata RLG00000000275 RLG00000000277 RLG00000000406 RLG00000000427 RLG00000000481
rosa_roxburghii Rroxscaffold_2G00119470
rosa_samantha Rh3BG350300 Rh6BG169000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AccBSI CCGCTC 1 cut(s) 253
AccII CGCG 1 cut(s) 74
AciI CCGC 2 cut(s) 253, 373
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 2 cut(s) 180, 370
AfiI CCNNNNNNNGG 5 cut(s) 205, 252, 268, 271, 293
Alw26I GTCTC 2 cut(s) 274, 320
AlwI GGATC 1 cut(s) 355
Ama87I CYCGRG 3 cut(s) 246, 291, 330
AoxI GGCC 5 cut(s) 96, 125, 153, 222, 284
ApeKI GCWGC 2 cut(s) 231, 375
AspS9I GGNCC 3 cut(s) 125, 154, 222
AsuC2I CCSGG 5 cut(s) 80, 247, 248, 331, 332
AvaI CYCGRG 3 cut(s) 246, 291, 330
BanI GGYRCC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 243, 387
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BcnI CCSGG 5 cut(s) 80, 247, 248, 331, 332
BcoDI GTCTC 2 cut(s) 274, 320
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 232, 376
BlsI GCNGC 2 cut(s) 233, 377
Bme1390I CCNGG 5 cut(s) 80, 247, 248, 331, 332
BmeT110I CYCGRG 3 cut(s) 246, 291, 330
BmgT120I GGNCC 3 cut(s) 125, 154, 222
BmiI GGNNCC 2 cut(s) 49, 210
BmrFI CCNGG 5 cut(s) 80, 247, 248, 331, 332
BpuMI CCSGG 5 cut(s) 80, 247, 248, 331, 332
BsaHI GRCGYC 1 cut(s) 67
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 4 cut(s) 246, 330, 331, 381
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 252, 268, 271, 293
Bse118I RCCGGY 2 cut(s) 264, 320
BseDI CCNNGG 4 cut(s) 246, 330, 331, 381
BseLI CCNNNNNNNGG 5 cut(s) 205, 252, 268, 271, 293
BseXI GCAGC 2 cut(s) 243, 387
Bsh1236I CGCG 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 5 cut(s) 98, 127, 155, 224, 286
BshNI GGYRCC 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 348
BsiHKCI CYCGRG 3 cut(s) 246, 291, 330
BsiSI CCGG 5 cut(s) 79, 247, 265, 321, 331
BslFI GGGAC 2 cut(s) 78, 287
BslI CCNNNNNNNGG 5 cut(s) 205, 252, 268, 271, 293
BsmAI GTCTC 2 cut(s) 274, 320
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 2 cut(s) 78, 287
BsnI GGCC 5 cut(s) 98, 127, 155, 224, 286
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 3 cut(s) 246, 291, 330
Bsp143I GATC 2 cut(s) 345, 360
Bsp68I TCGCGA 1 cut(s) 74
BspACI CCGC 2 cut(s) 253, 373
BspANI GGCC 5 cut(s) 98, 127, 155, 224, 286
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 2 cut(s) 49, 210
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 264, 320
BssAI RCCGGY 2 cut(s) 264, 320
BssECI CCNNGG 4 cut(s) 246, 330, 331, 381
BssMI GATC 2 cut(s) 345, 360
BssNI GRCGYC 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 76
BstDSI CCRYGG 1 cut(s) 381
BstENI CCTNNNNNAGG 1 cut(s) 203
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 2 cut(s) 348, 363
BstMAI GTCTC 2 cut(s) 274, 320
BstMBI GATC 2 cut(s) 345, 360
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 3 cut(s) 75, 80, 321
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 5 cut(s) 78, 245, 246, 329, 330
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 243, 387
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 5 cut(s) 98, 127, 155, 224, 286
BtgI CCRYGG 1 cut(s) 381
BtuMI TCGCGA 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 76
Cfr10I RCCGGY 2 cut(s) 264, 320
Cfr13I GGNCC 3 cut(s) 125, 154, 222
Cfr9I CCCGGG 2 cut(s) 246, 330
CseI GACGC 2 cut(s) 75, 237
Csp6I GTAC 2 cut(s) 179, 369
CviAII CATG 1 cut(s) 21
CviJI RGCY 9 cut(s) 78, 83, 98, 111, 127, 155, 224, 286, 378
CviKI_1 RGCY 9 cut(s) 78, 83, 98, 111, 127, 155, 224, 286, 378
CviQI GTAC 2 cut(s) 179, 369
DpnI GATC 2 cut(s) 347, 362
DpnII GATC 2 cut(s) 345, 360
EaeI YGGCCR 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 320
Eco88I CYCGRG 3 cut(s) 246, 291, 330
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 1 cut(s) 24
FaiI YATR 5 cut(s) 17, 22, 160, 366, 392
FaqI GGGAC 2 cut(s) 78, 287
FatI CATG 1 cut(s) 20
FauI CCCGC 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 232, 376
Fsp4HI GCNGC 2 cut(s) 232, 376
FspBI CTAG 1 cut(s) 87
GluI GCNGC 2 cut(s) 232, 376
HaeIII GGCC 5 cut(s) 98, 127, 155, 224, 286
HapII CCGG 5 cut(s) 79, 247, 265, 321, 331
HgaI GACGC 2 cut(s) 75, 237
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 1 cut(s) 24
HinfI GANTC 2 cut(s) 256, 352
HpaII CCGG 5 cut(s) 79, 247, 265, 321, 331
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 5 cut(s) 73, 87, 291, 303, 349
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 145, 209
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 80, 321
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 1 cut(s) 24
Kzo9I GATC 2 cut(s) 345, 360
LmnI GCTCC 1 cut(s) 250
Lsp1109I GCAGC 2 cut(s) 243, 387
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 23, 185
MalI GATC 2 cut(s) 347, 362
MbiI CCGCTC 1 cut(s) 253
MboI GATC 2 cut(s) 345, 360
MboII GAAGA 2 cut(s) 16, 370
MflI RGATCY 1 cut(s) 360
MluCI AATT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 7 cut(s) 28, 33, 55, 80, 88, 287, 329
MseI TTAA 2 cut(s) 117, 406
MspI CCGG 5 cut(s) 79, 247, 265, 321, 331
MspR9I CCNGG 5 cut(s) 80, 247, 248, 331, 332
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 75, 80, 321
NciI CCSGG 5 cut(s) 80, 247, 248, 331, 332
NdeII GATC 2 cut(s) 345, 360
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 2 cut(s) 49, 210
NmuCI GTSAC 2 cut(s) 23, 185
NruI TCGCGA 1 cut(s) 74
NspI RCATGY 1 cut(s) 24
PaeR7I CTCGAG 1 cut(s) 291
PceI AGGCCT 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 2 cut(s) 233, 377
Ple19I CGATCG 1 cut(s) 348
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 49, 210
PspPI GGNCC 3 cut(s) 125, 154, 222
PsuI RGATCY 1 cut(s) 360
PvuI CGATCG 1 cut(s) 348
RruI TCGCGA 1 cut(s) 74
RsaI GTAC 2 cut(s) 180, 370
RsaNI GTAC 2 cut(s) 179, 369
SaqAI TTAA 2 cut(s) 117, 406
SatI GCNGC 2 cut(s) 232, 376
Sau3AI GATC 2 cut(s) 345, 360
Sau96I GGNCC 3 cut(s) 125, 154, 222
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 5 cut(s) 80, 247, 248, 331, 332
SetI ASST 4 cut(s) 44, 184, 210, 310
SfcI CTRYAG 1 cut(s) 309
Sfr274I CTCGAG 1 cut(s) 291
SgrAI CRCCGGYG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 291
SmaI CCCGGG 2 cut(s) 248, 332
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 1 cut(s) 118
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 2 cut(s) 253, 373
SspMI CTAG 1 cut(s) 87
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 5 cut(s) 78, 245, 246, 329, 330
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 292
TasI AATT 1 cut(s) 118
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 117, 406
Tru9I TTAA 2 cut(s) 117, 406
TseFI GTSAC 2 cut(s) 23, 185
TseI GCWGC 2 cut(s) 231, 375
Tsp45I GTSAC 2 cut(s) 23, 185
TspDTI ATGAA 3 cut(s) 17, 379, 385
TspGWI ACGGA 1 cut(s) 398
TspMI CCCGGG 2 cut(s) 246, 330
XagI CCTNNNNNAGG 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 86
XceI RCATGY 1 cut(s) 24
XhoI CTCGAG 1 cut(s) 291
XmaI CCCGGG 2 cut(s) 246, 330
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.