RLG00000000275

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017911
Physical Location & Seq
Reverse (-)
312362 .. 314459
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000275

Sequence Viewer

Length: 636 bp
ATGTTTCATCCCTTTACTCCAAGCCTAGCCAACCAGCTAACTCGAACCAGGAGGGAAAGAAAGAGAAGGTTGTCTTCAAAGCACAACTATCTAGCAGGTCATCTCCTCAATCCGTTGATTCCGAACCCAGGGCGAGCTCTACCTTCTCAATCCTTGTCTTCTACTCCTGGTGATAGCAGCATCCGAACAACCAGTGCTCTTCCGGGCCCCTCCGACCCATCAAGCTCGTCCTCGTGGAGGGAGGATTCGTTTGGGATAGAGGTGCTATTAGAGCCCTTTTCCGAAACGGAATCCGAAAGTCAGGAGGGCAATTCCCTCCATTCTGCCGTCCCAAGGGCCGCCCGCGATGAGGCGGGCCCCTCCCATGAGTGGGTGCTTGCTAACGAGCGGTTTTCCGCTCTACTGGCACGGCACCTCCAAAAACACGCAGAAAAGTCGGCGGTGATAGCTAGGTATCCGCAGCTCCGTGAGGCGGATTTCCATCATTTGGGCCAAAAAATGGCCCAAAGCTTTGATATTGATGTGAAATCTCCCTCCGAGATTGAAGCCCTTGCGGCCTCGGAAGAGTTACGGACCTACAATAAATCCAGAAGCTCGTTAGAGAGCTTCTTGGATAGCTACTATTCTGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.51

Weight (kDa)

6.31

Isoelectric Point (pI)

72.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017911)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00660
rosa_chinensis RchiOBHm_Chr7g0235961 RchiOBHm_MTg0499091
rosa_laevigata RLG00000000275 RLG00000000277 RLG00000000406 RLG00000000427 RLG00000000481
rosa_roxburghii Rroxscaffold_2G00119470
rosa_samantha Rh3BG350300 Rh6BG169000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 411
AccB7I CCANNNNNTGG 2 cut(s) 487, 499
AccBSI CCGCTC 2 cut(s) 388, 398
AccII CGCG 1 cut(s) 345
AciI CCGC 9 cut(s) 339, 343, 353, 388, 396, 440, 458, 473, 554
AfiI CCNNNNNNNGG 9 cut(s) 128, 237, 333, 349, 369, 370, 472, 487, 499
AgsI TTSAA 2 cut(s) 78, 545
AjnI CCWGG 3 cut(s) 47, 127, 166
AluBI AGCT 9 cut(s) 37, 137, 225, 449, 463, 510, 594, 606, 618
AluI AGCT 9 cut(s) 37, 137, 225, 449, 463, 510, 594, 606, 618
Alw21I GWGCWC 2 cut(s) 139, 199
AoxI GGCC 6 cut(s) 205, 336, 355, 490, 501, 555
ApaI GGGCCC 2 cut(s) 209, 359
ApeKI GCWGC 2 cut(s) 177, 460
AspS9I GGNCC 8 cut(s) 205, 206, 336, 355, 356, 490, 502, 573
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 182, 454
AvaII GGWCC 1 cut(s) 573
BaeGI GKGCMC 2 cut(s) 209, 359
BanI GGYRCC 1 cut(s) 411
BanII GRGCYC 4 cut(s) 139, 209, 276, 359
BauI CACGAG 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 66, 150
Bbv12I GWGCWC 2 cut(s) 139, 199
BbvI GCAGC 2 cut(s) 189, 472
BccI CCATC 2 cut(s) 226, 489
BceAI ACGGC 2 cut(s) 311, 425
BcgI CGANNNNNNTGC 2 cut(s) 417, 451
BciT130I CCWGG 3 cut(s) 49, 129, 168
BciVI GTATCC 1 cut(s) 465
BcnI CCSGG 1 cut(s) 204
BfaI CTAG 3 cut(s) 26, 92, 450
BfuAI ACCTGC 1 cut(s) 86
BfuI GTATCC 1 cut(s) 465
BglI GCCNNNNNGGC 1 cut(s) 554
BisI GCNGC 4 cut(s) 178, 339, 461, 555
BlsI GCNGC 4 cut(s) 179, 340, 462, 556
Bme1390I CCNGG 4 cut(s) 49, 129, 168, 204
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 8 cut(s) 205, 206, 336, 355, 356, 490, 502, 573
BmiI GGNNCC 5 cut(s) 207, 208, 357, 358, 413
BmrFI CCNGG 4 cut(s) 49, 129, 168, 204
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 66, 150
BpuMI CCSGG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 480
BsaJI CCNNGG 4 cut(s) 127, 128, 332, 558
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 399, 429
Bsc4I CCNNNNNNNGG 9 cut(s) 128, 237, 333, 349, 369, 370, 472, 487, 499
Bse1I ACTGG 2 cut(s) 192, 408
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 3 cut(s) 49, 129, 168
BseDI CCNNGG 4 cut(s) 127, 128, 332, 558
BseGI GGATG 2 cut(s) 7, 180
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 9 cut(s) 128, 237, 333, 349, 369, 370, 472, 487, 499
BseNI ACTGG 2 cut(s) 192, 408
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 2 cut(s) 209, 359
BseXI GCAGC 2 cut(s) 189, 472
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 6 cut(s) 207, 338, 357, 492, 503, 557
BshNI GGYRCC 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 139, 199
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 9 cut(s) 128, 237, 333, 349, 369, 370, 472, 487, 499
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 6 cut(s) 207, 338, 357, 492, 503, 557
Bsp120I GGGCCC 2 cut(s) 205, 355
Bsp1286I GDGCHC 5 cut(s) 139, 199, 209, 276, 359
BspACI CCGC 9 cut(s) 339, 343, 353, 388, 396, 440, 458, 473, 554
BspANI GGCC 6 cut(s) 207, 338, 357, 492, 503, 557
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 5 cut(s) 207, 208, 357, 358, 413
BspMI ACCTGC 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 411
BsrBI CCGCTC 2 cut(s) 388, 398
BsrI ACTGG 2 cut(s) 192, 408
BssECI CCNNGG 4 cut(s) 127, 128, 332, 558
BssSI CACGAG 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 332
Bst2BI CACGAG 1 cut(s) 232
Bst2UI CCWGG 3 cut(s) 49, 129, 168
Bst6I CTCTTC 2 cut(s) 204, 558
BstC8I GCNNGC 4 cut(s) 135, 343, 355, 378
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 2 cut(s) 7, 180
BstFNI CGCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 271, 404, 446, 554
BstNI CCWGG 3 cut(s) 49, 129, 168
BstSCI CCNGG 4 cut(s) 47, 127, 166, 202
BstSLI GKGCMC 2 cut(s) 209, 359
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 189, 472
BstV2I GAAGAC 2 cut(s) 66, 150
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 6 cut(s) 207, 338, 357, 492, 503, 557
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 7, 180
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 4 cut(s) 135, 343, 355, 378
Cfr13I GGNCC 8 cut(s) 205, 206, 336, 355, 356, 490, 502, 573
CviAII CATG 1 cut(s) 365
Eam1104I CTCTTC 2 cut(s) 204, 558
EarI CTCTTC 2 cut(s) 204, 558
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 332
Eco24I GRGCYC 4 cut(s) 139, 209, 276, 359
Eco47I GGWCC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 137
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoO109I RGGNCCY 2 cut(s) 206, 356
EcoRII CCWGG 3 cut(s) 47, 127, 166
EcoT14I CCWWGG 1 cut(s) 332
EcoT38I GRGCYC 4 cut(s) 139, 209, 276, 359
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 1 cut(s) 368
FaiI YATR 1 cut(s) 366
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 364
FauI CCCGC 2 cut(s) 346, 350
Fnu4HI GCNGC 4 cut(s) 178, 339, 461, 555
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 4 cut(s) 139, 209, 276, 359
Fsp4HI GCNGC 4 cut(s) 178, 339, 461, 555
FspBI CTAG 3 cut(s) 26, 92, 450
GluI GCNGC 4 cut(s) 178, 339, 461, 555
HaeIII GGCC 6 cut(s) 207, 338, 357, 492, 503, 557
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 3 cut(s) 118, 245, 290
HpaII CCGG 1 cut(s) 203
HphI GGTGA 2 cut(s) 182, 454
Hpy188I TCNGA 8 cut(s) 123, 185, 214, 283, 295, 538, 562, 628
Hpy188III TCNNGA 2 cut(s) 302, 588
HpyAV CCTTC 2 cut(s) 60, 153
HpyF10VI GCNNNNNNNGC 4 cut(s) 271, 404, 446, 554
Hsp92II CATG 1 cut(s) 368
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 468
Lsp1109I GCAGC 2 cut(s) 189, 472
LweI GCATC 1 cut(s) 189
MaeI CTAG 3 cut(s) 26, 92, 450
MaeIII GTNAC 1 cut(s) 567
MbiI CCGCTC 2 cut(s) 388, 398
MboII GAAGA 4 cut(s) 66, 150, 191, 575
MhlI GDGCHC 5 cut(s) 139, 199, 209, 276, 359
MluCI AATT 2 cut(s) 310, 629
MmeI TCCRAC 1 cut(s) 237
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 4 cut(s) 49, 129, 168, 204
MvaI CCWGG 3 cut(s) 49, 129, 168
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 4 cut(s) 271, 404, 446, 554
NciI CCSGG 1 cut(s) 204
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 5 cut(s) 207, 208, 357, 358, 413
PasI CCCWGGG 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 118, 245, 290
PflMI CCANNNNNTGG 2 cut(s) 487, 499
PkrI GCNGC 4 cut(s) 179, 340, 462, 556
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 3 cut(s) 47, 127, 166
PspGI CCWGG 3 cut(s) 47, 127, 166
PspN4I GGNNCC 5 cut(s) 207, 208, 357, 358, 413
PspOMI GGGCCC 2 cut(s) 205, 355
PspPI GGNCC 8 cut(s) 205, 206, 336, 355, 356, 490, 502, 573
SacI GAGCTC 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 204
SatI GCNGC 4 cut(s) 178, 339, 461, 555
Sau96I GGNCC 8 cut(s) 205, 206, 336, 355, 356, 490, 502, 573
ScrFI CCNGG 4 cut(s) 49, 129, 168, 204
SduI GDGCHC 5 cut(s) 139, 199, 209, 276, 359
SfaNI GCATC 1 cut(s) 189
SinI GGWCC 1 cut(s) 573
Sse9I AATT 2 cut(s) 310, 629
SsiI CCGC 9 cut(s) 339, 343, 353, 388, 396, 440, 458, 473, 554
SspMI CTAG 3 cut(s) 26, 92, 450
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 4 cut(s) 47, 127, 166, 202
StyI CCWWGG 1 cut(s) 332
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 310, 629
TauI GCSGC 2 cut(s) 341, 557
TfiI GAWTC 3 cut(s) 118, 245, 290
TscAI CASTG 1 cut(s) 199
TseI GCWGC 2 cut(s) 177, 460
TspGWI ACGGA 4 cut(s) 102, 302, 455, 586
TspRI CASTG 1 cut(s) 199
Van91I CCANNNNNTGG 2 cut(s) 487, 499
VpaK11BI GGWCC 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 235
XspI CTAG 3 cut(s) 26, 92, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.