Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009330

Physical Location & Seq

Genomic Coordinates Reverse (-)

109450 .. 113703

Gene Structure 4254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00201.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGACGCCATTAATGAGGTCATACAAGCTTGGCGTGACATTGGAGGCAAGAGACATCTTTTCTGAACTAACCAAACGTGGTTGGCTGGTCGCTGTTATGAAAGTTGAAGGCAGCAGTGCATGTGAGAGTTCAAGCATGATGTACATAAACAAACTGCAGGAGTTGCCTTTGACTATATGCCAACTAAATAAGAAGGCAATTGGAAATGATGTTGTGACAGTTGGTTATATTATGAAGCCTTCTCGTGAAGAAGATTTTGCTAAGAGGGGTGCATTTCCTATGTGTCCGAATGAAATTGGGCTGATGTTCCTGCCCCTCACATTTGAACTCCCCCTATCATCTCAATTACAAGAAGTAGATGTACTTCTCCACAAAGCAACTGACGAAATTATGTCCGTTGATTTGAATAGCTCTTTACATTCCTCTAATAAGATAACATACAGCAGGGGCATGCAGGAATTGCAAAGATATATGGATCATCACCAGGACCTCTGTGTGATTGACCCACTTAACTCTATTTATCCTGTATTGGATCGATTGAAAATCCAACAGATTCTACTTGCATTGGAGGATCTCAAAACTGGAAGTCGCCGTGCAATTAGGGGGCCCCATTATCTCAAGGTTGATGATTTTAACCAGTCTGGTTTAACTCAAATGCTATCTGAAGCTAAATTAGCTCTTCCAAGCATAGTAAAACCTCAAGTTGCTTGTGGTGTAGCCGATGCTCATAGTATGGCAATTGTCTTTAGAGTCGAAGATTTTAAGGATCTGACTGTTCCTCTTCCAGCGATTATACAGGAATACGTGGACCATTCCTCGACGCTCTACAAGTTTTATGTTTTGGGCGAGAAAGTTTACCATGCAGTTAAGAGCTCCACACCAAATGCAGATACCTTGATGAAATTATCTGGAAGTGATGAGCCAAAACCTTTGGTCTTTGACAGCCTAAAATCCTTGCCTACTAGCAAACCGAATCCAAATTCTGTAGACAACAACAGCTTGAAGGCCACTGAGCACTGCATTGATCTTGAGCTGGTTTCAAGTGCAGCTAATTTTCTTATGAGAAAGCTTGACCTGACCGTGTTTGGCTTTGATGTCGTAATCCAGGAAGGAACCGGTGATCATGTAATTGTAGATGTAAATTACCTTCCATCATTCAAGGAAGTACCCAACGAAGTTGCCATCCCCGCGTTTTGGGATGCAATTAAGAAGAAATATGACTTGAAAAAGAAGAAATTAGCAGCAGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0047325 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 map00562

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

418

Amino Acids

46.54

Weight (kDa)

6.09

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin	PF05770	202 - 391	3.7e-26	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43980
fragaria_vesca	FvH4_1g00201
malus_domestica	MD00G1087100.v1.1 MD15G1143000.v1.1
prunus_persica	Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1
pyrus_communis	pycom15g12910
rosa_chinensis	RchiOBHm_Chr2g0084491
rosa_laevigata	RLG00000015622
rosa_multiflora	Rmu_sc0003974.1_g000001 Rmu_sc0009647.1_g000006
rosa_roxburghii	Rroxscaffold_2G00156020
rosa_rugosa	Rorug01G0454400 Rorug01G0454500
rosa_samantha	Rh2AG002500 Rh2BG002100 Rh2CG002600 Rh2DG002600
rosa_wichuraiana	Rw2G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	987
AccII	CGCG	1 cut(s)	1190
AciI	CCGC	1 cut(s)	1188
AclWI	GGATC	4 cut(s)	483, 540, 579, 774
AcsI	RAATTY	1 cut(s)	979
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	143, 363, 1167
AfiI	CCNNNNNNNGG	1 cut(s)	1194
AgeI	ACCGGT	1 cut(s)	1115
AgsI	TTSAA	9 cut(s)	107, 132, 326, 406, 541, 1003, 1041, 1159, 1225
AjnI	CCWGG	2 cut(s)	483, 1104
Alw21I	GWGCWC	2 cut(s)	875, 1017
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	4 cut(s)	483, 540, 579, 774
AoxI	GGCC	2 cut(s)	605, 1005
ApaI	GGGCCC	1 cut(s)	609
ApeKI	GCWGC	4 cut(s)	111, 1046, 1241, 1244
ApoI	RAATTY	1 cut(s)	979
AseI	ATTAAT	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	1115
AspS9I	GGNCC	4 cut(s)	487, 605, 606, 808
AsuHPI	GGTGA	2 cut(s)	473, 1130
AsuNHI	GCTAGC	1 cut(s)	1247
AvaII	GGWCC	2 cut(s)	487, 808
BaeGI	GKGCMC	1 cut(s)	609
BanII	GRGCYC	2 cut(s)	609, 875
BarI	GAAGNNNNNNTAC	6 cut(s)	345, 348, 377, 380, 1131, 1163
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	875, 1017
BbvI	GCAGC	2 cut(s)	123, 1058
BccI	CCATC	2 cut(s)	1159, 1190
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	2 cut(s)	485, 1106
BclI	TGATCA	1 cut(s)	1120
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	3 cut(s)	963, 1248, 1252
BfmI	CTRYAG	2 cut(s)	155, 984
BisI	GCNGC	4 cut(s)	112, 1047, 1242, 1245
BlsI	GCNGC	4 cut(s)	113, 1048, 1243, 1246
Bme1390I	CCNGG	2 cut(s)	485, 1106
Bme18I	GGWCC	2 cut(s)	487, 808
BmgT120I	GGNCC	4 cut(s)	487, 605, 606, 808
BmiI	GGNNCC	4 cut(s)	606, 607, 608, 1114
BmrFI	CCNGG	2 cut(s)	485, 1106
BmsI	GCATC	2 cut(s)	712, 1189
BmtI	GCTAGC	1 cut(s)	1251
BpuEI	CTTGAG	3 cut(s)	602, 684, 1049
Bsa29I	ATCGAT	1 cut(s)	535
BsaAI	YACGTR	1 cut(s)	805
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	1115
Bsc4I	CCNNNNNNNGG	1 cut(s)	1194
Bse118I	RCCGGY	1 cut(s)	1115
Bse1I	ACTGG	2 cut(s)	586, 637
BseBI	CCWGG	2 cut(s)	485, 1106
BseCI	ATCGAT	1 cut(s)	535
BseGI	GGATG	2 cut(s)	1182, 1204
BseLI	CCNNNNNNNGG	1 cut(s)	1194
BseMII	CTCAG	1 cut(s)	1002
BseNI	ACTGG	2 cut(s)	586, 637
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	2 cut(s)	123, 1058
BsgI	GTGCAG	1 cut(s)	1065
Bsh1236I	CGCG	1 cut(s)	1190
BshFI	GGCC	2 cut(s)	607, 1007
BshTI	ACCGGT	1 cut(s)	1115
BshVI	ATCGAT	1 cut(s)	535
BsiHKAI	GWGCWC	2 cut(s)	875, 1017
BsiSI	CCGG	1 cut(s)	1116
BslI	CCNNNNNNNGG	1 cut(s)	1194
BsmAI	GTCTC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	607, 1007
Bsp120I	GGGCCC	1 cut(s)	605
Bsp1286I	GDGCHC	3 cut(s)	609, 875, 1017
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	6 cut(s)	475, 532, 571, 766, 1024, 1120
BspACI	CCGC	1 cut(s)	1188
BspANI	GGCC	2 cut(s)	607, 1007
BspCNI	CTCAG	1 cut(s)	1003
BspDI	ATCGAT	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	1190
BspLI	GGNNCC	4 cut(s)	606, 607, 608, 1114
BspMAI	CTGCAG	1 cut(s)	159
BspOI	GCTAGC	1 cut(s)	1251
BspPI	GGATC	4 cut(s)	483, 540, 579, 774
BspQI	GCTCTTC	1 cut(s)	684
BsrFI	RCCGGY	1 cut(s)	1115
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	586, 637
BssAI	RCCGGY	1 cut(s)	1115
BssMI	GATC	6 cut(s)	475, 532, 571, 766, 1024, 1120
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	485, 1106
Bst4CI	ACNGT	3 cut(s)	220, 775, 1081
Bst6I	CTCTTC	2 cut(s)	684, 786
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	163, 460
BstAUI	TGTACA	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	452, 1249
BstDEI	CTNAG	2 cut(s)	261, 1011
BstF5I	GGATG	2 cut(s)	1182, 1204
BstFNI	CGCG	1 cut(s)	1190
BstKTI	GATC	6 cut(s)	478, 535, 574, 769, 1027, 1123
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	6 cut(s)	475, 532, 571, 766, 1024, 1120
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 460, 674, 1187
BstNI	CCWGG	2 cut(s)	485, 1106
BstNSI	RCATGY	2 cut(s)	123, 454
BstSCI	CCNGG	2 cut(s)	483, 1104
BstSFI	CTRYAG	2 cut(s)	155, 984
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	1 cut(s)	1190
BstV1I	GCAGC	2 cut(s)	123, 1058
BstX2I	RGATCY	2 cut(s)	571, 766
BstYI	RGATCY	2 cut(s)	571, 766
Bsu15I	ATCGAT	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	607, 1007
BsuTUI	ATCGAT	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	1182, 1204
BtsI	GCAGTG	2 cut(s)	121, 1015
BtsIMutI	CAGTG	3 cut(s)	121, 1008, 1015
Cac8I	GCNNGC	2 cut(s)	452, 1249
Cfr10I	RCCGGY	1 cut(s)	1115
Cfr13I	GGNCC	4 cut(s)	487, 605, 606, 808
ClaI	ATCGAT	1 cut(s)	535
CseI	GACGC	2 cut(s)	13, 829
Csp6I	GTAC	3 cut(s)	142, 362, 1166
CspAI	ACCGGT	1 cut(s)	1115
CviAII	CATG	5 cut(s)	120, 136, 451, 860, 1124
CviQI	GTAC	3 cut(s)	142, 362, 1166
DdeI	CTNAG	2 cut(s)	261, 1011
DpnI	GATC	6 cut(s)	477, 534, 573, 768, 1026, 1122
DpnII	GATC	6 cut(s)	475, 532, 571, 766, 1024, 1120
Eam1104I	CTCTTC	2 cut(s)	684, 786
EarI	CTCTTC	2 cut(s)	684, 786
Ecl136II	GAGCTC	1 cut(s)	873
Eco24I	GRGCYC	2 cut(s)	609, 875
Eco47I	GGWCC	2 cut(s)	487, 808
Eco53kI	GAGCTC	1 cut(s)	873
Eco57I	CTGAAG	1 cut(s)	684
EcoICRI	GAGCTC	1 cut(s)	873
EcoO109I	RGGNCCY	3 cut(s)	487, 605, 606
EcoRII	CCWGG	2 cut(s)	483, 1104
EcoT38I	GRGCYC	2 cut(s)	609, 875
FaeI	CATG	5 cut(s)	123, 139, 454, 863, 1127
FatI	CATG	5 cut(s)	119, 135, 450, 859, 1123
FauI	CCCGC	1 cut(s)	1195
FbaI	TGATCA	1 cut(s)	1120
FblI	GTMKAC	1 cut(s)	987
Fnu4HI	GCNGC	4 cut(s)	112, 1047, 1242, 1245
FokI	GGATG	2 cut(s)	1169, 1211
FriOI	GRGCYC	2 cut(s)	609, 875
Fsp4HI	GCNGC	4 cut(s)	112, 1047, 1242, 1245
FspBI	CTAG	3 cut(s)	963, 1248, 1252
GluI	GCNGC	4 cut(s)	112, 1047, 1242, 1245
HaeIII	GGCC	2 cut(s)	607, 1007
HapII	CCGG	1 cut(s)	1116
HgaI	GACGC	2 cut(s)	13, 829
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	123, 139, 454, 863, 1127
HindIII	AAGCTT	2 cut(s)	26, 1067
HinfI	GANTC	3 cut(s)	553, 750, 973
HpaII	CCGG	1 cut(s)	1116
HphI	GGTGA	2 cut(s)	473, 1130
Hpy166II	GTNNAC	3 cut(s)	808, 856, 988
Hpy188I	TCNGA	4 cut(s)	64, 288, 664, 771
Hpy188III	TCNNGA	3 cut(s)	245, 909, 1028
Hpy8I	GTNNAC	3 cut(s)	808, 856, 988
Hpy99I	CGWCG	1 cut(s)	823
HpyAV	CCTTC	6 cut(s)	101, 187, 249, 997, 1103, 1157
HpyCH4III	ACNGT	3 cut(s)	220, 775, 1081
HpyCH4IV	ACGT	2 cut(s)	76, 804
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 460, 674, 1187
HpyF3I	CTNAG	2 cut(s)	261, 1011
HpySE526I	ACGT	2 cut(s)	76, 804
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	123, 139, 454, 863, 1127
Ksp22I	TGATCA	1 cut(s)	1120
Kzo9I	GATC	6 cut(s)	475, 532, 571, 766, 1024, 1120
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	2 cut(s)	123, 1058
LweI	GCATC	2 cut(s)	712, 1189
MaeI	CTAG	3 cut(s)	963, 1248, 1252
MaeII	ACGT	2 cut(s)	76, 804
MaeIII	GTNAC	2 cut(s)	34, 214
MalI	GATC	6 cut(s)	477, 534, 573, 768, 1026, 1122
MboI	GATC	6 cut(s)	475, 532, 571, 766, 1024, 1120
MboII	GAAGA	7 cut(s)	260, 263, 671, 767, 773, 1222, 1243
MfeI	CAATTG	2 cut(s)	198, 738
MflI	RGATCY	2 cut(s)	571, 766
MhlI	GDGCHC	3 cut(s)	609, 875, 1017
MlyI	GAGTC	1 cut(s)	759
MmeI	TCCRAC	1 cut(s)	571
MseI	TTAA	7 cut(s)	11, 510, 633, 647, 762, 867, 1206
MspI	CCGG	1 cut(s)	1116
MspR9I	CCNGG	2 cut(s)	485, 1106
MunI	CAATTG	2 cut(s)	198, 738
MvaI	CCWGG	2 cut(s)	485, 1106
MvnI	CGCG	1 cut(s)	1190
MwoI	GCNNNNNNNGC	4 cut(s)	163, 460, 674, 1187
NdeII	GATC	6 cut(s)	475, 532, 571, 766, 1024, 1120
NheI	GCTAGC	1 cut(s)	1247
NlaIII	CATG	5 cut(s)	123, 139, 454, 863, 1127
NlaIV	GGNNCC	4 cut(s)	606, 607, 608, 1114
NmuCI	GTSAC	2 cut(s)	34, 214
NspI	RCATGY	2 cut(s)	123, 454
PaeI	GCATGC	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	684
PfeI	GAWTC	2 cut(s)	553, 973
PfoI	TCCNGGA	1 cut(s)	1104
PinAI	ACCGGT	1 cut(s)	1115
PkrI	GCNGC	4 cut(s)	113, 1048, 1243, 1246
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
Ppu21I	YACGTR	1 cut(s)	805
PpuMI	RGGWCCY	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	875
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	2 cut(s)	483, 1104
PspGI	CCWGG	2 cut(s)	483, 1104
PspN4I	GGNNCC	4 cut(s)	606, 607, 608, 1114
PspOMI	GGGCCC	1 cut(s)	605
PspPI	GGNCC	4 cut(s)	487, 605, 606, 808
PspPPI	RGGWCCY	1 cut(s)	487
PstI	CTGCAG	1 cut(s)	159
PsuI	RGATCY	2 cut(s)	571, 766
RsaI	GTAC	3 cut(s)	143, 363, 1167
RsaNI	GTAC	3 cut(s)	142, 362, 1166
SacI	GAGCTC	1 cut(s)	875
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	7 cut(s)	11, 510, 633, 647, 762, 867, 1206
SatI	GCNGC	4 cut(s)	112, 1047, 1242, 1245
Sau3AI	GATC	6 cut(s)	475, 532, 571, 766, 1024, 1120
Sau96I	GGNCC	4 cut(s)	487, 605, 606, 808
SchI	GAGTC	1 cut(s)	759
ScrFI	CCNGG	2 cut(s)	485, 1106
SduI	GDGCHC	3 cut(s)	609, 875, 1017
SfaNI	GCATC	2 cut(s)	712, 1189
SfcI	CTRYAG	2 cut(s)	155, 984
SinI	GGWCC	2 cut(s)	487, 808
SmlI	CTYRAG	3 cut(s)	617, 699, 1028
SmoI	CTYRAG	3 cut(s)	617, 699, 1028
SphI	GCATGC	1 cut(s)	454
SsiI	CCGC	1 cut(s)	1188
SspMI	CTAG	3 cut(s)	963, 1248, 1252
SstI	GAGCTC	1 cut(s)	875
StyD4I	CCNGG	2 cut(s)	483, 1104
TaaI	ACNGT	3 cut(s)	220, 775, 1081
TaiI	ACGT	2 cut(s)	79, 807
TaqI	TCGA	3 cut(s)	535, 753, 818
TatI	WGTACW	2 cut(s)	141, 361
TfiI	GAWTC	2 cut(s)	553, 973
Tru1I	TTAA	7 cut(s)	11, 510, 633, 647, 762, 867, 1206
Tru9I	TTAA	7 cut(s)	11, 510, 633, 647, 762, 867, 1206
TscAI	CASTG	3 cut(s)	121, 1015, 1022
TseFI	GTSAC	2 cut(s)	34, 214
TseI	GCWGC	4 cut(s)	111, 1046, 1241, 1244
Tsp45I	GTSAC	2 cut(s)	34, 214
TspDTI	ATGAA	4 cut(s)	113, 248, 306, 914
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	3 cut(s)	121, 1015, 1022
VpaK11BI	GGWCC	2 cut(s)	487, 808
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	1 cut(s)	979
XceI	RCATGY	2 cut(s)	123, 454
XmiI	GTMKAC	1 cut(s)	987
XspI	CTAG	3 cut(s)	963, 1248, 1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.