Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009647.1

Orthogroup ID

OG0009330

Physical Location & Seq

Genomic Coordinates Forward (+)

22477 .. 25540

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009647.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggcggttggaggagtaatactggacgagtctgcactacttgagaaatcgagtgggttgctaccagctgcccaccctgtgctgcgtaagctccgccattccaacatccctacgggaatttcttatggaccaggtcttgaacctcacaaggtcagacttctgaaagagattgcgatgcagtattcaatccattgcttcatcttagatgcatcctctatagatgatgctataaatgaggtcatactagcttggtgtgacattggaggcagtattttgttcctagcctctgacaacaagaaagacatctttcctaaactaagcatccgtggttggctggttgctgttatgaatgttgaaggcagcagtgcaagtgagagttcaagcatggtttacatcaacaaactgcaggagttgcctttgactatttgccacttaaataagaaggcaactggaaacagtgttgtgacagttggttatattatgaagccttctcgtgaagaagattttgctaagaggggcgcattccctatgtgtccaactcaaaatgggctgattttcatgcccctcacatttgaactccctctatcacctcaattacaagaagttgatgtacttctccacaaagcaactgatgaaattatgtccattgatttgaatagctctttactttcctctaataagataacatacagcaggggcatgcaggaattgcaaagatatatggaacatcaccaggacctctgtgtgattgacccacttaactctatttatcctgtattggatcgattgaaaattcaacagattctacttgcattggaggatctcaaaactggaagtttctgtgcaattagggggccccattatctcaaggttcttttcctccatctcataatgagcaagttcacccgttgggtcacctactattcactgtattttagtgtatattttcattctctggatcacgaaatacactgtgcccgtgacccagagcacgagatacactgtgcccgtgacccagatggtgaaattaacactaaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0047325 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 map00562

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

347

Amino Acids

39.02

Weight (kDa)

6.2

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43980
fragaria_vesca	FvH4_1g00201
malus_domestica	MD00G1087100.v1.1 MD15G1143000.v1.1
prunus_persica	Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1
pyrus_communis	pycom15g12910
rosa_chinensis	RchiOBHm_Chr2g0084491
rosa_laevigata	RLG00000015622
rosa_multiflora	Rmu_sc0003974.1_g000001 Rmu_sc0009647.1_g000006
rosa_roxburghii	Rroxscaffold_2G00156020
rosa_rugosa	Rorug01G0454400 Rorug01G0454500
rosa_samantha	Rh2AG002500 Rh2BG002100 Rh2CG002600 Rh2DG002600
rosa_wichuraiana	Rw2G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 94
AclWI	GGATC	3 cut(s)	789, 828, 966
AcsI	RAATTY	2 cut(s)	117, 792
AdeI	CACNNNGTG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	612
AgsI	TTSAA	8 cut(s)	140, 186, 356, 381, 575, 655, 790, 797
AjnI	CCWGG	2 cut(s)	130, 732
AluBI	AGCT	4 cut(s)	68, 91, 248, 660
AluI	AGCT	4 cut(s)	68, 91, 248, 660
Alw21I	GWGCWC	1 cut(s)	993
AlwI	GGATC	3 cut(s)	789, 828, 966
AoxI	GGCC	1 cut(s)	854
ApaI	GGGCCC	1 cut(s)	858
ApeKI	GCWGC	3 cut(s)	68, 82, 360
ApoI	RAATTY	2 cut(s)	117, 792
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	4 cut(s)	128, 736, 854, 855
AsuHPI	GGTGA	5 cut(s)	579, 722, 895, 907, 1034
AvaII	GGWCC	2 cut(s)	128, 736
BaeGI	GKGCMC	3 cut(s)	858, 979, 1009
BanII	GRGCYC	1 cut(s)	858
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BauI	CACGAG	2 cut(s)	492, 992
Bbv12I	GWGCWC	1 cut(s)	993
BbvI	GCAGC	3 cut(s)	55, 69, 372
BccI	CCATC	2 cut(s)	891, 1013
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	2 cut(s)	132, 734
BfaI	CTAG	2 cut(s)	245, 281
BfmI	CTRYAG	2 cut(s)	216, 404
BisI	GCNGC	3 cut(s)	69, 83, 361
BlsI	GCNGC	3 cut(s)	70, 84, 362
Bme1390I	CCNGG	2 cut(s)	132, 734
Bme18I	GGWCC	2 cut(s)	128, 736
BmgT120I	GGNCC	4 cut(s)	128, 736, 854, 855
BmiI	GGNNCC	3 cut(s)	855, 856, 857
BmrFI	CCNGG	2 cut(s)	132, 734
BmsI	GCATC	5 cut(s)	165, 196, 214, 218, 330
BpuEI	CTTGAG	2 cut(s)	62, 851
Bsa29I	ATCGAT	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	325
Bse1I	ACTGG	3 cut(s)	27, 454, 835
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	132, 734
BseCI	ATCGAT	1 cut(s)	784
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	3 cut(s)	105, 209, 321
BseMI	GCAATG	1 cut(s)	190
BseNI	ACTGG	3 cut(s)	27, 454, 835
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	3 cut(s)	858, 979, 1009
BseXI	GCAGC	3 cut(s)	55, 69, 372
BsgI	GTGCAG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	856
BshVI	ATCGAT	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	993
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	856
Bsp120I	GGGCCC	1 cut(s)	854
Bsp1286I	GDGCHC	4 cut(s)	858, 979, 993, 1009
Bsp143I	GATC	3 cut(s)	781, 820, 958
BspACI	CCGC	2 cut(s)	5, 94
BspANI	GGCC	1 cut(s)	856
BspDI	ATCGAT	1 cut(s)	784
BspLI	GGNNCC	3 cut(s)	855, 856, 857
BspMAI	CTGCAG	1 cut(s)	408
BspPI	GGATC	3 cut(s)	789, 828, 966
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	27, 454, 835
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	3 cut(s)	781, 820, 958
BssSI	CACGAG	2 cut(s)	492, 992
Bst2BI	CACGAG	2 cut(s)	492, 992
Bst2UI	CCWGG	2 cut(s)	132, 734
Bst4CI	ACNGT	5 cut(s)	458, 469, 930, 974, 1004
BstAPI	GCANNNNNTGC	2 cut(s)	412, 709
BstC8I	GCNNGC	1 cut(s)	701
BstDEI	CTNAG	3 cut(s)	202, 317, 510
BstDSI	CCRYGG	1 cut(s)	325
BstEII	GGTNACC	1 cut(s)	913
BstF5I	GGATG	3 cut(s)	105, 209, 321
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	3 cut(s)	784, 823, 961
BstMBI	GATC	3 cut(s)	781, 820, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 412, 709
BstNI	CCWGG	2 cut(s)	132, 734
BstNSI	RCATGY	1 cut(s)	703
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	130, 732
BstSFI	CTRYAG	2 cut(s)	216, 404
BstSLI	GKGCMC	3 cut(s)	858, 979, 1009
BstV1I	GCAGC	3 cut(s)	55, 69, 372
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
Bsu15I	ATCGAT	1 cut(s)	784
BsuRI	GGCC	1 cut(s)	856
BsuTUI	ATCGAT	1 cut(s)	784
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	105, 209, 321
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	5 cut(s)	370, 463, 926, 970, 1000
Cac8I	GCNNGC	1 cut(s)	701
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	4 cut(s)	128, 736, 854, 855
ClaI	ATCGAT	1 cut(s)	784
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	3 cut(s)	385, 559, 700
CviJI	RGCY	9 cut(s)	68, 91, 248, 284, 334, 487, 550, 660, 856
CviKI_1	RGCY	9 cut(s)	68, 91, 248, 284, 334, 487, 550, 660, 856
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	3 cut(s)	202, 317, 510
DpnI	GATC	3 cut(s)	783, 822, 960
DpnII	GATC	3 cut(s)	781, 820, 958
DraIII	CACNNNGTG	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	2 cut(s)	128, 736
Eco91I	GGTNACC	1 cut(s)	913
EcoO109I	RGGNCCY	3 cut(s)	736, 854, 855
EcoO65I	GGTNACC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	130, 732
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	858
FaeI	CATG	3 cut(s)	388, 562, 703
FatI	CATG	3 cut(s)	384, 558, 699
Fnu4HI	GCNGC	3 cut(s)	69, 83, 361
FokI	GGATG	3 cut(s)	92, 196, 308
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	3 cut(s)	69, 83, 361
FspBI	CTAG	2 cut(s)	245, 281
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	3 cut(s)	69, 83, 361
HaeIII	GGCC	1 cut(s)	856
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	388, 562, 703
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	2 cut(s)	29, 802
HphI	GGTGA	5 cut(s)	579, 722, 895, 907, 1034
Hpy166II	GTNNAC	2 cut(s)	391, 903
Hpy188I	TCNGA	3 cut(s)	155, 162, 289
Hpy188III	TCNNGA	4 cut(s)	137, 494, 956, 962
Hpy8I	GTNNAC	2 cut(s)	391, 903
HpyAV	CCTTC	3 cut(s)	350, 436, 498
HpyCH4III	ACNGT	5 cut(s)	458, 469, 930, 974, 1004
HpyCH4V	TGCA	9 cut(s)	35, 178, 209, 368, 406, 703, 712, 812, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 412, 709
HpyF3I	CTNAG	3 cut(s)	202, 317, 510
Hsp92II	CATG	3 cut(s)	388, 562, 703
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	3 cut(s)	781, 820, 958
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	3 cut(s)	55, 69, 372
LweI	GCATC	5 cut(s)	165, 196, 214, 218, 330
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	2 cut(s)	245, 281
MaeIII	GTNAC	5 cut(s)	254, 463, 913, 980, 1010
MalI	GATC	3 cut(s)	783, 822, 960
MboI	GATC	3 cut(s)	781, 820, 958
MboII	GAAGA	2 cut(s)	509, 512
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	4 cut(s)	858, 979, 993, 1009
MluCI	AATT	7 cut(s)	117, 593, 636, 707, 792, 846, 1026
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	126, 560
Mph1103I	ATGCAT	1 cut(s)	211
MseI	TTAA	3 cut(s)	434, 759, 1029
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	132, 734
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	2 cut(s)	132, 734
MwoI	GCNNNNNNNGC	3 cut(s)	88, 412, 709
NdeII	GATC	3 cut(s)	781, 820, 958
NlaIII	CATG	3 cut(s)	388, 562, 703
NlaIV	GGNNCC	3 cut(s)	855, 856, 857
NmuCI	GTSAC	5 cut(s)	254, 463, 913, 980, 1010
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	703
PctI	GAATGC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	802
PflFI	GACNNNGTC	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	70, 84, 362
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	736
Psp5II	RGGWCCY	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	130, 732
PspEI	GGTNACC	1 cut(s)	913
PspGI	CCWGG	2 cut(s)	130, 732
PspN4I	GGNNCC	3 cut(s)	855, 856, 857
PspOMI	GGGCCC	1 cut(s)	854
PspPI	GGNCC	4 cut(s)	128, 736, 854, 855
PspPPI	RGGWCCY	1 cut(s)	736
PstI	CTGCAG	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	820
PsyI	GACNNNGTC	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
SaqAI	TTAA	3 cut(s)	434, 759, 1029
SatI	GCNGC	3 cut(s)	69, 83, 361
Sau3AI	GATC	3 cut(s)	781, 820, 958
Sau96I	GGNCC	4 cut(s)	128, 736, 854, 855
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	132, 734
SduI	GDGCHC	4 cut(s)	858, 979, 993, 1009
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	5 cut(s)	165, 196, 214, 218, 330
SfcI	CTRYAG	2 cut(s)	216, 404
SinI	GGWCC	2 cut(s)	128, 736
SmlI	CTYRAG	2 cut(s)	41, 866
SmoI	CTYRAG	2 cut(s)	41, 866
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	7 cut(s)	117, 593, 636, 707, 792, 846, 1026
SsiI	CCGC	2 cut(s)	5, 94
SspMI	CTAG	2 cut(s)	245, 281
StyD4I	CCNGG	2 cut(s)	130, 732
TaaI	ACNGT	5 cut(s)	458, 469, 930, 974, 1004
TaqI	TCGA	2 cut(s)	50, 784
TasI	AATT	7 cut(s)	117, 593, 636, 707, 792, 846, 1026
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	3 cut(s)	434, 759, 1029
Tru9I	TTAA	3 cut(s)	434, 759, 1029
TscAI	CASTG	5 cut(s)	370, 463, 933, 977, 1007
TseFI	GTSAC	5 cut(s)	254, 463, 913, 980, 1010
TseI	GCWGC	3 cut(s)	68, 82, 360
Tsp45I	GTSAC	5 cut(s)	254, 463, 913, 980, 1010
TspDTI	ATGAA	6 cut(s)	187, 362, 497, 547, 648, 938
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	5 cut(s)	370, 463, 933, 977, 1007
Tth111I	GACNNNGTC	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	128, 736
XapI	RAATTY	2 cut(s)	117, 792
XceI	RCATGY	1 cut(s)	703
XspI	CTAG	2 cut(s)	245, 281
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.