Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009330

Physical Location & Seq

Genomic Coordinates Forward (+)

8829669 .. 8833520

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12910.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGCAGGCGTTGGCGGTGGCGGTGTAGGAGGAGTGATATTGGACGAGTGTGTACTTTTTGGTGGTACCAATGTCAACTTGCAATCAGACGCCCACTTTCTGCTTCATAAGCTTCGCCATGCCAACATTCCTACGGGAATTTCTTATGGAGCAGGTCTTGAAGCTCATAAGGTTAATATTCTCAAAGAAATGGCGGCACAGTATTCCATCCATTGCTTCCTCTTAGATGAATCCGCATCCTCTACAGACGATGCTATACGTGAGGTTATGCTAGCTTGGCCTAATACCCGAGGCTGTATTTTGTATATAGTATCCAACAACAAGGAATACATGTTTCCTAAACTAAGCAAATGCGGTTGGCTTATCACGCTTCTGAATGTTGAAGGCAGCCCCGCGTCCACATGTGAGAGTTCAAGCATGGTGTATATCAACAAACTACGCGAGTTGCCTTTGACTATTTGCCAAATAAATAGAAAGGCATTTGGAAACAGCATTGTGACAGTTGGTTATATTATGAAGCCGTCTCGTGAAGGGGATTTCGCTAAGAGGGGTGCATTCCCTATGTATCCTACTCAAGATGGGTTGATGTTCGTTCCCCTCACATTTGATCTCCCTCTAGCACCTCAATTACAAGAAGTTGATGTAGTTCTCCATAAAGCAACCGATGAAATTATATCCATTAATTTGGATGGATCTTTACCATCTTCTACCAGCATAACATACAGCAGGGGAATGCAGGAATTGCAAAGATATATGGAACATCACCTAGACCTCTGTGTGATTGACCCACTTAGCTCTATCTATCCTGTAGTAGATCGATTGAAAATTCAACAGATTCTACTTGGGTTGGAGGATCTCAAAACCGCCGGTTGCTGCGCAATTAGGGGGCCTAATTTTCTTAAGGTAGATGATTTTAATCAGTCTGATTTGGTTCAAAGCCTATCTGAAGCTAAGTTAGCTCTTCCAAGTATAGTAAAACCTCAAGTTGCTTGTGGTGTGGCTGATGCTCACAGCATGGCAATAGTTTTTAGAGTTGAAGATTTCAAGGATTTGACTGTTCCTCTTCCAGCAATTATACAGGAATATGTGGATCATTCATCAACGCTCTACAAATTTTACGTGTTGGGTGAGAAAGTTTATCATGCAGTTAAGAGCTCTACTCCAAATGCAGATGGTTTGAAGAAATTATCTGGAAGTAAGGAGCTCAAACCTTTAGTCTTTGACAGCTTAAAATCCTTACCCACTGCCAAAGGGAACCTGAGTTCTGGAGTTGGTAATAGCTCAAAGGCCACTATTGATCTTGAGTTGGTTACTAGTGCAGCTAATTGGCTTATGAGAAATCTTGAGCTGACCATCTTCGGCTTTGATGTTGTTATTGAGGAAGGCACCGGCGACCATGTCATTGTCGATGTAAATTACCTCCCATCATTCAAGGAAGTTCCCAACGAAGTTGCTATCCCTGCGTTTTGGGGTGCGATTAAGAAGAAGTTTGAATTAAGAGGAAGAAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0047325 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 map00562

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

505

Amino Acids

55.17

Weight (kDa)

5.88

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43980
fragaria_vesca	FvH4_1g00201
malus_domestica	MD00G1087100.v1.1 MD15G1143000.v1.1
prunus_persica	Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1
pyrus_communis	pycom15g12910
rosa_chinensis	RchiOBHm_Chr2g0084491
rosa_laevigata	RLG00000015622
rosa_multiflora	Rmu_sc0003974.1_g000001 Rmu_sc0009647.1_g000006
rosa_roxburghii	Rroxscaffold_2G00156020
rosa_rugosa	Rorug01G0454400 Rorug01G0454500
rosa_samantha	Rh2AG002500 Rh2BG002100 Rh2CG002600 Rh2DG002600
rosa_wichuraiana	Rw2G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	877
Acc36I	ACCTGC	1 cut(s)	143
Acc65I	GGTACC	1 cut(s)	65
AccB1I	GGYRCC	2 cut(s)	65, 1385
AccII	CGCG	2 cut(s)	395, 441
AciI	CCGC	7 cut(s)	15, 21, 194, 234, 354, 393, 864
AclWI	GGATC	3 cut(s)	700, 861, 1098
AcsI	RAATTY	3 cut(s)	138, 825, 1112
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	54, 67
AflII	CTTAAG	1 cut(s)	899
AflIII	ACRYGT	3 cut(s)	330, 401, 1119
AhlI	ACTAGT	1 cut(s)	1313
AloI	GAACNNNNNNTCC	2 cut(s)	1246, 1278
Alw21I	GWGCWC	2 cut(s)	1157, 1206
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	3 cut(s)	700, 861, 1098
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	3 cut(s)	278, 887, 1287
ApeKI	GCWGC	3 cut(s)	387, 873, 1319
ApoI	RAATTY	3 cut(s)	138, 825, 1112
ArsI	GACNNNNNNTTYG	2 cut(s)	1200, 1232
AseI	ATTAAT	1 cut(s)	681
Asp718I	GGTACC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	878
AspS9I	GGNCC	1 cut(s)	887
AsuHPI	GGTGA	2 cut(s)	755, 1139
AsuNHI	GCTAGC	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	288
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BanI	GGYRCC	2 cut(s)	65, 1385
BanII	GRGCYC	2 cut(s)	1157, 1206
BauI	CACGAG	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	1157, 1206
BbvI	GCAGC	3 cut(s)	399, 860, 1331
BccI	CCATC	7 cut(s)	215, 572, 683, 709, 1166, 1361, 1432
BceAI	ACGGC	1 cut(s)	505
BciVI	GTATCC	2 cut(s)	322, 576
BcoDI	GTCTC	1 cut(s)	528
BcuI	ACTAGT	1 cut(s)	1313
BfaI	CTAG	4 cut(s)	272, 617, 767, 1314
BfmI	CTRYAG	2 cut(s)	243, 807
BfrI	CTTAAG	1 cut(s)	899
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	2 cut(s)	322, 576
BisI	GCNGC	4 cut(s)	195, 388, 874, 1320
BlsI	GCNGC	4 cut(s)	196, 389, 875, 1321
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	4 cut(s)	67, 888, 1256, 1387
BmsI	GCATC	3 cut(s)	241, 245, 994
BmtI	GCTAGC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	1144, 1176
BpmI	CTGGAG	1 cut(s)	1287
BpuEI	CTTGAG	4 cut(s)	558, 966, 1322, 1364
Bsa29I	ATCGAT	1 cut(s)	817
BsaAI	YACGTR	2 cut(s)	260, 1120
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	289
Bse118I	RCCGGY	2 cut(s)	866, 1388
Bse3DI	GCAATG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	915
BseCI	ATCGAT	1 cut(s)	817
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	207, 236, 694
BseJI	GATNNNNATC	1 cut(s)	915
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	1250
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	399, 860, 1331
BsgI	GTGCAG	1 cut(s)	1338
Bsh1236I	CGCG	2 cut(s)	395, 441
BshFI	GGCC	3 cut(s)	280, 889, 1289
BshNI	GGYRCC	2 cut(s)	65, 1385
BshVI	ATCGAT	1 cut(s)	817
BsiHKAI	GWGCWC	2 cut(s)	1157, 1206
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	867, 1389
BsmAI	GTCTC	1 cut(s)	528
BsmBI	CGTCTC	1 cut(s)	528
BsmI	GAATGC	2 cut(s)	554, 738
BsnI	GGCC	3 cut(s)	280, 889, 1289
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	1157, 1206
Bsp143I	GATC	6 cut(s)	607, 692, 814, 853, 1090, 1297
BspACI	CCGC	7 cut(s)	15, 21, 194, 234, 354, 393, 864
BspANI	GGCC	3 cut(s)	280, 889, 1289
BspCNI	CTCAG	1 cut(s)	1251
BspDI	ATCGAT	1 cut(s)	817
BspFNI	CGCG	2 cut(s)	395, 441
BspLI	GGNNCC	4 cut(s)	67, 888, 1256, 1387
BspMI	ACCTGC	1 cut(s)	143
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	3 cut(s)	700, 861, 1098
BspQI	GCTCTTC	1 cut(s)	966
BspT107I	GGYRCC	2 cut(s)	65, 1385
BspTI	CTTAAG	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	2 cut(s)	866, 1388
BssAI	RCCGGY	2 cut(s)	866, 1388
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	6 cut(s)	607, 692, 814, 853, 1090, 1297
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	201, 502, 1057
Bst6I	CTCTTC	2 cut(s)	966, 1068
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	899
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstBAI	YACGTR	2 cut(s)	260, 1120
BstC8I	GCNNGC	2 cut(s)	7, 273
BstDEI	CTNAG	6 cut(s)	223, 344, 543, 791, 951, 1259
BstF5I	GGATG	3 cut(s)	207, 236, 694
BstFNI	CGCG	2 cut(s)	395, 441
BstHHI	GCGC	1 cut(s)	878
BstKTI	GATC	6 cut(s)	610, 695, 817, 856, 1093, 1300
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	6 cut(s)	607, 692, 814, 853, 1090, 1297
BstMWI	GCNNNNNNNGC	6 cut(s)	109, 277, 367, 742, 956, 1460
BstNSI	RCATGY	2 cut(s)	334, 405
BstSFI	CTRYAG	2 cut(s)	243, 807
BstUI	CGCG	2 cut(s)	395, 441
BstV1I	GCAGC	3 cut(s)	399, 860, 1331
BstX2I	RGATCY	2 cut(s)	692, 853
BstXI	CCANNNNNNTGG	1 cut(s)	685
BstYI	RGATCY	2 cut(s)	692, 853
Bsu15I	ATCGAT	1 cut(s)	817
BsuI	GTATCC	2 cut(s)	322, 576
BsuRI	GGCC	3 cut(s)	280, 889, 1289
BsuTUI	ATCGAT	1 cut(s)	817
BtsCI	GGATG	3 cut(s)	207, 236, 694
BtsI	GCAGTG	1 cut(s)	1242
BtsIMutI	CAGTG	1 cut(s)	1242
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	7, 273
CfoI	GCGC	1 cut(s)	878
Cfr10I	RCCGGY	2 cut(s)	866, 1388
Cfr13I	GGNCC	1 cut(s)	887
ClaI	ATCGAT	1 cut(s)	817
CseI	GACGC	2 cut(s)	98, 384
Csp6I	GTAC	2 cut(s)	53, 66
CviAII	CATG	7 cut(s)	119, 331, 402, 418, 1015, 1142, 1397
CviQI	GTAC	2 cut(s)	53, 66
DdeI	CTNAG	6 cut(s)	223, 344, 543, 791, 951, 1259
DpnI	GATC	6 cut(s)	609, 694, 816, 855, 1092, 1299
DpnII	GATC	6 cut(s)	607, 692, 814, 853, 1090, 1297
Eam1104I	CTCTTC	2 cut(s)	966, 1068
EarI	CTCTTC	2 cut(s)	966, 1068
Ecl136II	GAGCTC	2 cut(s)	1155, 1204
Eco24I	GRGCYC	2 cut(s)	1157, 1206
Eco53kI	GAGCTC	2 cut(s)	1155, 1204
Eco57I	CTGAAG	1 cut(s)	966
Eco88I	CYCGRG	1 cut(s)	288
EcoICRI	GAGCTC	2 cut(s)	1155, 1204
EcoO109I	RGGNCCY	1 cut(s)	887
EcoT38I	GRGCYC	2 cut(s)	1157, 1206
Esp3I	CGTCTC	1 cut(s)	528
FaeI	CATG	7 cut(s)	122, 334, 405, 421, 1018, 1145, 1400
FatI	CATG	7 cut(s)	118, 330, 401, 417, 1014, 1141, 1396
FauI	CCCGC	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	195, 388, 874, 1320
FokI	GGATG	3 cut(s)	194, 223, 701
FriOI	GRGCYC	2 cut(s)	1157, 1206
Fsp4HI	GCNGC	4 cut(s)	195, 388, 874, 1320
FspBI	CTAG	4 cut(s)	272, 617, 767, 1314
FspI	TGCGCA	1 cut(s)	877
GlaI	GCGC	1 cut(s)	877
GluI	GCNGC	4 cut(s)	195, 388, 874, 1320
GsuI	CTGGAG	1 cut(s)	1287
HaeIII	GGCC	3 cut(s)	280, 889, 1289
HapII	CCGG	2 cut(s)	867, 1389
HgaI	GACGC	2 cut(s)	98, 384
HhaI	GCGC	1 cut(s)	878
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	7 cut(s)	122, 334, 405, 421, 1018, 1145, 1400
Hin6I	GCGC	1 cut(s)	876
HinP1I	GCGC	1 cut(s)	876
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	230, 835
HpaII	CCGG	2 cut(s)	867, 1389
HphI	GGTGA	2 cut(s)	755, 1139
Hpy166II	GTNNAC	3 cut(s)	53, 76, 399
Hpy188I	TCNGA	4 cut(s)	88, 375, 925, 946
Hpy188III	TCNNGA	7 cut(s)	158, 527, 575, 1191, 1266, 1301, 1343
Hpy8I	GTNNAC	3 cut(s)	53, 76, 399
HpyAV	CCTTC	3 cut(s)	377, 524, 1376
HpyCH4III	ACNGT	3 cut(s)	201, 502, 1057
HpyCH4IV	ACGT	2 cut(s)	259, 1119
HpyCH4V	TGCA	7 cut(s)	82, 554, 736, 745, 1145, 1169, 1319
HpyF10VI	GCNNNNNNNGC	6 cut(s)	109, 277, 367, 742, 956, 1460
HpyF3I	CTNAG	6 cut(s)	223, 344, 543, 791, 951, 1259
HpySE526I	ACGT	2 cut(s)	259, 1119
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	7 cut(s)	122, 334, 405, 421, 1018, 1145, 1400
HspAI	GCGC	1 cut(s)	876
KpnI	GGTACC	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	607, 692, 814, 853, 1090, 1297
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	2 cut(s)	149, 1201
Lsp1109I	GCAGC	3 cut(s)	399, 860, 1331
LweI	GCATC	3 cut(s)	241, 245, 994
MaeI	CTAG	4 cut(s)	272, 617, 767, 1314
MaeII	ACGT	2 cut(s)	259, 1119
MaeIII	GTNAC	2 cut(s)	496, 1309
MalI	GATC	6 cut(s)	609, 694, 816, 855, 1092, 1299
MboI	GATC	6 cut(s)	607, 692, 814, 853, 1090, 1297
MboII	GAAGA	8 cut(s)	696, 953, 1049, 1055, 1192, 1348, 1495, 1515
MflI	RGATCY	2 cut(s)	692, 853
MhlI	GDGCHC	2 cut(s)	1157, 1206
MmeI	TCCRAC	2 cut(s)	339, 828
MseI	TTAA	8 cut(s)	174, 681, 900, 915, 1149, 1229, 1479, 1496
MspCI	CTTAAG	1 cut(s)	899
MspI	CCGG	2 cut(s)	867, 1389
Mva1269I	GAATGC	2 cut(s)	554, 738
MvnI	CGCG	2 cut(s)	395, 441
MwoI	GCNNNNNNNGC	6 cut(s)	109, 277, 367, 742, 956, 1460
NdeII	GATC	6 cut(s)	607, 692, 814, 853, 1090, 1297
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	7 cut(s)	122, 334, 405, 421, 1018, 1145, 1400
NlaIV	GGNNCC	4 cut(s)	67, 888, 1256, 1387
NmuCI	GTSAC	1 cut(s)	496
NsbI	TGCGCA	1 cut(s)	877
NspI	RCATGY	2 cut(s)	334, 405
PciI	ACATGT	2 cut(s)	330, 401
PciSI	GCTCTTC	1 cut(s)	966
PctI	GAATGC	2 cut(s)	554, 738
PfeI	GAWTC	2 cut(s)	230, 835
PflFI	GACNNNGTC	1 cut(s)	1397
PkrI	GCNGC	4 cut(s)	196, 389, 875, 1321
Ppu21I	YACGTR	2 cut(s)	260, 1120
PscI	ACATGT	2 cut(s)	330, 401
PshBI	ATTAAT	1 cut(s)	681
Psp124BI	GAGCTC	2 cut(s)	1157, 1206
PspN4I	GGNNCC	4 cut(s)	67, 888, 1256, 1387
PspPI	GGNCC	1 cut(s)	887
PsuI	RGATCY	2 cut(s)	692, 853
PsyI	GACNNNGTC	1 cut(s)	1397
RsaI	GTAC	2 cut(s)	54, 67
RsaNI	GTAC	2 cut(s)	53, 66
SacI	GAGCTC	2 cut(s)	1157, 1206
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	8 cut(s)	174, 681, 900, 915, 1149, 1229, 1479, 1496
SatI	GCNGC	4 cut(s)	195, 388, 874, 1320
Sau3AI	GATC	6 cut(s)	607, 692, 814, 853, 1090, 1297
Sau96I	GGNCC	1 cut(s)	887
SduI	GDGCHC	2 cut(s)	1157, 1206
SfaNI	GCATC	3 cut(s)	241, 245, 994
SfcI	CTRYAG	2 cut(s)	243, 807
SgrAI	CRCCGGYG	1 cut(s)	1388
SmlI	CTYRAG	5 cut(s)	573, 899, 981, 1301, 1343
SmoI	CTYRAG	5 cut(s)	573, 899, 981, 1301, 1343
SpeI	ACTAGT	1 cut(s)	1313
SsiI	CCGC	7 cut(s)	15, 21, 194, 234, 354, 393, 864
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	4 cut(s)	272, 617, 767, 1314
SstI	GAGCTC	2 cut(s)	1157, 1206
TaaI	ACNGT	3 cut(s)	201, 502, 1057
TaiI	ACGT	2 cut(s)	262, 1122
TaqI	TCGA	2 cut(s)	817, 1407
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	230, 835
Tru1I	TTAA	8 cut(s)	174, 681, 900, 915, 1149, 1229, 1479, 1496
Tru9I	TTAA	8 cut(s)	174, 681, 900, 915, 1149, 1229, 1479, 1496
TscAI	CASTG	1 cut(s)	1249
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	3 cut(s)	387, 873, 1319
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	5 cut(s)	95, 243, 530, 681, 1086
TspRI	CASTG	1 cut(s)	1249
Tth111I	GACNNNGTC	1 cut(s)	1397
Vha464I	CTTAAG	1 cut(s)	899
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	3 cut(s)	138, 825, 1112
XceI	RCATGY	2 cut(s)	334, 405
XspI	CTAG	4 cut(s)	272, 617, 767, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.