Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009330

Physical Location & Seq

Genomic Coordinates Forward (+)

17763558 .. 17767864

Gene Structure 4307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1087100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCGTTGGCTGATCACCCTTCTAAATGTTGAAGGCAGCACCGCATCCACGTGTGAGAGTTCAAGCATGGTGTACGTCAACAAACTACACGAGTTGCCTTTGACTATTTTCCAAATAAATAGAAAGGTTTTTCAGATGACAGTTGGTTATATTATGAAGCCTTCTCATGAAGAGGATTTTGCTAAGAGGGGTGCATTCCCTATGTATCCTACTCAAGGCAGGCTGATGTTCGTTCCCCTCACATTTGATCTCCCTCTAGCACCTCAGTTGCAAGAAGTTGATGTAGTTCTCCATAAAGCAACCGATGAAATTATATCCATTAATTTGGATAACTCTGTACTATCTTCTAACAGCATAACTTACAGCAGGGGATGCAGGAATTGCAAAGTAAGATCGTTTGAAATTCAACAGATTCTACTTGGGTTGGAGGATCTCAAAGCCGCAGGTTGCTGCACAATTAGGGGGCCTAATTTTCTAGGGTGTGTTGATGATTTTAACCAGTCTGATTTGGTTAAAAGGCTCTCCAAAGCTAAATTAGCTCTTAGTAAAACCTCAAGTTGCTTGTGGTGTGGCTGGTGCTCCCAGCATGCAATTATACAGGAATATGTGGATCATTCATCAACACTCTACAAATTTTATGTCTTGGGCGAGAAAGTTTATCATGTGGTTAAGAGCTCTACTCCAAATGCAGATGGCTTGAAGAAATTATCTGGGAGTAATGAGCTCAAACCGTTAGTCTTTGACAGCTTAAAATCCTTATCCACTGCCAAAGGGAACCTGAATTTTGGAGATGGTAATAGCTCAAAGGCCACTAATAACTGCACTGATCTTGAGTTGGTTACTAGTGCAGCTAATTGGCTTATGAGAAAGCTTGGACTGACCATCTTCAGCTTCGATGTTGTTATTGAGGAAGGCACCGGTGACCATGTCATTGTTGATGTAAATTACCTCCCATCATTCAAAGAAGTTTCCAACGAAGTTGCTATCCCTGCGTTTAGGGTTGCGATTAATAAGAAATTTGAATTAAAAAGGAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0047325 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 map00562

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

347

Amino Acids

38.6

Weight (kDa)

8.43

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin	PF05770	198 - 325	3.7e-16	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43980
fragaria_vesca	FvH4_1g00201
malus_domestica	MD00G1087100.v1.1 MD15G1143000.v1.1
prunus_persica	Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1
pyrus_communis	pycom15g12910
rosa_chinensis	RchiOBHm_Chr2g0084491
rosa_laevigata	RLG00000015622
rosa_multiflora	Rmu_sc0003974.1_g000001 Rmu_sc0009647.1_g000006
rosa_roxburghii	Rroxscaffold_2G00156020
rosa_rugosa	Rorug01G0454400 Rorug01G0454500
rosa_samantha	Rh2AG002500 Rh2BG002100 Rh2CG002600 Rh2DG002600
rosa_wichuraiana	Rw2G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	914
AciI	CCGC	2 cut(s)	42, 441
AclWI	GGATC	2 cut(s)	438, 618
AcsI	RAATTY	4 cut(s)	402, 632, 781, 1016
AcuI	CTGAAG	1 cut(s)	871
AcvI	CACGTG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	74, 339
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	50
AgeI	ACCGGT	1 cut(s)	917
AgsI	TTSAA	7 cut(s)	32, 63, 401, 407, 700, 961, 1022
AhlI	ACTAGT	1 cut(s)	842
AluBI	AGCT	9 cut(s)	530, 539, 675, 724, 747, 801, 851, 871, 891
AluI	AGCT	9 cut(s)	530, 539, 675, 724, 747, 801, 851, 871, 891
Alw21I	GWGCWC	3 cut(s)	581, 677, 726
AlwI	GGATC	2 cut(s)	438, 618
AoxI	GGCC	2 cut(s)	464, 807
ApeKI	GCWGC	3 cut(s)	36, 450, 848
ApoI	RAATTY	4 cut(s)	402, 632, 781, 1016
ArsI	GACNNNNNNTTYG	4 cut(s)	624, 656, 720, 752
AseI	ATTAAT	2 cut(s)	321, 1008
AsiGI	ACCGGT	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	7, 932
BanI	GGYRCC	1 cut(s)	914
BanII	GRGCYC	2 cut(s)	677, 726
BauI	CACGAG	1 cut(s)	89
BbrPI	CACGTG	1 cut(s)	51
Bbv12I	GWGCWC	3 cut(s)	581, 677, 726
BbvI	GCAGC	3 cut(s)	48, 437, 860
BccI	CCATC	4 cut(s)	686, 785, 890, 961
BciVI	GTATCC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	3 cut(s)	257, 476, 843
BfuAI	ACCTGC	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	4 cut(s)	37, 441, 451, 849
BlsI	GCNGC	4 cut(s)	38, 442, 452, 850
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	3 cut(s)	465, 776, 916
BmsI	GCATC	2 cut(s)	53, 362
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BpuEI	CTTGAG	3 cut(s)	198, 538, 851
BsaAI	YACGTR	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	917
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	1 cut(s)	499
BseGI	GGATG	2 cut(s)	44, 377
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	48, 437, 860
BseYI	CCCAGC	1 cut(s)	582
BsgI	GTGCAG	3 cut(s)	436, 805, 867
BshFI	GGCC	2 cut(s)	466, 809
BshNI	GGYRCC	1 cut(s)	914
BshTI	ACCGGT	1 cut(s)	917
BsiHKAI	GWGCWC	3 cut(s)	581, 677, 726
BsiSI	CCGG	1 cut(s)	918
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	466, 809
Bsp1286I	GDGCHC	3 cut(s)	581, 677, 726
Bsp143I	GATC	6 cut(s)	12, 247, 392, 430, 610, 826
BspACI	CCGC	2 cut(s)	42, 441
BspANI	GGCC	2 cut(s)	466, 809
BspCNI	CTCAG	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	465, 776, 916
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	438, 618
BspT107I	GGYRCC	1 cut(s)	914
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	1 cut(s)	499
BssAI	RCCGGY	1 cut(s)	917
BssMI	GATC	6 cut(s)	12, 247, 392, 430, 610, 826
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	142, 732
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	2 cut(s)	372, 381
BstBAI	YACGTR	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	221, 588
BstDEI	CTNAG	3 cut(s)	183, 264, 542
BstEII	GGTNACC	1 cut(s)	920
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	44, 377
BstKTI	GATC	6 cut(s)	15, 250, 395, 433, 613, 829
BstMBI	GATC	6 cut(s)	12, 247, 392, 430, 610, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	372, 381, 536, 989
BstNSI	RCATGY	1 cut(s)	590
BstPI	GGTNACC	1 cut(s)	920
BstV1I	GCAGC	3 cut(s)	48, 437, 860
BstX2I	RGATCY	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	466, 809
BtsCI	GGATG	2 cut(s)	44, 377
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	762, 822
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	2 cut(s)	221, 588
CciI	TCATGA	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	73, 338
CspAI	ACCGGT	1 cut(s)	917
CviAII	CATG	5 cut(s)	67, 167, 587, 662, 926
CviQI	GTAC	2 cut(s)	73, 338
DdeI	CTNAG	3 cut(s)	183, 264, 542
DpnI	GATC	6 cut(s)	14, 249, 394, 432, 612, 828
DpnII	GATC	6 cut(s)	12, 247, 392, 430, 610, 826
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Ecl136II	GAGCTC	2 cut(s)	675, 724
Eco24I	GRGCYC	2 cut(s)	677, 726
Eco53kI	GAGCTC	2 cut(s)	675, 724
Eco57I	CTGAAG	1 cut(s)	871
Eco72I	CACGTG	1 cut(s)	51
Eco91I	GGTNACC	1 cut(s)	920
EcoICRI	GAGCTC	2 cut(s)	675, 724
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	920
EcoT38I	GRGCYC	2 cut(s)	677, 726
FaeI	CATG	5 cut(s)	70, 170, 590, 665, 929
FatI	CATG	5 cut(s)	66, 166, 586, 661, 925
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	37, 441, 451, 849
FokI	GGATG	2 cut(s)	31, 384
FriOI	GRGCYC	2 cut(s)	677, 726
Fsp4HI	GCNGC	4 cut(s)	37, 441, 451, 849
FspBI	CTAG	3 cut(s)	257, 476, 843
GluI	GCNGC	4 cut(s)	37, 441, 451, 849
GsaI	CCCAGC	1 cut(s)	586
HaeIII	GGCC	2 cut(s)	466, 809
HapII	CCGG	1 cut(s)	918
Hin1II	CATG	5 cut(s)	70, 170, 590, 665, 929
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	918
HphI	GGTGA	2 cut(s)	7, 932
Hpy166II	GTNNAC	2 cut(s)	73, 79
Hpy188I	TCNGA	2 cut(s)	135, 505
Hpy188III	TCNNGA	2 cut(s)	167, 830
Hpy8I	GTNNAC	2 cut(s)	73, 79
HpyAV	CCTTC	4 cut(s)	26, 29, 171, 905
HpyCH4III	ACNGT	2 cut(s)	142, 732
HpyCH4IV	ACGT	2 cut(s)	50, 75
HpyCH4V	TGCA	9 cut(s)	194, 271, 375, 384, 453, 590, 689, 822, 848
HpyF10VI	GCNNNNNNNGC	4 cut(s)	372, 381, 536, 989
HpyF3I	CTNAG	3 cut(s)	183, 264, 542
HpySE526I	ACGT	2 cut(s)	50, 75
Hsp92II	CATG	5 cut(s)	70, 170, 590, 665, 929
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	6 cut(s)	12, 247, 392, 430, 610, 826
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	3 cut(s)	48, 437, 860
LweI	GCATC	2 cut(s)	53, 362
MaeI	CTAG	3 cut(s)	257, 476, 843
MaeII	ACGT	2 cut(s)	50, 75
MaeIII	GTNAC	2 cut(s)	838, 920
MalI	GATC	6 cut(s)	14, 249, 394, 432, 612, 828
MboI	GATC	6 cut(s)	12, 247, 392, 430, 610, 826
MboII	GAAGA	4 cut(s)	182, 336, 712, 877
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	3 cut(s)	581, 677, 726
MmeI	TCCRAC	2 cut(s)	405, 996
MseI	TTAA	7 cut(s)	321, 495, 513, 669, 749, 1008, 1025
MslI	CAYNNNNRTG	1 cut(s)	49
MspI	CCGG	1 cut(s)	918
Mva1269I	GAATGC	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	372, 381, 536, 989
NdeII	GATC	6 cut(s)	12, 247, 392, 430, 610, 826
NlaIII	CATG	5 cut(s)	70, 170, 590, 665, 929
NlaIV	GGNNCC	3 cut(s)	465, 776, 916
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	1 cut(s)	590
PaeI	GCATGC	1 cut(s)	590
PagI	TCATGA	1 cut(s)	166
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	412
PflFI	GACNNNGTC	1 cut(s)	926
PinAI	ACCGGT	1 cut(s)	917
PkrI	GCNGC	4 cut(s)	38, 442, 452, 850
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	51
PshBI	ATTAAT	2 cut(s)	321, 1008
Psp124BI	GAGCTC	2 cut(s)	677, 726
PspCI	CACGTG	1 cut(s)	51
PspEI	GGTNACC	1 cut(s)	920
PspFI	CCCAGC	1 cut(s)	582
PspN4I	GGNNCC	3 cut(s)	465, 776, 916
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	926
RsaI	GTAC	2 cut(s)	74, 339
RsaNI	GTAC	2 cut(s)	73, 338
RseI	CAYNNNNRTG	1 cut(s)	49
SacI	GAGCTC	2 cut(s)	677, 726
SaqAI	TTAA	7 cut(s)	321, 495, 513, 669, 749, 1008, 1025
SatI	GCNGC	4 cut(s)	37, 441, 451, 849
Sau3AI	GATC	6 cut(s)	12, 247, 392, 430, 610, 826
Sau96I	GGNCC	1 cut(s)	464
SduI	GDGCHC	3 cut(s)	581, 677, 726
SfaNI	GCATC	2 cut(s)	53, 362
SgrAI	CRCCGGYG	1 cut(s)	917
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	3 cut(s)	213, 553, 830
SmoI	CTYRAG	3 cut(s)	213, 553, 830
SpeI	ACTAGT	1 cut(s)	842
SphI	GCATGC	1 cut(s)	590
SsiI	CCGC	2 cut(s)	42, 441
SspMI	CTAG	3 cut(s)	257, 476, 843
SstI	GAGCTC	2 cut(s)	677, 726
TaaI	ACNGT	2 cut(s)	142, 732
TaiI	ACGT	2 cut(s)	53, 78
TaqI	TCGA	1 cut(s)	894
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	7 cut(s)	321, 495, 513, 669, 749, 1008, 1025
Tru9I	TTAA	7 cut(s)	321, 495, 513, 669, 749, 1008, 1025
TscAI	CASTG	2 cut(s)	769, 829
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	3 cut(s)	36, 450, 848
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	4 cut(s)	170, 183, 321, 606
TspRI	CASTG	2 cut(s)	769, 829
Tth111I	GACNNNGTC	1 cut(s)	926
VspI	ATTAAT	2 cut(s)	321, 1008
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	4 cut(s)	402, 632, 781, 1016
XceI	RCATGY	1 cut(s)	590
XspI	CTAG	3 cut(s)	257, 476, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.