FvH4_1g00430

BTB POZ and TAZ domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
238997 .. 242668
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00430.t3

Sequence Viewer

Length: 1230 bp
ATGATGGCTTCACCTGCTCTTGACTCGCCCTGGCCAACCTCGGCAAGAGAGTCATTATTTTGTGGATCTTTCAATATACATATGGAGGAAGAGATTCCTGCCGATATTATACCTGTGCTGGAAGACCCGACCTCTTCTGTGTCCTATAGCCATACTATCCCAAAACCACCTCCTGTTCCTATTAATGCCTATGCAGGAAACAAATATATCAAAAGGCTTTCAGGGAGTTGCTCTGTCCCAAAGGAAACAATAGATACATGGGATAAGCTTTTCAAAGAAGGATGTGGCGCTGATGCGTATATTATAACCGAGGGCAACTCATGTATTCCAGCTCATTTGAGTGTACTGACTCTTGCATCACCAGTGCTAGGTAATTTCCTATGGCAATCAAAAGTACAAAATGGAATGAGATACATCAAGATTCCTGGGGTACCTTATGAAGCTATCTACACATTCATTCGCTTTCTTTACTCATCATGCTATGAAAAGGAAGAGATGAAGAAATATGTTCTCCATTTGTTGGTTTTGTCGCACTCCTACTCAGTTCCGTCACTGAAGAGAGTTTGTATATACTTTCTTGAGCAGGGATGGCTTACCAAAGAAAATGTGGTCGACGTGCTTCAATTGGCAAGGAACTGTGATGCACCACGGCTCTCTTTGATCTGTGTACGTATGATTGTGAAGGATTTTAAGGCCATATCTTCAACTGAAGGCTGGAAAGTGATGAAAAAAGTTAATCCTGCACTTGAACAAGAGCTGCTAGAGTTTCTTGTTGAAGCAGATTCTGGGAAAGAGGAGAGGTTGAAGAAAAAAGAAGAGAAAAAAGTATACTTGCAACTGTATGAGGCAATGGAAGCCCTCCTTCATATATGCAAGGATGGATGTAGGACAATTGGTCCCCGTGACAAAGTGTTTAAAGGAAGCCAGGTTGCTTGTGGTTTTCCTGCTTGCAAGGGGCTTGAGACTTTAGTTCGTCATTTTTCCAGCTGTAAAACCCGGGTACCTGGTGGCTGTGTTCACTGCAAACGCATGTGGCAGCTTCTTGAGCTGCACTCTCGTATTTGCAATCAGCCTGATGCATGCAAGGTTCCGTTGTGTAGGCATTTCAAGGAGAAAATGCAGCAGCAGACCAAGAAAGATGAGGCTAAGTGGAAGCTGTTGGTGAGTAAAGTGCTAGCATCAAAGGATGCTCTGTGGCCAATCTCTGGTCCACGGTCAAGTTTATTATGA

Protein Analysis

410

Amino Acids

46.23

Weight (kDa)

8.85

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 88 - 195 2.1e-09 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
Acc65I GGTACC 2 cut(s) 430, 1000
AccB1I GGYRCC 2 cut(s) 430, 1000
AccB7I CCANNNNNTGG 2 cut(s) 520, 1205
AccI GTMKAC 2 cut(s) 612, 828
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 2 cut(s) 32, 1196
AcuI CTGAAG 2 cut(s) 575, 729
AfaI GTAC 5 cut(s) 345, 396, 432, 669, 1002
AfiI CCNNNNNNNGG 3 cut(s) 368, 520, 1205
AgsI TTSAA 8 cut(s) 73, 274, 623, 705, 749, 776, 805, 1108
AhdI GACNNNNNGTC 1 cut(s) 894
AjiI CACGTC 1 cut(s) 616
AjnI CCWGG 4 cut(s) 29, 424, 924, 1003
AluBI AGCT 8 cut(s) 268, 332, 443, 757, 987, 1039, 1048, 1156
AluI AGCT 8 cut(s) 268, 332, 443, 757, 987, 1039, 1048, 1156
Alw26I GTCTC 1 cut(s) 956
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 785
Ama87I CYCGRG 1 cut(s) 996
AoxI GGCC 3 cut(s) 32, 693, 1196
ApeKI GCWGC 5 cut(s) 757, 1036, 1048, 1120, 1123
AseI ATTAAT 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 93
Asp718I GGTACC 2 cut(s) 430, 1000
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 896, 1208
AsuC2I CCSGG 2 cut(s) 997, 998
AsuHPI GGTGA 3 cut(s) 3, 351, 1174
AsuNHI GCTAGC 1 cut(s) 1174
AvaI CYCGRG 1 cut(s) 996
AvaII GGWCC 2 cut(s) 896, 1208
BaeI ACNNNNGTAYC 2 cut(s) 984, 1017
BalI TGGCCA 2 cut(s) 34, 1198
BanI GGYRCC 2 cut(s) 430, 1000
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 5 cut(s) 744, 1035, 1048, 1132, 1135
BccI CCATC 2 cut(s) 582, 872
BceAI ACGGC 1 cut(s) 665
BciT130I CCWGG 4 cut(s) 31, 426, 926, 1005
BcnI CCSGG 2 cut(s) 997, 998
BcoDI GTCTC 1 cut(s) 956
BfaI CTAG 3 cut(s) 368, 761, 1175
BfmI CTRYAG 1 cut(s) 145
BfoI RGCGCY 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 5 cut(s) 758, 1037, 1049, 1121, 1124
BlsI GCNGC 5 cut(s) 759, 1038, 1050, 1122, 1125
Bme1390I CCNGG 6 cut(s) 31, 426, 926, 997, 998, 1005
Bme18I GGWCC 2 cut(s) 896, 1208
BmeRI GACNNNNNGTC 1 cut(s) 894
BmeT110I CYCGRG 1 cut(s) 996
BmgBI CACGTC 1 cut(s) 616
BmgT120I GGNCC 2 cut(s) 896, 1208
BmiI GGNNCC 4 cut(s) 432, 898, 1002, 1089
BmrFI CCNGG 6 cut(s) 31, 426, 926, 997, 998, 1005
BmsI GCATC 6 cut(s) 283, 365, 631, 1066, 1177, 1187
BmtI GCTAGC 1 cut(s) 1178
BpiI GAAGAC 1 cut(s) 129
BplI GAGNNNNNCTC 4 cut(s) 302, 334, 1037, 1069
BpuEI CTTGAG 3 cut(s) 599, 980, 1064
BpuMI CCSGG 2 cut(s) 997, 998
BsaAI YACGTR 1 cut(s) 671
BsaJI CCNNGG 7 cut(s) 29, 39, 309, 425, 647, 996, 1211
Bsc4I CCNNNNNNNGG 3 cut(s) 368, 520, 1205
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 4 cut(s) 31, 426, 926, 1005
BseDI CCNNGG 7 cut(s) 29, 39, 309, 425, 647, 996, 1211
BseGI GGATG 5 cut(s) 287, 593, 883, 887, 1192
BseLI CCNNNNNNNGG 3 cut(s) 368, 520, 1205
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 809
BseXI GCAGC 5 cut(s) 744, 1035, 1048, 1132, 1135
BsgI GTGCAG 2 cut(s) 726, 1034
BshFI GGCC 3 cut(s) 34, 695, 1198
BshNI GGYRCC 2 cut(s) 430, 1000
BsiHKCI CYCGRG 1 cut(s) 996
BsiSI CCGG 1 cut(s) 997
BslFI GGGAC 2 cut(s) 221, 882
BslI CCNNNNNNNGG 3 cut(s) 368, 520, 1205
BsmAI GTCTC 1 cut(s) 956
BsmFI GGGAC 2 cut(s) 221, 882
BsnI GGCC 3 cut(s) 34, 695, 1198
BsoBI CYCGRG 1 cut(s) 996
Bsp143I GATC 2 cut(s) 65, 660
BspANI GGCC 3 cut(s) 34, 695, 1198
BspCNI CTCAG 1 cut(s) 554
BspLI GGNNCC 4 cut(s) 432, 898, 1002, 1089
BspMI ACCTGC 1 cut(s) 22
BspOI GCTAGC 1 cut(s) 1178
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 2 cut(s) 430, 1000
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 7 cut(s) 29, 39, 309, 425, 647, 996, 1211
BssMI GATC 2 cut(s) 65, 660
BssNAI GTATAC 1 cut(s) 829
Bst1107I GTATAC 1 cut(s) 829
Bst2UI CCWGG 4 cut(s) 31, 426, 926, 1005
Bst4CI ACNGT 3 cut(s) 638, 840, 1215
Bst6I CTCTTC 5 cut(s) 84, 139, 486, 551, 810
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 3 cut(s) 949, 1081, 1176
BstDEI CTNAG 2 cut(s) 541, 1146
BstDSI CCRYGG 2 cut(s) 647, 1211
BstF5I GGATG 5 cut(s) 287, 593, 883, 887, 1192
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 2 cut(s) 68, 663
BstMAI GTCTC 1 cut(s) 956
BstMBI GATC 2 cut(s) 65, 660
BstMWI GCNNNNNNNGC 4 cut(s) 14, 589, 854, 1045
BstNI CCWGG 4 cut(s) 31, 426, 926, 1005
BstNSI RCATGY 2 cut(s) 1033, 1083
BstSCI CCNGG 6 cut(s) 29, 424, 924, 995, 996, 1003
BstSFI CTRYAG 1 cut(s) 145
BstSNI TACGTA 1 cut(s) 671
BstV1I GCAGC 5 cut(s) 744, 1035, 1048, 1132, 1135
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BstZ17I GTATAC 1 cut(s) 829
BsuRI GGCC 3 cut(s) 34, 695, 1198
BtgI CCRYGG 2 cut(s) 647, 1211
BtrI CACGTC 1 cut(s) 616
BtsCI GGATG 5 cut(s) 287, 593, 883, 887, 1192
BtsI GCAGTG 1 cut(s) 1018
BtsIMutI CAGTG 3 cut(s) 369, 551, 1018
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 949, 1081, 1176
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 896, 1208
Cfr9I CCCGGG 1 cut(s) 996
CsiI ACCWGGT 1 cut(s) 1003
Csp6I GTAC 5 cut(s) 344, 395, 431, 668, 1001
CviAII CATG 5 cut(s) 258, 321, 477, 1030, 1080
CviQI GTAC 5 cut(s) 344, 395, 431, 668, 1001
DdeI CTNAG 2 cut(s) 541, 1146
DpnI GATC 2 cut(s) 67, 662
DpnII GATC 2 cut(s) 65, 660
DraI TTTAAA 1 cut(s) 916
DriI GACNNNNNGTC 1 cut(s) 894
EaeI YGGCCR 2 cut(s) 32, 1196
Eam1104I CTCTTC 5 cut(s) 84, 139, 486, 551, 810
Eam1105I GACNNNNNGTC 1 cut(s) 894
EarI CTCTTC 5 cut(s) 84, 139, 486, 551, 810
Eco105I TACGTA 1 cut(s) 671
Eco47I GGWCC 2 cut(s) 896, 1208
Eco57I CTGAAG 2 cut(s) 575, 729
Eco88I CYCGRG 1 cut(s) 996
EcoRII CCWGG 4 cut(s) 29, 424, 924, 1003
EcoT22I ATGCAT 1 cut(s) 1081
FaeI CATG 5 cut(s) 261, 324, 480, 1033, 1083
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 2 cut(s) 221, 882
FatI CATG 5 cut(s) 257, 320, 476, 1029, 1079
FauNDI CATATG 1 cut(s) 81
FblI GTMKAC 2 cut(s) 612, 828
Fnu4HI GCNGC 5 cut(s) 758, 1037, 1049, 1121, 1124
FokI GGATG 5 cut(s) 294, 600, 890, 894, 1199
Fsp4HI GCNGC 5 cut(s) 758, 1037, 1049, 1121, 1124
FspBI CTAG 3 cut(s) 368, 761, 1175
GlaI GCGC 1 cut(s) 289
GluI GCNGC 5 cut(s) 758, 1037, 1049, 1121, 1124
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 3 cut(s) 34, 695, 1198
HapII CCGG 1 cut(s) 997
HhaI GCGC 1 cut(s) 290
Hin1II CATG 5 cut(s) 261, 324, 480, 1033, 1083
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 6 cut(s) 23, 50, 94, 349, 421, 782
HpaII CCGG 1 cut(s) 997
HphI GGTGA 3 cut(s) 3, 351, 1174
Hpy166II GTNNAC 6 cut(s) 344, 613, 668, 829, 1018, 1211
Hpy188III TCNNGA 4 cut(s) 20, 418, 578, 1043
Hpy8I GTNNAC 6 cut(s) 344, 613, 668, 829, 1018, 1211
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 4 cut(s) 272, 676, 704, 872
HpyCH4III ACNGT 3 cut(s) 638, 840, 1215
HpyCH4IV ACGT 2 cut(s) 615, 670
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 589, 854, 1045
HpyF3I CTNAG 2 cut(s) 541, 1146
HpySE526I ACGT 2 cut(s) 615, 670
Hsp92II CATG 5 cut(s) 261, 324, 480, 1033, 1083
HspAI GCGC 1 cut(s) 288
KpnI GGTACC 2 cut(s) 434, 1004
Kzo9I GATC 2 cut(s) 65, 660
Lsp1109I GCAGC 5 cut(s) 744, 1035, 1048, 1132, 1135
LweI GCATC 6 cut(s) 283, 365, 631, 1066, 1177, 1187
MabI ACCWGGT 1 cut(s) 1003
MaeI CTAG 3 cut(s) 368, 761, 1175
MaeII ACGT 2 cut(s) 615, 670
MaeIII GTNAC 2 cut(s) 549, 902
MalI GATC 2 cut(s) 67, 662
MboI GATC 2 cut(s) 65, 660
MboII GAAGA 9 cut(s) 101, 126, 134, 503, 511, 568, 693, 817, 827
MfeI CAATTG 2 cut(s) 623, 891
MflI RGATCY 1 cut(s) 65
MlsI TGGCCA 2 cut(s) 34, 1198
MluCI AATT 3 cut(s) 373, 623, 891
MluNI TGGCCA 2 cut(s) 34, 1198
MlyI GAGTC 3 cut(s) 17, 59, 343
Mox20I TGGCCA 2 cut(s) 34, 1198
Mph1103I ATGCAT 1 cut(s) 1081
MroXI GAANNNNTTC 1 cut(s) 93
MscI TGGCCA 2 cut(s) 34, 1198
MseI TTAA 4 cut(s) 183, 690, 735, 915
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 2 cut(s) 34, 1198
MspA1I CMGCKG 1 cut(s) 987
MspI CCGG 1 cut(s) 997
MspR9I CCNGG 6 cut(s) 31, 426, 926, 997, 998, 1005
MunI CAATTG 2 cut(s) 623, 891
MvaI CCWGG 4 cut(s) 31, 426, 926, 1005
MwoI GCNNNNNNNGC 4 cut(s) 14, 589, 854, 1045
NciI CCSGG 2 cut(s) 997, 998
NdeI CATATG 1 cut(s) 81
NdeII GATC 2 cut(s) 65, 660
NheI GCTAGC 1 cut(s) 1174
NlaIII CATG 5 cut(s) 261, 324, 480, 1033, 1083
NlaIV GGNNCC 4 cut(s) 432, 898, 1002, 1089
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 2 cut(s) 549, 902
NsiI ATGCAT 1 cut(s) 1081
NspI RCATGY 2 cut(s) 1033, 1083
PaeI GCATGC 1 cut(s) 1083
PaqCI CACCTGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 3 cut(s) 94, 421, 782
PflMI CCANNNNNTGG 2 cut(s) 520, 1205
PkrI GCNGC 5 cut(s) 759, 1038, 1050, 1122, 1125
PleI GAGTC 3 cut(s) 17, 58, 343
PpsI GAGTC 3 cut(s) 17, 58, 343
Ppu21I YACGTR 1 cut(s) 671
PshBI ATTAAT 1 cut(s) 183
PsiI TTATAA 1 cut(s) 305
Psp6I CCWGG 4 cut(s) 29, 424, 924, 1003
PspGI CCWGG 4 cut(s) 29, 424, 924, 1003
PspN4I GGNNCC 4 cut(s) 432, 898, 1002, 1089
PspPI GGNCC 2 cut(s) 896, 1208
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 987
RsaI GTAC 5 cut(s) 345, 396, 432, 669, 1002
RsaNI GTAC 5 cut(s) 344, 395, 431, 668, 1001
RseI CAYNNNNRTG 1 cut(s) 339
SalI GTCGAC 1 cut(s) 611
SaqAI TTAA 4 cut(s) 183, 690, 735, 915
SatI GCNGC 5 cut(s) 758, 1037, 1049, 1121, 1124
Sau3AI GATC 2 cut(s) 65, 660
Sau96I GGNCC 2 cut(s) 896, 1208
SchI GAGTC 3 cut(s) 17, 59, 343
ScrFI CCNGG 6 cut(s) 31, 426, 926, 997, 998, 1005
SexAI ACCWGGT 1 cut(s) 1003
SfaNI GCATC 6 cut(s) 283, 365, 631, 1066, 1177, 1187
SfcI CTRYAG 1 cut(s) 145
SinI GGWCC 2 cut(s) 896, 1208
SmaI CCCGGG 1 cut(s) 998
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 3 cut(s) 578, 959, 1043
SmoI CTYRAG 3 cut(s) 578, 959, 1043
SnaBI TACGTA 1 cut(s) 671
SphI GCATGC 1 cut(s) 1083
Sse9I AATT 3 cut(s) 373, 623, 891
SspMI CTAG 3 cut(s) 368, 761, 1175
StyD4I CCNGG 6 cut(s) 29, 424, 924, 995, 996, 1003
TaaI ACNGT 3 cut(s) 638, 840, 1215
TaiI ACGT 2 cut(s) 618, 673
TaqI TCGA 1 cut(s) 612
TasI AATT 3 cut(s) 373, 623, 891
TatI WGTACW 2 cut(s) 343, 394
TfiI GAWTC 3 cut(s) 94, 421, 782
Tru1I TTAA 4 cut(s) 183, 690, 735, 915
Tru9I TTAA 4 cut(s) 183, 690, 735, 915
TscAI CASTG 3 cut(s) 369, 558, 1025
TseFI GTSAC 2 cut(s) 549, 902
TseI GCWGC 5 cut(s) 757, 1036, 1048, 1120, 1123
Tsp45I GTSAC 2 cut(s) 549, 902
TspDTI ATGAA 6 cut(s) 445, 453, 498, 512, 740, 854
TspGWI ACGGA 2 cut(s) 537, 1080
TspMI CCCGGG 1 cut(s) 996
TspRI CASTG 3 cut(s) 369, 558, 1025
Van91I CCANNNNNTGG 2 cut(s) 520, 1205
VpaK11BI GGWCC 2 cut(s) 896, 1208
VspI ATTAAT 1 cut(s) 183
XceI RCATGY 2 cut(s) 1033, 1083
XcmI CCANNNNNNNNNTGG 2 cut(s) 604, 932
XmaI CCCGGG 1 cut(s) 996
XmiI GTMKAC 2 cut(s) 612, 828
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 3 cut(s) 368, 761, 1175
Zsp2I ATGCAT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.