Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008647.1

Orthogroup ID

OG0008004

Physical Location & Seq

Genomic Coordinates Reverse (-)

109620 .. 111866

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008647.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggcttcacctgctcttgactcaccctggccaacctcgactggcgattcattttgtggatctttcaatatacatatggaggaacagaatccggcctatattttacctgtgctggaagacccgacctcttctgtatcctataaccatagtatcccaaaaccacctccagttcctggtaacacccatgcaggaaacaaatctatcaaaaggctttcagagagttgctatgttccaaaggaaacaatagatacatgggataaacttttcaaagaaggatgtggcgctgatgtgtatattatcaccgagggcagatcatacattccagctcatctgagtgttctgactcttgcgtcaccagtgataggtaatttcctacggcaatcaaaagtgcaaaacagtatgagatacgttaagattcctggggtaccttacaaagctgtctacacattcattcgctttctttactcatcatgctatgaaaaggaagagatgaagaaatatgtacttcatttgttggttttgtcacactcctactcagttccatcactgaagagagtttgtatataccttcttgagcagggatggcttaccaaagaaaatgtggtcgatgtgcttcaattggcaaggaactgtgatgcaccacggctctctttaatctgtgtacgtatggttgtgaaggattttaaggccatatcttcaactgaaggctggaaagtgatgaaacaagttaatcctgcacttgaacaagagctgctagagtttgttgttgaagcagattctgggaaagaagagaggttgaagaaaaaggaagagaaaaaagtgtacttgcaactgtatgaggcgatggaggccctccttcacatatgcaaggatggatgtaggacaatagggccgcgtgacaaagtgtttaaaggaggccaggttgcttgtggttttcctgcttgcaaggggcttgaaacattagttcgtcatttctccagctgtaaaacccgggtacctggtggctgtgttcactgcaaacgcatgtggcagcttcttgaactgcactctcgtatttgcaatcagcctgattcatgcaaggttcctttgtgtaggcatttcaaggagaaaatgcagcagcagaccaagaaagatgaggctaaatggaagctgttggtgagtaaagtgatagcatctaaggatgctctatggccaatctctggtcggcggtcaagcttattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

407

Amino Acids

46.06

Weight (kDa)

9.08

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05690
fragaria_vesca	FvH4_1g00430 FvH4_1g00430 FvH4_1g00430 FvH4_1g00430
malus_domestica	MD02G1003500.v1.1 MD15G1146800.v1.1
prunus_persica	Prupe.7G267800_v2.0.a1 Prupe.7G267800_v2.0.a1 Prupe.7G267800_v2.0.a1
pyrus_communis	pycom02g00200 pycom15g13160
rosa_chinensis	RchiOBHm_Chr2g0084941
rosa_laevigata	RLG00000015650
rosa_multiflora	Rmu_co8454519.1_g000001 Rmu_sc0008647.1_g000027
rosa_roxburghii	Rroxscaffold_2G00155700
rosa_rugosa	Rorug01G0457100 Rorug01G0457100
rosa_samantha	Rh2AG004800 Rh2BG006000 Rh2CG006500 Rh2DG006300
rosa_wichuraiana	Rw2G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
AasI	GACNNNNNNGTC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	19
Acc65I	GGTACC	2 cut(s)	424, 994
AccB1I	GGYRCC	2 cut(s)	424, 994
AccB7I	CCANNNNNTGG	2 cut(s)	173, 1199
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	895
AciI	CCGC	2 cut(s)	893, 1207
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	2 cut(s)	29, 1190
AcuI	CTGAAG	2 cut(s)	569, 723
AfaI	GTAC	5 cut(s)	426, 504, 663, 824, 996
AfiI	CCNNNNNNNGG	3 cut(s)	173, 362, 1199
AjnI	CCWGG	5 cut(s)	26, 172, 418, 918, 997
AluBI	AGCT	7 cut(s)	326, 437, 751, 981, 1033, 1150, 1215
AluI	AGCT	7 cut(s)	326, 437, 751, 981, 1033, 1150, 1215
AlwI	GGATC	1 cut(s)	67
AlwNI	CAGNNNCTG	2 cut(s)	173, 779
Ama87I	CYCGRG	1 cut(s)	990
AoxI	GGCC	7 cut(s)	29, 93, 687, 849, 890, 916, 1190
ApeKI	GCWGC	4 cut(s)	751, 1030, 1114, 1117
Asp718I	GGTACC	2 cut(s)	424, 994
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	850, 890
AsuC2I	CCSGG	2 cut(s)	991, 992
AsuHPI	GGTGA	4 cut(s)	15, 292, 345, 1168
AvaI	CYCGRG	1 cut(s)	990
BaeI	ACNNNNGTAYC	4 cut(s)	133, 166, 978, 1011
BalI	TGGCCA	2 cut(s)	31, 1192
BanI	GGYRCC	2 cut(s)	424, 994
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	738, 1042, 1126, 1129
BccI	CCATC	4 cut(s)	550, 576, 838, 866
BceAI	ACGGC	2 cut(s)	392, 659
BciT130I	CCWGG	5 cut(s)	28, 174, 420, 920, 999
BciVI	GTATCC	2 cut(s)	145, 161
BcnI	CCSGG	2 cut(s)	991, 992
BfaI	CTAG	1 cut(s)	755
BfoI	RGCGCY	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	19
BfuI	GTATCC	2 cut(s)	145, 161
BisI	GCNGC	5 cut(s)	752, 893, 1031, 1115, 1118
BlsI	GCNGC	5 cut(s)	753, 894, 1032, 1116, 1119
Bme1390I	CCNGG	7 cut(s)	28, 174, 420, 920, 991, 992, 999
BmeT110I	CYCGRG	1 cut(s)	990
BmgT120I	GGNCC	2 cut(s)	850, 890
BmiI	GGNNCC	3 cut(s)	426, 996, 1083
BmrFI	CCNGG	7 cut(s)	28, 174, 420, 920, 991, 992, 999
BmsI	GCATC	3 cut(s)	625, 1171, 1181
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	2 cut(s)	150, 961
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	2 cut(s)	991, 992
BsaAI	YACGTR	1 cut(s)	665
BsaJI	CCNNGG	5 cut(s)	26, 303, 419, 641, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 362, 1199
Bse1I	ACTGG	3 cut(s)	46, 167, 356
BseBI	CCWGG	5 cut(s)	28, 174, 420, 920, 999
BseDI	CCNNGG	5 cut(s)	26, 303, 419, 641, 990
BseGI	GGATG	5 cut(s)	281, 587, 877, 881, 1186
BseLI	CCNNNNNNNGG	3 cut(s)	173, 362, 1199
BseMII	CTCAG	2 cut(s)	323, 549
BseNI	ACTGG	3 cut(s)	46, 167, 356
BseXI	GCAGC	4 cut(s)	738, 1042, 1126, 1129
BsgI	GTGCAG	2 cut(s)	720, 1028
Bsh1236I	CGCG	1 cut(s)	895
BshFI	GGCC	7 cut(s)	31, 95, 689, 851, 892, 918, 1192
BshNI	GGYRCC	2 cut(s)	424, 994
BsiHKCI	CYCGRG	1 cut(s)	990
BsiSI	CCGG	2 cut(s)	92, 991
BslI	CCNNNNNNNGG	3 cut(s)	173, 362, 1199
BsnI	GGCC	7 cut(s)	31, 95, 689, 851, 892, 918, 1192
BsoBI	CYCGRG	1 cut(s)	990
Bsp143I	GATC	2 cut(s)	59, 311
BspACI	CCGC	2 cut(s)	893, 1207
BspANI	GGCC	7 cut(s)	31, 95, 689, 851, 892, 918, 1192
BspCNI	CTCAG	2 cut(s)	324, 548
BspFNI	CGCG	1 cut(s)	895
BspLI	GGNNCC	3 cut(s)	426, 996, 1083
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	67
BspT107I	GGYRCC	2 cut(s)	424, 994
BsrI	ACTGG	3 cut(s)	46, 167, 356
BssECI	CCNNGG	5 cut(s)	26, 303, 419, 641, 990
BssMI	GATC	2 cut(s)	59, 311
Bst2UI	CCWGG	5 cut(s)	28, 174, 420, 920, 999
Bst4CI	ACNGT	3 cut(s)	398, 632, 834
Bst6I	CTCTTC	5 cut(s)	133, 480, 545, 783, 804
BstBAI	YACGTR	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	943
BstDEI	CTNAG	3 cut(s)	332, 535, 1176
BstDSI	CCRYGG	1 cut(s)	641
BstF5I	GGATG	5 cut(s)	281, 587, 877, 881, 1186
BstFNI	CGCG	1 cut(s)	895
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	2 cut(s)	62, 314
BstMBI	GATC	2 cut(s)	59, 311
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 583, 848
BstNI	CCWGG	5 cut(s)	28, 174, 420, 920, 999
BstNSI	RCATGY	1 cut(s)	1027
BstSCI	CCNGG	7 cut(s)	26, 172, 418, 918, 989, 990, 997
BstSNI	TACGTA	1 cut(s)	665
BstUI	CGCG	1 cut(s)	895
BstV1I	GCAGC	4 cut(s)	738, 1042, 1126, 1129
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuI	GTATCC	2 cut(s)	145, 161
BsuRI	GGCC	7 cut(s)	31, 95, 689, 851, 892, 918, 1192
BtgI	CCRYGG	1 cut(s)	641
BtgZI	GCGATG	1 cut(s)	857
BtsCI	GGATG	5 cut(s)	281, 587, 877, 881, 1186
BtsI	GCAGTG	1 cut(s)	1012
BtsIMutI	CAGTG	3 cut(s)	363, 545, 1012
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	943
CaiI	CAGNNNCTG	2 cut(s)	173, 779
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	850, 890
Cfr9I	CCCGGG	1 cut(s)	990
CseI	GACGC	1 cut(s)	339
CsiI	ACCWGGT	1 cut(s)	997
Csp6I	GTAC	5 cut(s)	425, 503, 662, 823, 995
CviAII	CATG	5 cut(s)	185, 252, 471, 1024, 1074
CviQI	GTAC	5 cut(s)	425, 503, 662, 823, 995
DdeI	CTNAG	3 cut(s)	332, 535, 1176
DpnI	GATC	2 cut(s)	61, 313
DpnII	GATC	2 cut(s)	59, 311
DraI	TTTAAA	1 cut(s)	910
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	29, 1190
Eam1104I	CTCTTC	5 cut(s)	133, 480, 545, 783, 804
EarI	CTCTTC	5 cut(s)	133, 480, 545, 783, 804
Eco105I	TACGTA	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	569, 723
Eco88I	CYCGRG	1 cut(s)	990
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	5 cut(s)	26, 172, 418, 918, 997
FaeI	CATG	5 cut(s)	188, 255, 474, 1027, 1077
FatI	CATG	5 cut(s)	184, 251, 470, 1023, 1073
FauNDI	CATATG	2 cut(s)	75, 863
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	752, 893, 1031, 1115, 1118
FokI	GGATG	5 cut(s)	288, 594, 884, 888, 1193
Fsp4HI	GCNGC	5 cut(s)	752, 893, 1031, 1115, 1118
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	5 cut(s)	752, 893, 1031, 1115, 1118
GsuI	CTGGAG	2 cut(s)	150, 961
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	7 cut(s)	31, 95, 689, 851, 892, 918, 1192
HapII	CCGG	2 cut(s)	92, 991
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	5 cut(s)	188, 255, 474, 1027, 1077
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	1213
HinfI	GANTC	7 cut(s)	20, 47, 88, 343, 415, 776, 1070
HpaII	CCGG	2 cut(s)	92, 991
HphI	GGTGA	4 cut(s)	15, 292, 345, 1168
Hpy166II	GTNNAC	4 cut(s)	442, 662, 823, 1012
Hpy188I	TCNGA	3 cut(s)	217, 333, 342
Hpy188III	TCNNGA	3 cut(s)	17, 572, 1037
Hpy8I	GTNNAC	4 cut(s)	442, 662, 823, 1012
HpyAV	CCTTC	5 cut(s)	266, 578, 670, 698, 866
HpyCH4III	ACNGT	3 cut(s)	398, 632, 834
HpyCH4IV	ACGT	2 cut(s)	408, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 583, 848
HpyF3I	CTNAG	3 cut(s)	332, 535, 1176
HpySE526I	ACGT	2 cut(s)	408, 664
Hsp92II	CATG	5 cut(s)	188, 255, 474, 1027, 1077
HspAI	GCGC	1 cut(s)	282
KpnI	GGTACC	2 cut(s)	428, 998
Kzo9I	GATC	2 cut(s)	59, 311
Lsp1109I	GCAGC	4 cut(s)	738, 1042, 1126, 1129
LweI	GCATC	3 cut(s)	625, 1171, 1181
MabI	ACCWGGT	1 cut(s)	997
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	2 cut(s)	408, 664
MaeIII	GTNAC	4 cut(s)	176, 351, 522, 896
MalI	GATC	2 cut(s)	61, 313
MboI	GATC	2 cut(s)	59, 311
MboII	GAAGA	9 cut(s)	120, 128, 497, 505, 562, 687, 800, 811, 821
MfeI	CAATTG	1 cut(s)	617
MflI	RGATCY	1 cut(s)	59
MlsI	TGGCCA	2 cut(s)	31, 1192
MluCI	AATT	2 cut(s)	367, 617
MluNI	TGGCCA	2 cut(s)	31, 1192
MlyI	GAGTC	2 cut(s)	14, 337
Mox20I	TGGCCA	2 cut(s)	31, 1192
MscI	TGGCCA	2 cut(s)	31, 1192
MseI	TTAA	5 cut(s)	411, 653, 684, 729, 909
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	2 cut(s)	31, 1192
MspA1I	CMGCKG	1 cut(s)	981
MspI	CCGG	2 cut(s)	92, 991
MspR9I	CCNGG	7 cut(s)	28, 174, 420, 920, 991, 992, 999
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	5 cut(s)	28, 174, 420, 920, 999
MvnI	CGCG	1 cut(s)	895
MwoI	GCNNNNNNNGC	3 cut(s)	11, 583, 848
NciI	CCSGG	2 cut(s)	991, 992
NdeI	CATATG	2 cut(s)	75, 863
NdeII	GATC	2 cut(s)	59, 311
NlaIII	CATG	5 cut(s)	188, 255, 474, 1027, 1077
NlaIV	GGNNCC	3 cut(s)	426, 996, 1083
NmuCI	GTSAC	3 cut(s)	351, 522, 896
NspI	RCATGY	1 cut(s)	1027
PaqCI	CACCTGC	1 cut(s)	19
PfeI	GAWTC	5 cut(s)	47, 88, 415, 776, 1070
PflMI	CCANNNNNTGG	2 cut(s)	173, 1199
PkrI	GCNGC	5 cut(s)	753, 894, 1032, 1116, 1119
PleI	GAGTC	2 cut(s)	14, 337
PpsI	GAGTC	2 cut(s)	14, 337
Ppu21I	YACGTR	1 cut(s)	665
Psp6I	CCWGG	5 cut(s)	26, 172, 418, 918, 997
PspGI	CCWGG	5 cut(s)	26, 172, 418, 918, 997
PspN4I	GGNNCC	3 cut(s)	426, 996, 1083
PspPI	GGNCC	2 cut(s)	850, 890
PstNI	CAGNNNCTG	2 cut(s)	173, 779
PsuI	RGATCY	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	981
RsaI	GTAC	5 cut(s)	426, 504, 663, 824, 996
RsaNI	GTAC	5 cut(s)	425, 503, 662, 823, 995
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	5 cut(s)	411, 653, 684, 729, 909
SatI	GCNGC	5 cut(s)	752, 893, 1031, 1115, 1118
Sau3AI	GATC	2 cut(s)	59, 311
Sau96I	GGNCC	2 cut(s)	850, 890
SchI	GAGTC	2 cut(s)	14, 337
ScrFI	CCNGG	7 cut(s)	28, 174, 420, 920, 991, 992, 999
SexAI	ACCWGGT	1 cut(s)	997
SfaNI	GCATC	3 cut(s)	625, 1171, 1181
SmaI	CCCGGG	1 cut(s)	992
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SnaBI	TACGTA	1 cut(s)	665
Sse9I	AATT	2 cut(s)	367, 617
SsiI	CCGC	2 cut(s)	893, 1207
SspMI	CTAG	1 cut(s)	755
StyD4I	CCNGG	7 cut(s)	26, 172, 418, 918, 989, 990, 997
TaaI	ACNGT	3 cut(s)	398, 632, 834
TaiI	ACGT	2 cut(s)	411, 667
TaqI	TCGA	2 cut(s)	38, 606
TasI	AATT	2 cut(s)	367, 617
TatI	WGTACW	2 cut(s)	502, 822
TauI	GCSGC	1 cut(s)	895
TfiI	GAWTC	5 cut(s)	47, 88, 415, 776, 1070
Tru1I	TTAA	5 cut(s)	411, 653, 684, 729, 909
Tru9I	TTAA	5 cut(s)	411, 653, 684, 729, 909
TscAI	CASTG	3 cut(s)	363, 552, 1019
TseFI	GTSAC	3 cut(s)	351, 522, 896
TseI	GCWGC	4 cut(s)	751, 1030, 1114, 1117
Tsp45I	GTSAC	3 cut(s)	351, 522, 896
TspDTI	ATGAA	7 cut(s)	39, 439, 492, 497, 506, 734, 1062
TspMI	CCCGGG	1 cut(s)	990
TspRI	CASTG	3 cut(s)	363, 552, 1019
Van91I	CCANNNNNTGG	2 cut(s)	173, 1199
XceI	RCATGY	1 cut(s)	1027
XcmI	CCANNNNNNNNNTGG	2 cut(s)	598, 926
XmaI	CCCGGG	1 cut(s)	990
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.