Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008004

Physical Location & Seq

Genomic Coordinates Forward (+)

400005 .. 404572

Gene Structure 4568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG006300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATGGCTTCACCTGCTCTTGACTCACCCTGGCCAACCTCGACTGGCGATTCATTTTGTGGATCTTTCAATATACATATGGAGGAACAGAATCCGGCCTATATTTTACCTGTGCTGGAAGACCCGACCTCTTCTGTATCCTATAACCATAGTATCCCAAAACCACCTCCAGTTCCTGGTAACACCCATGCAGGAAACAAATCTATCAAAAGGCTTTCAGAGAGTTGCTATGTTCCAAAGGAAACAATAGATACATGGGATAAACTTTTCAAAGAAGGATGTGGCGCTGATGTGTATATTATCACCGAGGGCAGATCATACATTCCAGCTCATCTGAGTGTTCTGACTCTTGCGTCACCAGTGATAGGTAATTTCCTACGGCAATCAAAAGTGCAAAACAGTATGAGATACGTTAAGATTCCTGGGGTACCTTACAAAGCTGTCTACACATTCATTCGCTTTCTTTACTCATCATGCTATGAAAAGGAAGAGATGAAGAAATATGTACTTCATTTGTTGGTTTTGTCACACTCCTACTCAGTTCCATCACTGAAGAGAGTTTGTATATACCTTCTTGAGCAGGGATGGCTTACCAAAGAAAATGTGGTCGATGTGCTTCAATTGGCAAGGAACTGTGATGCACCACGGCTCTCTTTAATCTGTGTACGTATGGTTGTGAAGGATTTTAAGGCCATATCTTCAACTGAAGGCTGGAAAGTGATGAAACAAGTTAATCCTGCACTTGAACAAGAGCTGCTAGAGTTTGTTGTTGAAGCAGATTCTGTAAGCTGGTTTCTCCTCTCCTTTTCAAATATTCTAGTTTATAACTGTAATTGTAGGGGGGGGACTGGGGAGAATAGAAATCCCCCAATCCTTTTGTCCAGTTTTAGTATGATTATACATCCTCATTCTTGTGTCTGGGAGGGTGGGCTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

312

Amino Acids

35.04

Weight (kDa)

7.05

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	87 - 194	2.2e-10	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05690
fragaria_vesca	FvH4_1g00430 FvH4_1g00430 FvH4_1g00430 FvH4_1g00430
malus_domestica	MD02G1003500.v1.1 MD15G1146800.v1.1
prunus_persica	Prupe.7G267800_v2.0.a1 Prupe.7G267800_v2.0.a1 Prupe.7G267800_v2.0.a1
pyrus_communis	pycom02g00200 pycom15g13160
rosa_chinensis	RchiOBHm_Chr2g0084941
rosa_laevigata	RLG00000015650
rosa_multiflora	Rmu_co8454519.1_g000001 Rmu_sc0008647.1_g000027
rosa_roxburghii	Rroxscaffold_2G00155700
rosa_rugosa	Rorug01G0457100 Rorug01G0457100
rosa_samantha	Rh2AG004800 Rh2BG006000 Rh2CG006500 Rh2DG006300
rosa_wichuraiana	Rw2G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
AarI	CACCTGC	1 cut(s)	22
AasI	GACNNNNNNGTC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	22
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	444
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	32
AcuI	CTGAAG	2 cut(s)	572, 726
AfaI	GTAC	3 cut(s)	429, 507, 666
AfiI	CCNNNNNNNGG	2 cut(s)	176, 365
AgsI	TTSAA	7 cut(s)	70, 271, 620, 702, 746, 773, 810
AjnI	CCWGG	3 cut(s)	29, 175, 421
AluBI	AGCT	4 cut(s)	329, 440, 754, 789
AluI	AGCT	4 cut(s)	329, 440, 754, 789
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	2 cut(s)	176, 782
AoxI	GGCC	3 cut(s)	32, 96, 690
ApeKI	GCWGC	1 cut(s)	754
Asp718I	GGTACC	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	287
AsuHPI	GGTGA	4 cut(s)	3, 18, 295, 348
BaeI	ACNNNNGTAYC	2 cut(s)	136, 169
BalI	TGGCCA	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	2 cut(s)	553, 579
BceAI	ACGGC	2 cut(s)	395, 662
BciT130I	CCWGG	3 cut(s)	31, 177, 423
BciVI	GTATCC	2 cut(s)	148, 164
BfaI	CTAG	2 cut(s)	758, 818
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	22
BfuI	GTATCC	2 cut(s)	148, 164
BisI	GCNGC	1 cut(s)	755
BlsI	GCNGC	1 cut(s)	756
Bme1390I	CCNGG	3 cut(s)	31, 177, 423
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	3 cut(s)	31, 177, 423
BmrI	ACTGGG	1 cut(s)	858
BmsI	GCATC	1 cut(s)	628
BmuI	ACTGGG	1 cut(s)	858
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	29, 306, 422, 644
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 365
Bse1I	ACTGG	5 cut(s)	49, 170, 359, 853, 882
BseBI	CCWGG	3 cut(s)	31, 177, 423
BseDI	CCNNGG	4 cut(s)	29, 306, 422, 644
BseGI	GGATG	3 cut(s)	284, 590, 901
BseLI	CCNNNNNNNGG	2 cut(s)	176, 365
BseMII	CTCAG	2 cut(s)	326, 552
BseNI	ACTGG	5 cut(s)	49, 170, 359, 853, 882
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	1 cut(s)	741
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	3 cut(s)	34, 98, 692
BshNI	GGYRCC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	2 cut(s)	176, 365
BsmFI	GGGAC	1 cut(s)	859
BsnI	GGCC	3 cut(s)	34, 98, 692
Bsp143I	GATC	2 cut(s)	62, 314
BspANI	GGCC	3 cut(s)	34, 98, 692
BspCNI	CTCAG	2 cut(s)	327, 551
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	427
BsrI	ACTGG	5 cut(s)	49, 170, 359, 853, 882
BssECI	CCNNGG	4 cut(s)	29, 306, 422, 644
BssMI	GATC	2 cut(s)	62, 314
Bst2UI	CCWGG	3 cut(s)	31, 177, 423
Bst4CI	ACNGT	3 cut(s)	401, 635, 830
Bst6I	CTCTTC	3 cut(s)	136, 483, 548
BstBAI	YACGTR	1 cut(s)	668
BstDEI	CTNAG	2 cut(s)	335, 538
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	3 cut(s)	284, 590, 901
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	65, 317
BstMBI	GATC	2 cut(s)	62, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 586
BstNI	CCWGG	3 cut(s)	31, 177, 423
BstSCI	CCNGG	3 cut(s)	29, 175, 421
BstSNI	TACGTA	1 cut(s)	668
BstV1I	GCAGC	1 cut(s)	741
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuI	GTATCC	2 cut(s)	148, 164
BsuRI	GGCC	3 cut(s)	34, 98, 692
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	3 cut(s)	284, 590, 901
BtsIMutI	CAGTG	2 cut(s)	366, 548
BveI	ACCTGC	1 cut(s)	22
CaiI	CAGNNNCTG	2 cut(s)	176, 782
CfoI	GCGC	1 cut(s)	287
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	428, 506, 665
CviAII	CATG	3 cut(s)	188, 255, 474
CviQI	GTAC	3 cut(s)	428, 506, 665
DdeI	CTNAG	2 cut(s)	335, 538
DpnI	GATC	2 cut(s)	64, 316
DpnII	GATC	2 cut(s)	62, 314
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	3 cut(s)	136, 483, 548
EarI	CTCTTC	3 cut(s)	136, 483, 548
Eco105I	TACGTA	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	572, 726
EcoRII	CCWGG	3 cut(s)	29, 175, 421
FaeI	CATG	3 cut(s)	191, 258, 477
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	3 cut(s)	187, 254, 473
FauNDI	CATATG	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	3 cut(s)	291, 597, 888
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	2 cut(s)	758, 818
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	755
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	34, 98, 692
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	3 cut(s)	191, 258, 477
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	6 cut(s)	23, 50, 91, 346, 418, 779
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	4 cut(s)	3, 18, 295, 348
Hpy166II	GTNNAC	2 cut(s)	445, 665
Hpy188I	TCNGA	3 cut(s)	220, 336, 345
Hpy188III	TCNNGA	2 cut(s)	20, 575
Hpy8I	GTNNAC	2 cut(s)	445, 665
HpyAV	CCTTC	4 cut(s)	269, 581, 673, 701
HpyCH4III	ACNGT	3 cut(s)	401, 635, 830
HpyCH4IV	ACGT	2 cut(s)	411, 667
HpyCH4V	TGCA	4 cut(s)	191, 394, 641, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 586
HpyF3I	CTNAG	2 cut(s)	335, 538
HpySE526I	ACGT	2 cut(s)	411, 667
Hsp92II	CATG	3 cut(s)	191, 258, 477
HspAI	GCGC	1 cut(s)	285
KpnI	GGTACC	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	62, 314
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	758, 818
MaeII	ACGT	2 cut(s)	411, 667
MaeIII	GTNAC	3 cut(s)	179, 354, 525
MalI	GATC	2 cut(s)	64, 316
MboI	GATC	2 cut(s)	62, 314
MboII	GAAGA	6 cut(s)	123, 131, 500, 508, 565, 690
MfeI	CAATTG	1 cut(s)	620
MflI	RGATCY	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	3 cut(s)	370, 620, 832
MluNI	TGGCCA	1 cut(s)	34
MlyI	GAGTC	2 cut(s)	17, 340
MnlI	CCTC	8 cut(s)	49, 76, 139, 177, 301, 809, 915, 916
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	4 cut(s)	414, 656, 687, 732
MslI	CAYNNNNRTG	2 cut(s)	336, 912
Msp20I	TGGCCA	1 cut(s)	34
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	31, 177, 423
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	3 cut(s)	31, 177, 423
MwoI	GCNNNNNNNGC	2 cut(s)	14, 586
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	2 cut(s)	62, 314
NlaIII	CATG	3 cut(s)	191, 258, 477
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	354, 525
PaqCI	CACCTGC	1 cut(s)	22
PfeI	GAWTC	4 cut(s)	50, 91, 418, 779
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	756
PleI	GAGTC	2 cut(s)	17, 340
PpsI	GAGTC	2 cut(s)	17, 340
Ppu21I	YACGTR	1 cut(s)	668
PsiI	TTATAA	1 cut(s)	825
Psp6I	CCWGG	3 cut(s)	29, 175, 421
PspGI	CCWGG	3 cut(s)	29, 175, 421
PspN4I	GGNNCC	1 cut(s)	429
PstNI	CAGNNNCTG	2 cut(s)	176, 782
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	3 cut(s)	429, 507, 666
RsaNI	GTAC	3 cut(s)	428, 506, 665
RseI	CAYNNNNRTG	2 cut(s)	336, 912
SaqAI	TTAA	4 cut(s)	414, 656, 687, 732
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	2 cut(s)	62, 314
SchI	GAGTC	2 cut(s)	17, 340
ScrFI	CCNGG	3 cut(s)	31, 177, 423
SfaNI	GCATC	1 cut(s)	628
SmiMI	CAYNNNNRTG	2 cut(s)	336, 912
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SnaBI	TACGTA	1 cut(s)	668
Sse9I	AATT	3 cut(s)	370, 620, 832
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	2 cut(s)	758, 818
StyD4I	CCNGG	3 cut(s)	29, 175, 421
TaaI	ACNGT	3 cut(s)	401, 635, 830
TaiI	ACGT	2 cut(s)	414, 670
TaqI	TCGA	2 cut(s)	41, 609
TasI	AATT	3 cut(s)	370, 620, 832
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	4 cut(s)	50, 91, 418, 779
Tru1I	TTAA	4 cut(s)	414, 656, 687, 732
Tru9I	TTAA	4 cut(s)	414, 656, 687, 732
TscAI	CASTG	2 cut(s)	366, 555
TseFI	GTSAC	2 cut(s)	354, 525
TseI	GCWGC	1 cut(s)	754
Tsp45I	GTSAC	2 cut(s)	354, 525
TspDTI	ATGAA	6 cut(s)	42, 442, 495, 500, 509, 737
TspRI	CASTG	2 cut(s)	366, 555
Van91I	CCANNNNNTGG	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	2 cut(s)	758, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.