Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008004

Physical Location & Seq

Genomic Coordinates Reverse (-)

92080437 .. 92084539

Gene Structure 4103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGATGGCTTCACCTGCTATTGACTCACCCTGGCCAACCTCGACTGGCGATTCATTTTGTGGATCTTTCAATATACATATGGAGGAACAGAATCCGGCCGATATTTTACCTGTGCTGGAAGCTCCGACCTCTTCTGTATCCTATAACCATAGTATCCCAAAACCACCACCAGTTCCTGGTAACACCCATGCAGGAAACAAATCTATCAAAAGGCTTTCAGAGAGTTGCTATGTTCCAAAGGAAACAATAGACACATGGGATAAACTTTTCAAAGAAGGATGTGGCACTGATGTGTATATTATTACCGAGGGAAAATCATATATTCCAGCTCATCTGAGTGTTCTGACTCTTGCATCACCAGTGCTAGGTAATTTCCTCCGGCAATCAAAAGTGCAAAATGGTATGAGATATGTTAAGATTCCTGGGGTACCTTACGAAGCTGTCTACACATTCATTCGCTTTCTTTACTCATCGTGCTATGAAAAGGAAGAGATGAAGAAATATGTTCTTCATTTGTTGGTTTTGTCACACTCCTACTCAGTTCCATCACTGAAGAGAGTTTGTATATACCTTCTTGAGCAGGGATGGCTTACCAAAGAAAATGTGGTCGATGTGCTTCAATTGGCAAGGAACTGTGATGCACCACGGCTCTCTTTAATCTGTGTACGTATGGTTGTGAAGGATTTTAAGGCCATATCTTCAACTGAAGGCTGGAAAGTGATGAAACAAGTTAATCCTGCACTTGAACAAGAGCTGCTAGAGTCTGTTGTTGAAGCAGATTCTGGGAAAGAAGAGAGGTTGAAGAAAAAGGAAGAGAAAAAAGTGTACTTGCAACTGTATGAGGCGATGGAGGCCCTCCTTCACATATGCAAGGATGGATGTAGGACAATAGGGCCCCGTGACAAAGTGTTTAAAGGAGGCCAGGTTGCTTGTGGTTTTCCTGCTTGCAAGGGGCTGGAAACATTAGTTCGTCATTTCTCCAGCTGTAAAACCCGCGTACCTGGTGGCTGTGTTCACTGCAAACGCATGTGGCAGCTTCTTGAACTGCACTCTCGTATTTGCAATCAGCCTGATTCATGCAAGGTTCCTTTGTGTAGGCATTTTAAGGAGAAAATGCAGCAGCAGACCAAGAAAGATGAGGCTAAATGGAAGCTGTTGGTGAGTAAAGTGATAGCATCAAAGGGTGCTCTATGGCCAATCTCTGGTCGGCGGTCAAGCTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

408

Amino Acids

45.96

Weight (kDa)

9.03

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	87 - 194	1.4e-10	BTB/POZ domain
zf-TAZ	PF02135	280 - 365	4e-12	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05690
fragaria_vesca	FvH4_1g00430 FvH4_1g00430 FvH4_1g00430 FvH4_1g00430
malus_domestica	MD02G1003500.v1.1 MD15G1146800.v1.1
prunus_persica	Prupe.7G267800_v2.0.a1 Prupe.7G267800_v2.0.a1 Prupe.7G267800_v2.0.a1
pyrus_communis	pycom02g00200 pycom15g13160
rosa_chinensis	RchiOBHm_Chr2g0084941
rosa_laevigata	RLG00000015650
rosa_multiflora	Rmu_co8454519.1_g000001 Rmu_sc0008647.1_g000027
rosa_roxburghii	Rroxscaffold_2G00155700
rosa_rugosa	Rorug01G0457100 Rorug01G0457100
rosa_samantha	Rh2AG004800 Rh2BG006000 Rh2CG006500 Rh2DG006300
rosa_wichuraiana	Rw2G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	2 cut(s)	176, 1202
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	996
AciI	CCGC	2 cut(s)	994, 1210
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	3 cut(s)	32, 96, 1193
AcuI	CTGAAG	2 cut(s)	572, 726
AfaI	GTAC	4 cut(s)	429, 666, 827, 999
AfiI	CCNNNNNNNGG	3 cut(s)	176, 365, 1202
AgsI	TTSAA	8 cut(s)	70, 271, 620, 702, 746, 773, 802, 1043
AjnI	CCWGG	5 cut(s)	29, 175, 421, 921, 1000
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	8 cut(s)	122, 329, 440, 754, 984, 1036, 1153, 1218
AluI	AGCT	8 cut(s)	122, 329, 440, 754, 984, 1036, 1153, 1218
Alw21I	GWGCWC	1 cut(s)	1189
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	2 cut(s)	176, 782
AoxI	GGCC	7 cut(s)	32, 96, 690, 852, 893, 919, 1193
ApaI	GGGCCC	1 cut(s)	897
ApeKI	GCWGC	4 cut(s)	754, 1033, 1117, 1120
Asp718I	GGTACC	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	853, 893, 894
AsuHPI	GGTGA	4 cut(s)	3, 18, 348, 1171
BaeGI	GKGCMC	1 cut(s)	897
BaeI	ACNNNNGTAYC	4 cut(s)	136, 169, 981, 1014
BalI	TGGCCA	2 cut(s)	34, 1195
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	1189
BbvI	GCAGC	4 cut(s)	741, 1045, 1129, 1132
BccI	CCATC	4 cut(s)	553, 579, 841, 869
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	5 cut(s)	31, 177, 423, 923, 1002
BciVI	GTATCC	2 cut(s)	148, 164
BfaI	CTAG	2 cut(s)	365, 758
BfuAI	ACCTGC	1 cut(s)	22
BfuI	GTATCC	2 cut(s)	148, 164
BisI	GCNGC	4 cut(s)	755, 1034, 1118, 1121
BlsI	GCNGC	4 cut(s)	756, 1035, 1119, 1122
Bme1390I	CCNGG	5 cut(s)	31, 177, 423, 923, 1002
BmgT120I	GGNCC	3 cut(s)	853, 893, 894
BmiI	GGNNCC	4 cut(s)	429, 895, 896, 1086
BmrFI	CCNGG	5 cut(s)	31, 177, 423, 923, 1002
BmsI	GCATC	3 cut(s)	362, 628, 1184
BpmI	CTGGAG	1 cut(s)	964
BpuEI	CTTGAG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	29, 306, 422, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 365, 1202
Bse1I	ACTGG	3 cut(s)	49, 170, 359
BseBI	CCWGG	5 cut(s)	31, 177, 423, 923, 1002
BseDI	CCNNGG	4 cut(s)	29, 306, 422, 644
BseGI	GGATG	4 cut(s)	284, 590, 880, 884
BseLI	CCNNNNNNNGG	3 cut(s)	176, 365, 1202
BseMII	CTCAG	2 cut(s)	326, 552
BseNI	ACTGG	3 cut(s)	49, 170, 359
BseSI	GKGCMC	1 cut(s)	897
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	741, 1045, 1129, 1132
BsgI	GTGCAG	2 cut(s)	723, 1031
Bsh1236I	CGCG	1 cut(s)	996
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	7 cut(s)	34, 98, 692, 854, 895, 921, 1195
BshNI	GGYRCC	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	1189
BsiSI	CCGG	2 cut(s)	95, 379
BslI	CCNNNNNNNGG	3 cut(s)	176, 365, 1202
BsnI	GGCC	7 cut(s)	34, 98, 692, 854, 895, 921, 1195
Bsp120I	GGGCCC	1 cut(s)	893
Bsp1286I	GDGCHC	2 cut(s)	897, 1189
Bsp143I	GATC	1 cut(s)	62
BspACI	CCGC	2 cut(s)	994, 1210
BspANI	GGCC	7 cut(s)	34, 98, 692, 854, 895, 921, 1195
BspCNI	CTCAG	2 cut(s)	327, 551
BspFNI	CGCG	1 cut(s)	996
BspLI	GGNNCC	4 cut(s)	429, 895, 896, 1086
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	427
BsrI	ACTGG	3 cut(s)	49, 170, 359
BssECI	CCNNGG	4 cut(s)	29, 306, 422, 644
BssMI	GATC	1 cut(s)	62
Bst2UI	CCWGG	5 cut(s)	31, 177, 423, 923, 1002
Bst4CI	ACNGT	2 cut(s)	635, 837
Bst6I	CTCTTC	5 cut(s)	136, 483, 548, 786, 807
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	2 cut(s)	335, 538
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	4 cut(s)	284, 590, 880, 884
BstFNI	CGCG	1 cut(s)	996
BstKTI	GATC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	62
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 586, 851
BstNI	CCWGG	5 cut(s)	31, 177, 423, 923, 1002
BstNSI	RCATGY	1 cut(s)	1030
BstSCI	CCNGG	5 cut(s)	29, 175, 421, 921, 1000
BstSLI	GKGCMC	1 cut(s)	897
BstSNI	TACGTA	1 cut(s)	668
BstUI	CGCG	1 cut(s)	996
BstV1I	GCAGC	4 cut(s)	741, 1045, 1129, 1132
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	2 cut(s)	148, 164
BsuRI	GGCC	7 cut(s)	34, 98, 692, 854, 895, 921, 1195
BtgI	CCRYGG	1 cut(s)	644
BtgZI	GCGATG	1 cut(s)	860
BtsCI	GGATG	4 cut(s)	284, 590, 880, 884
BtsI	GCAGTG	1 cut(s)	1015
BtsIMutI	CAGTG	4 cut(s)	285, 366, 548, 1015
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	946
CaiI	CAGNNNCTG	2 cut(s)	176, 782
Cfr13I	GGNCC	3 cut(s)	853, 893, 894
CsiI	ACCWGGT	1 cut(s)	1000
Csp6I	GTAC	4 cut(s)	428, 665, 826, 998
CviAII	CATG	4 cut(s)	188, 255, 1027, 1077
CviQI	GTAC	4 cut(s)	428, 665, 826, 998
DdeI	CTNAG	2 cut(s)	335, 538
DpnI	GATC	1 cut(s)	64
DpnII	GATC	1 cut(s)	62
DraI	TTTAAA	1 cut(s)	913
EaeI	YGGCCR	3 cut(s)	32, 96, 1193
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	5 cut(s)	136, 483, 548, 786, 807
EarI	CTCTTC	5 cut(s)	136, 483, 548, 786, 807
EclXI	CGGCCG	1 cut(s)	96
Eco105I	TACGTA	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	897
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	572, 726
EcoO109I	RGGNCCY	3 cut(s)	853, 893, 894
EcoRII	CCWGG	5 cut(s)	29, 175, 421, 921, 1000
EcoT38I	GRGCYC	1 cut(s)	897
FaeI	CATG	4 cut(s)	191, 258, 1030, 1080
FatI	CATG	4 cut(s)	187, 254, 1026, 1076
FauI	CCCGC	1 cut(s)	1001
FauNDI	CATATG	2 cut(s)	78, 866
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	755, 1034, 1118, 1121
FokI	GGATG	4 cut(s)	291, 597, 887, 891
FriOI	GRGCYC	1 cut(s)	897
Fsp4HI	GCNGC	4 cut(s)	755, 1034, 1118, 1121
FspBI	CTAG	2 cut(s)	365, 758
GluI	GCNGC	4 cut(s)	755, 1034, 1118, 1121
GsuI	CTGGAG	1 cut(s)	964
HaeIII	GGCC	7 cut(s)	34, 98, 692, 854, 895, 921, 1195
HapII	CCGG	2 cut(s)	95, 379
Hin1II	CATG	4 cut(s)	191, 258, 1030, 1080
HindIII	AAGCTT	1 cut(s)	1216
HinfI	GANTC	8 cut(s)	23, 50, 91, 346, 418, 761, 779, 1073
HpaII	CCGG	2 cut(s)	95, 379
HphI	GGTGA	4 cut(s)	3, 18, 348, 1171
Hpy166II	GTNNAC	4 cut(s)	445, 665, 826, 1015
Hpy188I	TCNGA	4 cut(s)	126, 220, 336, 345
Hpy188III	TCNNGA	2 cut(s)	575, 1040
Hpy8I	GTNNAC	4 cut(s)	445, 665, 826, 1015
HpyAV	CCTTC	5 cut(s)	269, 581, 673, 701, 869
HpyCH4III	ACNGT	2 cut(s)	635, 837
HpyCH4IV	ACGT	1 cut(s)	667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 586, 851
HpyF3I	CTNAG	2 cut(s)	335, 538
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	4 cut(s)	191, 258, 1030, 1080
KpnI	GGTACC	1 cut(s)	431
Kzo9I	GATC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	4 cut(s)	741, 1045, 1129, 1132
LweI	GCATC	3 cut(s)	362, 628, 1184
MabI	ACCWGGT	1 cut(s)	1000
MaeI	CTAG	2 cut(s)	365, 758
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	3 cut(s)	179, 525, 899
MalI	GATC	1 cut(s)	64
MboI	GATC	1 cut(s)	62
MboII	GAAGA	9 cut(s)	123, 500, 500, 508, 565, 690, 803, 814, 824
MfeI	CAATTG	1 cut(s)	620
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	897, 1189
MlsI	TGGCCA	2 cut(s)	34, 1195
MluCI	AATT	2 cut(s)	370, 620
MluNI	TGGCCA	2 cut(s)	34, 1195
MlyI	GAGTC	3 cut(s)	17, 340, 770
MmeI	TCCRAC	1 cut(s)	149
Mox20I	TGGCCA	2 cut(s)	34, 1195
MscI	TGGCCA	2 cut(s)	34, 1195
MseI	TTAA	6 cut(s)	414, 656, 687, 732, 912, 1104
MslI	CAYNNNNRTG	2 cut(s)	290, 336
Msp20I	TGGCCA	2 cut(s)	34, 1195
MspA1I	CMGCKG	1 cut(s)	984
MspI	CCGG	2 cut(s)	95, 379
MspR9I	CCNGG	5 cut(s)	31, 177, 423, 923, 1002
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	5 cut(s)	31, 177, 423, 923, 1002
MvnI	CGCG	1 cut(s)	996
MwoI	GCNNNNNNNGC	3 cut(s)	14, 586, 851
NdeI	CATATG	2 cut(s)	78, 866
NdeII	GATC	1 cut(s)	62
NlaIII	CATG	4 cut(s)	191, 258, 1030, 1080
NlaIV	GGNNCC	4 cut(s)	429, 895, 896, 1086
NmuCI	GTSAC	2 cut(s)	525, 899
NspI	RCATGY	1 cut(s)	1030
OliI	CACNNNNGTG	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	22
PfeI	GAWTC	5 cut(s)	50, 91, 418, 779, 1073
PflMI	CCANNNNNTGG	2 cut(s)	176, 1202
PkrI	GCNGC	4 cut(s)	756, 1035, 1119, 1122
PleI	GAGTC	3 cut(s)	17, 340, 769
PpsI	GAGTC	3 cut(s)	17, 340, 769
Ppu21I	YACGTR	1 cut(s)	668
Psp6I	CCWGG	5 cut(s)	29, 175, 421, 921, 1000
PspGI	CCWGG	5 cut(s)	29, 175, 421, 921, 1000
PspN4I	GGNNCC	4 cut(s)	429, 895, 896, 1086
PspOMI	GGGCCC	1 cut(s)	893
PspPI	GGNCC	3 cut(s)	853, 893, 894
PstNI	CAGNNNCTG	2 cut(s)	176, 782
PsuI	RGATCY	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	984
RsaI	GTAC	4 cut(s)	429, 666, 827, 999
RsaNI	GTAC	4 cut(s)	428, 665, 826, 998
RseI	CAYNNNNRTG	2 cut(s)	290, 336
SaqAI	TTAA	6 cut(s)	414, 656, 687, 732, 912, 1104
SatI	GCNGC	4 cut(s)	755, 1034, 1118, 1121
Sau3AI	GATC	1 cut(s)	62
Sau96I	GGNCC	3 cut(s)	853, 893, 894
SchI	GAGTC	3 cut(s)	17, 340, 770
ScrFI	CCNGG	5 cut(s)	31, 177, 423, 923, 1002
SduI	GDGCHC	2 cut(s)	897, 1189
SexAI	ACCWGGT	1 cut(s)	1000
SfaNI	GCATC	3 cut(s)	362, 628, 1184
SmiMI	CAYNNNNRTG	2 cut(s)	290, 336
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SnaBI	TACGTA	1 cut(s)	668
Sse9I	AATT	2 cut(s)	370, 620
SsiI	CCGC	2 cut(s)	994, 1210
SspMI	CTAG	2 cut(s)	365, 758
StyD4I	CCNGG	5 cut(s)	29, 175, 421, 921, 1000
TaaI	ACNGT	2 cut(s)	635, 837
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	2 cut(s)	41, 609
TasI	AATT	2 cut(s)	370, 620
TatI	WGTACW	1 cut(s)	825
TfiI	GAWTC	5 cut(s)	50, 91, 418, 779, 1073
Tru1I	TTAA	6 cut(s)	414, 656, 687, 732, 912, 1104
Tru9I	TTAA	6 cut(s)	414, 656, 687, 732, 912, 1104
TscAI	CASTG	4 cut(s)	292, 366, 555, 1022
TseFI	GTSAC	2 cut(s)	525, 899
TseI	GCWGC	4 cut(s)	754, 1033, 1117, 1120
Tsp45I	GTSAC	2 cut(s)	525, 899
TspDTI	ATGAA	7 cut(s)	42, 442, 495, 500, 509, 737, 1065
TspRI	CASTG	4 cut(s)	292, 366, 555, 1022
Van91I	CCANNNNNTGG	2 cut(s)	176, 1202
XceI	RCATGY	1 cut(s)	1030
XcmI	CCANNNNNNNNNTGG	2 cut(s)	601, 929
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	2 cut(s)	365, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.